Wall clock time and date at job start Thu Apr 9 2020 12:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46978 * 2 1 4 4 C 1.52995 * 109.46590 * 119.99409 * 2 1 3 5 5 C 1.52996 * 109.47687 * 294.30173 * 4 2 1 6 6 C 1.50697 * 109.47380 * 185.07487 * 5 4 2 7 7 H 1.08003 * 119.99957 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99796 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00453 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99719 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47384 * 89.99845 * 10 8 6 12 12 H 1.48505 * 109.47296 * 209.99888 * 10 8 6 13 13 H 1.48504 * 109.47253 * 329.99616 * 10 8 6 14 14 N 1.46894 * 109.47230 * 239.99823 * 2 1 3 15 15 C 1.48555 * 111.00417 * 64.50506 * 14 2 1 16 16 C 1.54381 * 104.59492 * 159.04028 * 15 14 2 17 17 H 1.08997 * 117.60226 * 115.29151 * 16 15 14 18 18 C 1.54261 * 105.06065 * 336.14857 * 16 15 14 19 19 H 1.08996 * 121.78167 * 136.99456 * 18 16 15 20 20 C 1.48559 * 110.99762 * 179.97438 * 14 2 1 21 21 C 1.52999 * 118.12959 * 272.76903 * 16 15 14 22 22 C 1.52997 * 117.44868 * 199.31688 * 21 16 15 23 23 C 1.53005 * 117.44162 * 344.02855 * 21 16 15 24 24 H 1.08998 * 109.47230 * 300.00841 * 1 2 3 25 25 H 1.09010 * 109.46843 * 60.00165 * 1 2 3 26 26 H 1.08993 * 109.46898 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47311 * 54.30740 * 4 2 1 28 28 H 1.09001 * 109.47003 * 174.29873 * 4 2 1 29 29 H 1.09009 * 109.46766 * 305.07075 * 5 4 2 30 30 H 1.08996 * 109.47150 * 65.06614 * 5 4 2 31 31 H 0.96992 * 119.99870 * 180.02562 * 9 8 6 32 32 H 1.09003 * 110.41139 * 40.26070 * 15 14 2 33 33 H 1.09000 * 110.51858 * 277.87086 * 15 14 2 34 34 H 1.08996 * 110.41012 * 319.73205 * 20 14 2 35 35 H 1.08999 * 110.41441 * 82.06566 * 20 14 2 36 36 H 1.09000 * 109.47198 * 60.00069 * 22 21 16 37 37 H 1.09004 * 109.47420 * 180.02562 * 22 21 16 38 38 H 1.09007 * 109.46908 * 300.00388 * 22 21 16 39 39 H 1.09002 * 109.47452 * 53.75463 * 23 21 16 40 40 H 1.09003 * 109.46657 * 173.75548 * 23 21 16 41 41 H 1.09000 * 109.46841 * 293.74872 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.6502 0.0781 2.4944 6 6 2.2580 -0.5646 3.7145 7 1 2.8615 -1.4544 3.6121 8 6 2.0427 -0.0172 4.9615 9 7 1.3074 1.0661 5.0862 10 14 2.7954 -0.8142 6.4739 11 1 4.1385 -0.2319 6.7238 12 1 1.9225 -0.5677 7.6498 13 1 2.9238 -2.2768 6.2507 14 7 2.0198 -0.6925 -1.1994 15 6 1.6345 0.0410 -2.4324 16 6 2.6255 -0.4563 -3.5066 17 1 2.2187 -1.0175 -4.3478 18 6 3.8559 -0.9509 -2.7186 19 1 4.3651 -1.8803 -2.9732 20 6 3.5048 -0.7117 -1.2339 21 6 3.9677 0.2660 -3.6394 22 6 4.7366 0.0900 -4.9503 23 6 4.0973 1.6401 -2.9792 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.5957 -1.7152 1.3018 28 1 3.1251 -0.8104 1.1998 29 1 2.0186 1.0997 2.4003 30 1 0.5648 0.0909 2.5929 31 1 1.1563 1.4513 5.9634 32 1 1.7417 1.1157 -2.2846 33 1 0.6110 -0.2023 -2.7176 34 1 3.9053 0.2448 -0.8983 35 1 3.8891 -1.5223 -0.6147 36 1 4.1297 0.4544 -5.7792 37 1 5.6671 0.6559 -4.9046 38 1 4.9609 -0.9660 -5.1010 39 1 3.8172 1.5663 -1.9283 40 1 5.1285 1.9847 -3.0570 41 1 3.4387 2.3483 -3.4820 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172502779.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:36 Heat of formation + Delta-G solvation = -1.658983 kcal Electronic energy + Delta-G solvation = -17328.847932 eV Core-core repulsion = 14822.125219 eV Total energy + Delta-G solvation = -2506.722713 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.50060 -37.91577 -35.39266 -33.56438 -31.07969 -29.78514 -29.05458 -28.40209 -26.91036 -24.56588 -22.88900 -21.03970 -20.68440 -19.39425 -18.54991 -17.28256 -16.51558 -16.30518 -15.91356 -15.26572 -14.91977 -14.80500 -14.41004 -14.00762 -13.72628 -13.48662 -13.33198 -13.16048 -12.97335 -12.95211 -12.82212 -12.63122 -12.45526 -12.36133 -12.14598 -11.83747 -11.80163 -11.51389 -11.32016 -11.01523 -10.69642 -10.54258 -10.46848 -9.35144 -8.20779 -6.31706 1.38755 1.40186 1.51567 2.40066 2.58428 2.96944 3.12178 3.50828 3.67042 3.86847 4.05493 4.06276 4.15010 4.25302 4.30855 4.45186 4.56549 4.56976 4.70831 4.75672 4.77977 4.88025 4.92641 4.94861 4.97112 5.01024 5.07667 5.10121 5.15575 5.17696 5.25511 5.28548 5.35834 5.48940 5.50232 5.73675 5.84192 5.92135 6.08909 6.27556 6.84655 7.37292 8.91070 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.039224 B = 0.004829 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.674182 B = 5796.772089 C = 6071.486581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.080 3.920 3 H 0.024 0.976 4 C -0.087 4.087 5 C 0.030 3.970 6 C -0.544 4.544 7 H 0.056 0.944 8 C 0.001 3.999 9 N -0.932 5.932 10 Si 0.964 3.036 11 H -0.272 1.272 12 H -0.280 1.280 13 H -0.264 1.264 14 N -0.510 5.510 15 C 0.057 3.943 16 C -0.156 4.156 17 H 0.130 0.870 18 C -0.163 4.163 19 H 0.125 0.875 20 C 0.054 3.946 21 C -0.089 4.089 22 C -0.108 4.108 23 C -0.128 4.128 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.045 0.955 29 H -0.015 1.015 30 H 0.000 1.000 31 H 0.264 0.736 32 H 0.041 0.959 33 H 0.089 0.911 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.546 -1.473 -19.766 20.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.028 4.028 3 H 0.042 0.958 4 C -0.125 4.125 5 C -0.007 4.007 6 C -0.582 4.582 7 H 0.074 0.926 8 C -0.196 4.196 9 N -0.573 5.573 10 Si 0.788 3.212 11 H -0.197 1.197 12 H -0.205 1.205 13 H -0.188 1.188 14 N -0.235 5.235 15 C -0.070 4.070 16 C -0.174 4.174 17 H 0.147 0.853 18 C -0.182 4.182 19 H 0.143 0.857 20 C -0.073 4.073 21 C -0.089 4.089 22 C -0.165 4.165 23 C -0.185 4.185 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.004 0.996 30 H 0.018 0.982 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.108 0.892 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.221 -1.902 -19.601 20.141 hybrid contribution 0.417 0.654 1.365 1.570 sum 4.638 -1.248 -18.236 18.858 Atomic orbital electron populations 1.21738 0.93664 1.02232 1.01390 1.21733 0.96459 0.94447 0.90196 0.95846 1.21457 0.99238 0.98656 0.93121 1.18978 0.95347 0.93981 0.92397 1.21686 1.31650 1.11808 0.93076 0.92564 1.25956 0.95624 0.95511 1.02542 1.70091 1.40140 1.22367 1.24665 0.85467 0.78348 0.79126 0.78238 1.19740 1.20532 1.18845 1.65593 1.08493 1.47907 1.01465 1.22657 0.99494 0.95923 0.88956 1.23598 0.88719 1.04855 1.00252 0.85251 1.23645 1.03664 0.99822 0.91028 0.85748 1.22644 0.88448 1.00386 0.95824 1.21785 0.97228 0.92424 0.97461 1.21306 0.99478 1.02521 0.93228 1.21491 1.02643 0.94882 0.99490 0.93368 0.91439 0.92101 0.93119 0.93614 0.99624 0.98179 0.92743 0.94074 0.89246 0.94235 0.90755 0.90963 0.91198 0.91700 0.94057 0.91005 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 8.92 71.98 0.64 -3.90 16 2 C 0.08 2.96 1.90 44.92 0.09 3.04 16 3 H 0.02 0.92 7.97 -2.39 -0.02 0.91 16 4 C -0.09 -3.83 4.60 30.59 0.14 -3.69 16 5 C 0.03 1.66 4.62 29.85 0.14 1.80 16 6 C -0.54 -32.02 9.11 25.60 0.23 -31.78 16 7 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 8 C 0.00 0.08 5.46 84.66 0.46 0.55 16 9 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 10 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 13 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 14 N -0.51 -16.06 5.20 -856.28 -4.45 -20.51 16 15 C 0.06 1.46 5.00 86.45 0.43 1.89 16 16 C -0.16 -3.32 6.81 -9.90 -0.07 -3.38 16 17 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 18 C -0.16 -3.76 6.71 -9.88 -0.07 -3.82 16 19 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 20 C 0.05 1.61 4.80 86.46 0.42 2.03 16 21 C -0.09 -1.71 2.67 -52.18 -0.14 -1.85 16 22 C -0.11 -1.51 9.84 71.98 0.71 -0.80 16 23 C -0.13 -2.65 8.52 71.98 0.61 -2.03 16 24 H 0.05 1.84 6.70 -2.39 -0.02 1.82 16 25 H 0.07 1.93 7.06 -2.38 -0.02 1.91 16 26 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 28 H 0.05 2.01 6.65 -2.39 -0.02 1.99 16 29 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 30 H 0.00 -0.01 6.84 -2.39 -0.02 -0.02 16 31 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 32 H 0.04 1.09 6.53 -2.39 -0.02 1.08 16 33 H 0.09 2.13 7.70 -2.39 -0.02 2.11 16 34 H 0.04 1.26 5.77 -2.39 -0.01 1.25 16 35 H 0.07 2.34 7.53 -2.39 -0.02 2.32 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 0.88 8.00 -2.38 -0.02 0.86 16 38 H 0.06 0.83 7.97 -2.38 -0.02 0.81 16 39 H 0.04 1.05 4.94 -2.39 -0.01 1.04 16 40 H 0.07 1.30 8.03 -2.39 -0.02 1.28 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -64.51 313.03 2.43 -62.07 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.97 Total: 10.62 kcal Atomic # 6 Polarization: -45.56 SS G_CDS: 3.60 Total: -41.96 kcal Atomic # 7 Polarization: -73.74 SS G_CDS: -4.16 Total: -77.90 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -64.51 2.43 -62.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172502779.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.414 kcal (2) G-P(sol) polarization free energy of solvation -64.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds