Wall clock time and date at job start Thu Apr 9 2020 12:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47242 * 2 1 4 4 C 1.53000 * 109.46822 * 239.99878 * 2 1 3 5 5 C 1.52994 * 109.47425 * 65.52590 * 4 2 1 6 6 C 1.50700 * 109.47363 * 175.07830 * 5 4 2 7 7 H 1.07999 * 119.99839 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99744 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99814 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00431 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.47006 * 89.99577 * 10 8 6 12 12 H 1.48493 * 109.47073 * 209.99563 * 10 8 6 13 13 H 1.48503 * 109.46830 * 329.99836 * 10 8 6 14 14 N 1.46901 * 109.47049 * 119.99908 * 2 1 3 15 15 C 1.48563 * 110.99651 * 180.37391 * 14 2 1 16 16 C 1.54384 * 104.59450 * 159.04505 * 15 14 2 17 17 H 1.08997 * 118.16137 * 115.85014 * 16 15 14 18 18 C 1.54265 * 105.05622 * 336.13942 * 16 15 14 19 19 H 1.09006 * 121.78221 * 136.99719 * 18 16 15 20 20 C 1.48559 * 111.00145 * 295.78774 * 14 2 1 21 21 C 1.52999 * 59.72945 * 245.90957 * 18 16 15 22 22 C 1.53000 * 117.44314 * 107.64765 * 21 18 16 23 23 C 1.52997 * 117.44616 * 252.35503 * 21 18 16 24 24 H 1.09001 * 109.47157 * 59.99831 * 1 2 3 25 25 H 1.09003 * 109.46993 * 300.00020 * 1 2 3 26 26 H 1.08996 * 109.47614 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47086 * 185.52514 * 4 2 1 28 28 H 1.09000 * 109.46907 * 305.51994 * 4 2 1 29 29 H 1.09004 * 109.46984 * 295.08403 * 5 4 2 30 30 H 1.09005 * 109.47307 * 55.07407 * 5 4 2 31 31 H 0.97003 * 119.99894 * 180.02562 * 9 8 6 32 32 H 1.09007 * 110.41392 * 277.81373 * 15 14 2 33 33 H 1.08997 * 110.41630 * 40.25928 * 15 14 2 34 34 H 1.09001 * 110.41079 * 319.74232 * 20 14 2 35 35 H 1.08999 * 110.40904 * 82.06529 * 20 14 2 36 36 H 1.09002 * 109.47164 * 67.31814 * 22 21 18 37 37 H 1.08992 * 109.47569 * 187.32371 * 22 21 18 38 38 H 1.09003 * 109.46821 * 307.32326 * 22 21 18 39 39 H 1.09001 * 109.46840 * 60.00233 * 23 21 18 40 40 H 1.08998 * 109.47354 * 180.02562 * 23 21 18 41 41 H 1.08997 * 109.47071 * 300.00068 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6465 0.0756 -2.4946 6 6 2.2510 -0.5691 -3.7153 7 1 2.8551 -1.4585 -3.6130 8 6 2.0321 -0.0240 -4.9626 9 7 2.5600 -0.5863 -6.0278 10 14 0.9867 1.5140 -5.1395 11 1 1.8534 2.7158 -5.0400 12 1 0.3074 1.5016 -6.4599 13 1 -0.0317 1.5473 -4.0592 14 7 2.0196 -0.6925 1.1995 15 6 3.5047 -0.7044 1.2383 16 6 3.8531 -0.9456 2.7228 17 1 4.3741 -1.8661 2.9860 18 6 2.6186 -0.4574 3.5086 19 1 2.2122 -1.0218 4.3479 20 6 1.6282 0.0375 2.4327 21 6 3.9575 0.2702 3.6458 22 6 4.0830 1.6461 2.9883 23 6 4.7238 0.0953 4.9584 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1254 -0.8078 -1.2012 28 1 1.5980 -1.7164 -1.3000 29 1 0.5607 0.0878 -2.5901 30 1 2.0146 1.0975 -2.4034 31 1 2.4063 -0.2025 -6.9054 32 1 3.8947 -1.5132 0.6202 33 1 3.9015 0.2547 0.9055 34 1 1.7313 1.1128 2.2869 35 1 0.6045 -0.2110 2.7128 36 1 3.4344 2.3551 3.5028 37 1 5.1164 1.9865 3.0523 38 1 3.7874 1.5767 1.9415 39 1 4.9523 -0.9599 5.1079 40 1 5.6516 0.6659 4.9163 41 1 4.1134 0.4557 5.7864 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172502780.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:40 Heat of formation + Delta-G solvation = 19.130202 kcal Electronic energy + Delta-G solvation = -17383.051341 eV Core-core repulsion = 14877.230115 eV Total energy + Delta-G solvation = -2505.821226 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.50079 -36.64583 -33.54196 -31.99844 -29.83523 -28.76135 -28.01440 -27.57917 -25.25868 -23.09561 -20.94859 -20.02124 -19.26910 -18.51953 -16.76799 -16.19747 -15.26836 -14.64637 -14.29711 -14.12858 -13.85465 -13.51629 -13.04487 -12.66112 -12.56627 -12.40361 -12.37279 -12.06709 -11.88671 -11.72038 -11.39481 -11.26286 -11.15012 -10.87918 -10.70431 -10.49286 -10.00836 -9.81550 -9.64548 -9.57095 -9.45736 -9.10336 -8.50641 -8.15559 -6.01431 -3.98782 3.31706 3.39149 3.42789 3.46078 4.09290 4.45027 4.47380 4.61396 4.74867 4.93809 5.11973 5.21677 5.32202 5.39362 5.43354 5.48428 5.53957 5.58706 5.65558 5.71259 5.76894 5.83209 5.84053 5.92228 6.00842 6.12084 6.16577 6.22336 6.29798 6.30906 6.49709 6.58402 6.62720 6.91188 7.10480 7.31969 7.40722 7.49831 7.83843 8.58201 9.04337 9.61413 11.12249 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.039291 B = 0.005088 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.468131 B = 5501.421681 C = 5640.540200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.068 3.932 3 H 0.036 0.964 4 C -0.094 4.094 5 C -0.012 4.012 6 C -0.517 4.517 7 H 0.071 0.929 8 C 0.066 3.934 9 N -0.905 5.905 10 Si 0.879 3.121 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.265 1.265 14 N -0.504 5.504 15 C 0.058 3.942 16 C -0.154 4.154 17 H 0.114 0.886 18 C -0.158 4.158 19 H 0.112 0.888 20 C 0.060 3.940 21 C -0.102 4.102 22 C -0.126 4.126 23 C -0.112 4.112 24 H 0.065 0.935 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.018 0.982 30 H 0.007 0.993 31 H 0.262 0.738 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.764 3.166 20.864 21.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.040 4.040 3 H 0.054 0.946 4 C -0.132 4.132 5 C -0.050 4.050 6 C -0.555 4.555 7 H 0.089 0.911 8 C -0.135 4.135 9 N -0.544 5.544 10 Si 0.706 3.294 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.190 1.190 14 N -0.228 5.228 15 C -0.069 4.069 16 C -0.173 4.173 17 H 0.131 0.869 18 C -0.177 4.177 19 H 0.130 0.870 20 C -0.068 4.068 21 C -0.102 4.102 22 C -0.183 4.183 23 C -0.169 4.169 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.036 0.964 30 H 0.025 0.975 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.522 2.636 20.616 20.790 hybrid contribution -0.204 1.534 -0.281 1.573 sum 0.318 4.171 20.335 20.761 Atomic orbital electron populations 1.21833 0.94605 1.02343 1.01042 1.22017 0.95783 0.95552 0.90672 0.94585 1.21522 1.00028 0.99415 0.92197 1.19603 0.96666 0.95194 0.93553 1.21157 1.31686 1.12880 0.89827 0.91078 1.25030 0.95518 0.97082 0.95888 1.69922 1.45288 1.40724 0.98494 0.86789 0.81258 0.83869 0.77439 1.20398 1.21405 1.19009 1.65622 1.07737 1.48020 1.01430 1.22656 0.88927 1.01465 0.93858 1.23671 1.02424 0.98407 0.92750 0.86852 1.23532 0.89124 1.04570 1.00464 0.86988 1.22597 0.98417 0.96245 0.89539 1.21662 0.98017 0.93445 0.97107 1.21471 1.01793 0.94278 1.00771 1.21283 0.99333 1.01796 0.94454 0.91630 0.93833 0.91956 0.92746 0.92071 0.96355 0.97471 0.92807 0.89389 0.93079 0.93761 0.90128 0.92278 0.92102 0.91782 0.92374 0.91998 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.91 37.16 0.33 -1.89 16 2 C 0.07 1.15 1.90 -67.71 -0.13 1.02 16 3 H 0.04 0.63 7.97 -51.93 -0.41 0.21 16 4 C -0.09 -1.92 4.61 -26.73 -0.12 -2.04 16 5 C -0.01 -0.30 3.68 -27.89 -0.10 -0.40 16 6 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 7 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 8 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 10 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 13 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 14 N -0.50 -7.66 5.20 -222.02 -1.15 -8.82 16 15 C 0.06 0.84 4.80 -2.18 -0.01 0.82 16 16 C -0.15 -1.84 6.71 -89.23 -0.60 -2.44 16 17 H 0.11 1.26 8.13 -51.93 -0.42 0.84 16 18 C -0.16 -1.80 6.81 -89.24 -0.61 -2.41 16 19 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 20 C 0.06 0.77 4.99 -2.18 -0.01 0.76 16 21 C -0.10 -1.06 2.67 -154.51 -0.41 -1.47 16 22 C -0.13 -1.33 8.53 37.16 0.32 -1.01 16 23 C -0.11 -0.93 9.84 37.16 0.37 -0.56 16 24 H 0.06 1.09 6.69 -51.93 -0.35 0.75 16 25 H 0.04 0.59 7.05 -51.93 -0.37 0.22 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.05 1.13 6.67 -51.93 -0.35 0.78 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.02 0.44 5.88 -51.93 -0.31 0.14 16 30 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 31 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 32 H 0.09 1.33 7.54 -51.93 -0.39 0.94 16 33 H 0.05 0.76 5.78 -51.93 -0.30 0.46 16 34 H 0.04 0.57 6.51 -51.93 -0.34 0.23 16 35 H 0.08 0.99 7.69 -51.93 -0.40 0.59 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.58 8.05 -51.93 -0.42 0.16 16 38 H 0.06 0.78 4.91 -51.93 -0.25 0.52 16 39 H 0.06 0.46 7.96 -51.93 -0.41 0.05 16 40 H 0.06 0.47 8.01 -51.93 -0.42 0.06 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 309.40 15.07 4.66 4.66 Total: -1.00 -30.42 309.40 -9.03 -39.44 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -7.23 Total: -1.95 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -1.41 Total: -23.13 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: -0.38 Total: -36.37 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.42 -9.03 -39.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172502780.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.574 kcal (2) G-P(sol) polarization free energy of solvation -30.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds