Wall clock time and date at job start Thu Apr 9 2020 12:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47473 * 2 1 4 4 C 1.53001 * 109.47040 * 120.00047 * 2 1 3 5 5 C 1.52997 * 109.47131 * 184.99734 * 4 2 1 6 6 C 1.50699 * 109.46899 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00426 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99826 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00138 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99996 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47161 * 90.00089 * 10 8 6 12 12 H 1.48500 * 109.47033 * 209.99896 * 10 8 6 13 13 H 1.48507 * 109.47131 * 329.99842 * 10 8 6 14 14 N 1.46899 * 109.46962 * 239.99851 * 2 1 3 15 15 C 1.46735 * 111.00175 * 324.05667 * 14 2 1 16 16 C 1.53087 * 109.78158 * 124.48888 * 15 14 2 17 17 C 1.53220 * 109.07882 * 59.56442 * 16 15 14 18 18 C 1.53165 * 108.90418 * 302.21806 * 17 16 15 19 19 C 1.46723 * 111.00160 * 88.96849 * 14 2 1 20 20 C 1.55349 * 108.95292 * 295.70676 * 19 14 2 21 21 C 1.53156 * 108.84495 * 299.66006 * 20 19 14 22 22 H 1.09002 * 109.47161 * 317.66679 * 1 2 3 23 23 H 1.09000 * 109.46959 * 77.66202 * 1 2 3 24 24 H 1.08997 * 109.47438 * 197.66352 * 1 2 3 25 25 H 1.09006 * 109.47113 * 304.99860 * 4 2 1 26 26 H 1.08996 * 109.47371 * 64.99723 * 4 2 1 27 27 H 1.08992 * 109.47364 * 299.99933 * 5 4 2 28 28 H 1.08998 * 109.47265 * 60.00231 * 5 4 2 29 29 H 0.96999 * 120.00406 * 180.02562 * 9 8 6 30 30 H 1.08998 * 109.42355 * 244.58863 * 15 14 2 31 31 H 1.09005 * 109.41946 * 4.39804 * 15 14 2 32 32 H 1.09001 * 109.65791 * 179.66908 * 16 15 14 33 33 H 1.08998 * 109.55827 * 62.04243 * 17 16 15 34 34 H 1.08992 * 109.56607 * 182.38703 * 17 16 15 35 35 H 1.08989 * 109.52577 * 239.73015 * 18 17 16 36 36 H 1.08997 * 109.52434 * 119.52952 * 18 17 16 37 37 H 1.08998 * 109.41909 * 55.60674 * 19 14 2 38 38 H 1.09004 * 109.22387 * 180.11410 * 20 19 14 39 39 H 1.08999 * 110.11820 * 59.73628 * 20 19 14 40 40 H 1.09005 * 109.56534 * 241.07618 * 21 20 19 41 41 H 1.09005 * 109.66540 * 120.79450 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3137 6 6 4.0670 -1.3233 2.5445 7 1 3.3686 -1.8037 3.2136 8 6 5.4183 -1.3603 2.8158 9 7 6.2690 -0.7757 2.0008 10 14 6.0410 -2.2409 4.3411 11 1 6.3205 -3.6619 4.0128 12 1 7.2875 -1.5879 4.8153 13 1 5.0098 -2.1727 5.4076 14 7 2.0196 -0.6925 -1.1994 15 6 1.1493 -1.8216 -1.5469 16 6 0.6618 -1.6749 -2.9906 17 6 1.8737 -1.6440 -3.9277 18 6 2.7891 -0.4867 -3.5170 19 6 2.1716 0.2415 -2.3207 20 6 0.7738 0.7990 -2.7060 21 6 -0.1266 -0.3678 -3.1226 22 1 -0.3633 0.7597 0.6921 23 1 -0.3633 0.2196 -1.0039 24 1 -0.3634 -0.9792 0.3118 25 1 1.6053 -0.2617 2.1370 26 1 1.7516 -1.7715 1.2056 27 1 3.9994 -1.0729 0.4260 28 1 3.8532 0.4368 1.3574 29 1 7.2197 -0.8020 2.1914 30 1 1.7060 -2.7532 -1.4452 31 1 0.2913 -1.8382 -0.8747 32 1 0.0203 -2.5176 -3.2485 33 1 2.4183 -2.5851 -3.8511 34 1 1.5378 -1.4972 -4.9541 35 1 2.8953 0.2072 -4.3507 36 1 3.7682 -0.8774 -3.2399 37 1 2.8246 1.0619 -2.0230 38 1 0.8814 1.4922 -3.5403 39 1 0.3293 1.3167 -1.8560 40 1 -0.4416 -0.2343 -4.1576 41 1 -1.0034 -0.4035 -2.4761 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172503030.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:42 Heat of formation + Delta-G solvation = -4.853081 kcal Electronic energy + Delta-G solvation = -18133.785931 eV Core-core repulsion = 15626.924712 eV Total energy + Delta-G solvation = -2506.861219 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.78878 -35.63866 -32.91614 -31.31985 -31.01100 -30.48710 -28.60787 -25.22452 -23.91017 -22.44006 -22.11032 -21.12634 -19.32285 -16.66583 -16.35236 -16.22049 -16.01571 -15.44583 -14.37011 -13.92599 -13.28807 -13.16962 -12.70240 -12.43096 -12.25758 -12.03496 -12.00650 -11.94033 -11.78654 -11.54026 -11.02819 -10.98048 -10.79748 -10.76087 -10.37983 -10.34278 -10.09917 -9.89660 -9.62416 -9.52225 -9.08801 -8.82401 -8.18121 -7.51320 -5.84290 -3.85058 3.39813 3.45602 3.49021 4.33069 4.57590 4.70873 4.81563 4.86492 5.21843 5.34841 5.37746 5.48146 5.50093 5.50917 5.52272 5.59859 5.66981 5.72933 5.79788 5.96627 5.99882 6.06134 6.13490 6.20762 6.26087 6.31451 6.40164 6.42503 6.44720 6.53287 6.62165 6.79306 6.98164 7.39542 7.72642 7.75065 7.89805 8.14045 8.29218 8.62945 9.24142 9.77196 11.26825 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.036900 B = 0.006088 C = 0.005753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.633114 B = 4598.329391 C = 4866.161890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.083 3.917 3 H 0.070 0.930 4 C -0.096 4.096 5 C 0.030 3.970 6 C -0.517 4.517 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.276 1.276 14 N -0.511 5.511 15 C 0.049 3.951 16 C -0.106 4.106 17 C -0.108 4.108 18 C -0.110 4.110 19 C 0.089 3.911 20 C -0.160 4.160 21 C -0.114 4.114 22 H 0.051 0.949 23 H 0.073 0.927 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.032 0.968 28 H 0.006 0.994 29 H 0.257 0.743 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.312 1.329 -11.831 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.025 4.025 3 H 0.088 0.912 4 C -0.134 4.134 5 C -0.007 4.007 6 C -0.555 4.555 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.714 3.286 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.201 1.201 14 N -0.233 5.233 15 C -0.078 4.078 16 C -0.125 4.125 17 C -0.146 4.146 18 C -0.148 4.148 19 C -0.020 4.020 20 C -0.199 4.199 21 C -0.152 4.152 22 H 0.070 0.930 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.025 0.975 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.647 1.169 -11.734 16.574 hybrid contribution -0.364 -0.162 0.698 0.804 sum -12.011 1.007 -11.036 16.342 Atomic orbital electron populations 1.23028 0.98836 1.01518 1.02511 1.21892 0.91205 0.97899 0.91538 0.91217 1.21640 1.00550 0.98255 0.92994 1.18984 0.88363 0.96400 0.96951 1.21360 0.91817 1.33891 1.08440 0.93181 1.24995 0.97143 0.95811 0.96483 1.69980 1.02097 1.44455 1.36995 0.86695 0.78255 0.79845 0.83767 1.20818 1.21379 1.20062 1.62040 1.48965 1.09029 1.03280 1.22356 0.96101 0.95324 0.94041 1.21463 0.96869 0.97429 0.96747 1.21550 0.96061 0.99170 0.97818 1.21563 0.99610 0.97077 0.96534 1.22013 0.94266 0.94513 0.91248 1.22858 0.97814 0.97820 1.01439 1.21658 0.97798 0.94955 1.00747 0.92956 0.90879 0.92470 0.93728 0.93589 0.94964 0.97546 0.93298 0.91364 0.91659 0.91179 0.91839 0.92690 0.92157 0.90754 0.90045 0.92261 0.90831 0.92350 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.85 7.37 37.16 0.27 -2.58 16 2 C 0.08 1.45 1.98 -67.71 -0.13 1.31 16 3 H 0.07 1.26 7.67 -51.93 -0.40 0.87 16 4 C -0.10 -2.06 4.67 -26.73 -0.12 -2.19 16 5 C 0.03 0.81 4.86 -27.89 -0.14 0.67 16 6 C -0.52 -15.20 9.11 -34.44 -0.31 -15.52 16 7 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 9 N -0.90 -27.81 13.29 55.43 0.74 -27.08 16 10 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 11 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 N -0.51 -8.66 4.03 -217.43 -0.88 -9.53 16 15 C 0.05 0.74 5.12 -3.87 -0.02 0.72 16 16 C -0.11 -1.28 3.26 -90.35 -0.29 -1.58 16 17 C -0.11 -1.31 5.78 -26.53 -0.15 -1.46 16 18 C -0.11 -1.47 5.94 -26.62 -0.16 -1.63 16 19 C 0.09 1.30 2.89 -66.53 -0.19 1.11 16 20 C -0.16 -1.95 5.21 -25.40 -0.13 -2.08 16 21 C -0.11 -1.27 5.24 -26.54 -0.14 -1.41 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.07 0.93 2.44 -51.93 -0.13 0.80 16 24 H 0.06 0.81 6.47 -51.93 -0.34 0.47 16 25 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.99 7.95 -51.93 -0.41 0.58 16 27 H 0.03 0.93 7.75 -51.93 -0.40 0.53 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.95 4.76 -51.93 -0.25 0.70 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.70 8.14 -51.94 -0.42 0.28 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.08 1.28 7.94 -51.93 -0.41 0.87 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.91 5.47 -51.93 -0.28 0.63 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.67 6.69 -51.93 -0.35 0.32 16 LS Contribution 297.81 15.07 4.49 4.49 Total: -1.00 -30.70 297.81 -9.45 -40.16 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -7.16 Total: -2.30 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: -1.62 Total: -23.06 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: -0.14 Total: -36.61 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.70 -9.45 -40.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503030.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.304 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds