Wall clock time and date at job start Thu Apr 9 2020 12:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46921 * 2 1 4 4 C 1.52999 * 109.46885 * 240.00777 * 2 1 3 5 5 C 1.52997 * 109.46942 * 174.99859 * 4 2 1 6 6 C 1.50705 * 109.47169 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99874 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00224 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00052 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99741 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.47171 * 90.00041 * 10 8 6 12 12 H 1.48499 * 109.47437 * 209.99470 * 10 8 6 13 13 H 1.48504 * 109.47631 * 329.99904 * 10 8 6 14 14 N 1.46891 * 109.47354 * 120.00452 * 2 1 3 15 15 C 1.46739 * 111.00124 * 36.84541 * 14 2 1 16 16 C 1.53085 * 109.78239 * 235.50922 * 15 14 2 17 17 C 1.53213 * 109.08036 * 300.43785 * 16 15 14 18 18 C 1.53172 * 108.90288 * 57.78400 * 17 16 15 19 19 C 1.46735 * 111.00074 * 271.93649 * 14 2 1 20 20 C 1.53050 * 109.64035 * 64.40893 * 19 14 2 21 21 C 1.53167 * 109.14624 * 59.74490 * 20 19 14 22 22 H 1.09004 * 109.46908 * 282.30121 * 1 2 3 23 23 H 1.09003 * 109.47595 * 42.30335 * 1 2 3 24 24 H 1.08998 * 109.46888 * 162.30536 * 1 2 3 25 25 H 1.09007 * 109.47063 * 294.99384 * 4 2 1 26 26 H 1.09003 * 109.47764 * 54.99550 * 4 2 1 27 27 H 1.09001 * 109.47479 * 299.99885 * 5 4 2 28 28 H 1.09002 * 109.47296 * 60.00081 * 5 4 2 29 29 H 0.97008 * 119.99590 * 179.97438 * 9 8 6 30 30 H 1.09000 * 109.42088 * 355.60603 * 15 14 2 31 31 H 1.08997 * 109.41940 * 115.41138 * 15 14 2 32 32 H 1.08996 * 109.66160 * 179.65373 * 16 15 14 33 33 H 1.08999 * 109.56619 * 177.60919 * 17 16 15 34 34 H 1.09001 * 109.56778 * 297.84230 * 17 16 15 35 35 H 1.09003 * 109.52254 * 240.46400 * 18 17 16 36 36 H 1.09003 * 109.52081 * 120.27054 * 18 17 16 37 37 H 1.08994 * 109.41971 * 304.40072 * 19 14 2 38 38 H 1.09002 * 109.52254 * 179.63984 * 20 19 14 39 39 H 1.09000 * 109.52995 * 299.84194 * 20 19 14 40 40 H 1.09003 * 109.56504 * 239.80966 * 21 20 19 41 41 H 1.08997 * 109.65852 * 119.51906 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6131 -1.3138 6 6 4.0672 -1.3239 -2.5441 7 1 3.3687 -1.8042 -3.2133 8 6 5.4184 -1.3601 -2.8159 9 7 5.8568 -1.9808 -3.8892 10 14 6.6264 -0.5287 -1.6588 11 1 7.0621 -1.4959 -0.6195 12 1 7.8082 -0.0630 -2.4280 13 1 5.9694 0.6337 -1.0088 14 7 2.0197 -0.6925 1.1993 15 6 1.1615 -1.8346 1.5344 16 6 0.6616 -1.7020 2.9752 17 6 1.8660 -1.6604 3.9213 18 6 2.7694 -0.4892 3.5235 19 6 2.1514 0.2374 2.3266 20 6 0.7717 0.7747 2.7141 21 6 -0.1302 -0.3974 3.1125 22 1 -0.3633 0.2190 1.0041 23 1 -0.3634 0.7600 -0.6917 24 1 -0.3633 -0.9790 -0.3124 25 1 1.7517 -1.7714 -1.2058 26 1 1.6053 -0.2616 -2.1371 27 1 3.8532 0.4372 -1.3574 28 1 3.9994 -1.0727 -0.4262 29 1 6.8075 -2.0059 -4.0806 30 1 0.3088 -1.8586 0.8557 31 1 1.7310 -2.7583 1.4319 32 1 0.0195 -2.5480 3.2200 33 1 1.5207 -1.5234 4.9460 34 1 2.4223 -2.5948 3.8454 35 1 3.7555 -0.8657 3.2517 36 1 2.8604 0.2016 4.3618 37 1 2.7957 1.0678 2.0381 38 1 0.8709 1.4603 3.5557 39 1 0.3334 1.2995 1.8652 40 1 -1.0003 -0.4278 2.4566 41 1 -0.4558 -0.2750 4.1454 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172503031.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:44 Heat of formation + Delta-G solvation = -2.358108 kcal Electronic energy + Delta-G solvation = -18225.022324 eV Core-core repulsion = 15718.269295 eV Total energy + Delta-G solvation = -2506.753029 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.98561 -35.79627 -32.89504 -31.46663 -31.15890 -30.78150 -28.90912 -25.43379 -24.02189 -22.55854 -22.20761 -20.84508 -19.45408 -16.76431 -16.62311 -16.45028 -16.21581 -15.56215 -14.12976 -14.06279 -13.38970 -13.27682 -12.71428 -12.61928 -12.51604 -12.20136 -12.14541 -12.09220 -11.94727 -11.70805 -11.22483 -11.15058 -10.85581 -10.83584 -10.50406 -10.21904 -9.99249 -9.87415 -9.67907 -9.56291 -9.31247 -8.95926 -8.38925 -7.67770 -5.90937 -3.86475 3.42316 3.48102 3.54865 4.20751 4.58975 4.60782 4.71993 4.77616 5.15774 5.24584 5.28556 5.37811 5.39322 5.40999 5.45128 5.49424 5.58409 5.62983 5.69411 5.87084 5.91391 5.96564 6.03848 6.12041 6.15151 6.20991 6.28424 6.32485 6.33241 6.43133 6.49876 6.64630 6.80262 7.17506 7.54033 7.57962 7.61650 7.79860 7.98472 8.70106 9.15551 9.73624 11.23055 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.032011 B = 0.007076 C = 0.006473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.485246 B = 3955.870042 C = 4324.562077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.079 3.921 3 H 0.070 0.930 4 C -0.088 4.088 5 C -0.006 4.006 6 C -0.515 4.515 7 H 0.067 0.933 8 C 0.063 3.937 9 N -0.911 5.911 10 Si 0.882 3.118 11 H -0.278 1.278 12 H -0.292 1.292 13 H -0.265 1.265 14 N -0.515 5.515 15 C 0.049 3.951 16 C -0.106 4.106 17 C -0.109 4.109 18 C -0.111 4.111 19 C 0.087 3.913 20 C -0.159 4.159 21 C -0.115 4.115 22 H 0.074 0.926 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.006 0.994 28 H 0.026 0.974 29 H 0.260 0.740 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.692 4.182 16.430 20.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.029 4.029 3 H 0.088 0.912 4 C -0.126 4.126 5 C -0.043 4.043 6 C -0.553 4.553 7 H 0.085 0.915 8 C -0.137 4.137 9 N -0.551 5.551 10 Si 0.710 3.290 11 H -0.204 1.204 12 H -0.218 1.218 13 H -0.190 1.190 14 N -0.237 5.237 15 C -0.079 4.079 16 C -0.125 4.125 17 C -0.146 4.146 18 C -0.149 4.149 19 C -0.022 4.022 20 C -0.198 4.198 21 C -0.152 4.152 22 H 0.092 0.908 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.024 0.976 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.051 3.953 16.221 20.022 hybrid contribution -0.064 0.673 0.635 0.927 sum -11.116 4.625 16.856 20.714 Atomic orbital electron populations 1.23021 0.98495 1.01778 1.02643 1.21933 0.91630 0.97862 0.91459 0.91169 1.21463 0.98908 0.98921 0.93305 1.19463 0.91562 0.96083 0.97213 1.21273 0.92784 1.33731 1.07503 0.91462 1.25026 0.98449 0.95105 0.95109 1.69936 1.14357 1.44126 1.26632 0.86735 0.80520 0.80641 0.81096 1.20412 1.21844 1.19004 1.62100 1.49881 1.08559 1.03202 1.22359 0.96279 0.95007 0.94235 1.21475 0.96855 0.97559 0.96627 1.21549 0.96170 0.99002 0.97908 1.21587 0.99598 0.97115 0.96577 1.21567 0.94685 0.94665 0.91309 1.22459 0.97770 0.98011 1.01592 1.21678 0.97830 0.94840 1.00896 0.90795 0.92791 0.92282 0.92968 0.93028 0.97556 0.95551 0.93022 0.91491 0.91166 0.90929 0.92600 0.91810 0.90994 0.92075 0.90245 0.92100 0.90822 0.91935 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.70 7.41 37.16 0.28 -2.43 16 2 C 0.08 1.30 1.98 -67.72 -0.13 1.17 16 3 H 0.07 1.17 7.68 -51.93 -0.40 0.77 16 4 C -0.09 -1.80 4.66 -26.73 -0.12 -1.93 16 5 C -0.01 -0.14 3.93 -27.88 -0.11 -0.25 16 6 C -0.51 -15.29 9.66 -34.44 -0.33 -15.62 16 7 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 8 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 9 N -0.91 -29.10 13.96 55.43 0.77 -28.33 16 10 Si 0.88 22.84 27.47 -169.99 -4.67 18.17 16 11 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 13 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 14 N -0.51 -8.17 4.04 -218.88 -0.88 -9.06 16 15 C 0.05 0.69 5.08 -3.87 -0.02 0.67 16 16 C -0.11 -1.21 3.30 -90.35 -0.30 -1.50 16 17 C -0.11 -1.22 5.76 -26.53 -0.15 -1.38 16 18 C -0.11 -1.37 5.91 -26.62 -0.16 -1.52 16 19 C 0.09 1.18 2.82 -67.75 -0.19 0.99 16 20 C -0.16 -1.80 5.12 -26.62 -0.14 -1.93 16 21 C -0.11 -1.20 5.23 -26.53 -0.14 -1.34 16 22 H 0.07 0.88 2.42 -51.93 -0.13 0.76 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.80 6.46 -51.93 -0.34 0.46 16 25 H 0.05 1.09 7.92 -51.92 -0.41 0.68 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.01 0.16 7.20 -51.93 -0.37 -0.22 16 28 H 0.03 0.67 7.18 -51.93 -0.37 0.30 16 29 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 30 H 0.07 0.92 4.80 -51.93 -0.25 0.68 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.14 7.94 -51.93 -0.41 0.72 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.85 5.45 -51.93 -0.28 0.57 16 40 H 0.06 0.64 6.66 -51.93 -0.35 0.29 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 293.97 15.07 4.43 4.43 Total: -1.00 -31.36 293.97 -9.09 -40.45 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -7.12 Total: -2.40 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -1.62 Total: -23.27 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: -0.11 Total: -37.38 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.67 Total: 18.17 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.36 -9.09 -40.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503031.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.092 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds