Wall clock time and date at job start Thu Apr 9 2020 12:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46921 * 2 1 4 4 C 1.52999 * 109.46885 * 240.00777 * 2 1 3 5 5 C 1.52997 * 109.46942 * 174.99859 * 4 2 1 6 6 C 1.50705 * 109.47169 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99874 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00224 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00052 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99741 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.47171 * 90.00041 * 10 8 6 12 12 H 1.48499 * 109.47437 * 209.99470 * 10 8 6 13 13 H 1.48504 * 109.47631 * 329.99904 * 10 8 6 14 14 N 1.46891 * 109.47354 * 120.00452 * 2 1 3 15 15 C 1.46739 * 111.00124 * 36.84541 * 14 2 1 16 16 C 1.53085 * 109.78239 * 235.50922 * 15 14 2 17 17 C 1.53213 * 109.08036 * 300.43785 * 16 15 14 18 18 C 1.53172 * 108.90288 * 57.78400 * 17 16 15 19 19 C 1.46735 * 111.00074 * 271.93649 * 14 2 1 20 20 C 1.53050 * 109.64035 * 64.40893 * 19 14 2 21 21 C 1.53167 * 109.14624 * 59.74490 * 20 19 14 22 22 H 1.09004 * 109.46908 * 282.30121 * 1 2 3 23 23 H 1.09003 * 109.47595 * 42.30335 * 1 2 3 24 24 H 1.08998 * 109.46888 * 162.30536 * 1 2 3 25 25 H 1.09007 * 109.47063 * 294.99384 * 4 2 1 26 26 H 1.09003 * 109.47764 * 54.99550 * 4 2 1 27 27 H 1.09001 * 109.47479 * 299.99885 * 5 4 2 28 28 H 1.09002 * 109.47296 * 60.00081 * 5 4 2 29 29 H 0.97008 * 119.99590 * 179.97438 * 9 8 6 30 30 H 1.09000 * 109.42088 * 355.60603 * 15 14 2 31 31 H 1.08997 * 109.41940 * 115.41138 * 15 14 2 32 32 H 1.08996 * 109.66160 * 179.65373 * 16 15 14 33 33 H 1.08999 * 109.56619 * 177.60919 * 17 16 15 34 34 H 1.09001 * 109.56778 * 297.84230 * 17 16 15 35 35 H 1.09003 * 109.52254 * 240.46400 * 18 17 16 36 36 H 1.09003 * 109.52081 * 120.27054 * 18 17 16 37 37 H 1.08994 * 109.41971 * 304.40072 * 19 14 2 38 38 H 1.09002 * 109.52254 * 179.63984 * 20 19 14 39 39 H 1.09000 * 109.52995 * 299.84194 * 20 19 14 40 40 H 1.09003 * 109.56504 * 239.80966 * 21 20 19 41 41 H 1.08997 * 109.65852 * 119.51906 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6131 -1.3138 6 6 4.0672 -1.3239 -2.5441 7 1 3.3687 -1.8042 -3.2133 8 6 5.4184 -1.3601 -2.8159 9 7 5.8568 -1.9808 -3.8892 10 14 6.6264 -0.5287 -1.6588 11 1 7.0621 -1.4959 -0.6195 12 1 7.8082 -0.0630 -2.4280 13 1 5.9694 0.6337 -1.0088 14 7 2.0197 -0.6925 1.1993 15 6 1.1615 -1.8346 1.5344 16 6 0.6616 -1.7020 2.9752 17 6 1.8660 -1.6604 3.9213 18 6 2.7694 -0.4892 3.5235 19 6 2.1514 0.2374 2.3266 20 6 0.7717 0.7747 2.7141 21 6 -0.1302 -0.3974 3.1125 22 1 -0.3633 0.2190 1.0041 23 1 -0.3634 0.7600 -0.6917 24 1 -0.3633 -0.9790 -0.3124 25 1 1.7517 -1.7714 -1.2058 26 1 1.6053 -0.2616 -2.1371 27 1 3.8532 0.4372 -1.3574 28 1 3.9994 -1.0727 -0.4262 29 1 6.8075 -2.0059 -4.0806 30 1 0.3088 -1.8586 0.8557 31 1 1.7310 -2.7583 1.4319 32 1 0.0195 -2.5480 3.2200 33 1 1.5207 -1.5234 4.9460 34 1 2.4223 -2.5948 3.8454 35 1 3.7555 -0.8657 3.2517 36 1 2.8604 0.2016 4.3618 37 1 2.7957 1.0678 2.0381 38 1 0.8709 1.4603 3.5557 39 1 0.3334 1.2995 1.8652 40 1 -1.0003 -0.4278 2.4566 41 1 -0.4558 -0.2750 4.1454 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172503031.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:44 Heat of formation + Delta-G solvation = -21.423272 kcal Electronic energy + Delta-G solvation = -18225.849052 eV Core-core repulsion = 15718.269295 eV Total energy + Delta-G solvation = -2507.579757 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.01375 -37.15985 -34.98359 -32.70852 -32.36211 -32.02408 -30.25258 -27.16944 -25.29697 -23.42138 -23.17848 -22.71023 -20.91309 -18.82612 -17.71981 -17.56585 -17.31218 -16.54927 -16.29063 -15.29934 -14.85185 -14.56270 -14.37398 -14.08269 -13.91612 -13.48277 -13.15796 -13.09610 -12.96403 -12.88815 -12.83908 -12.65198 -12.30903 -11.91479 -11.82461 -11.81340 -11.49926 -11.30093 -11.13459 -11.06103 -10.92506 -10.73086 -10.63458 -8.82846 -8.27380 -6.29258 1.35310 1.36860 1.50369 2.38243 3.07937 3.09373 3.70610 3.80494 3.85547 4.03752 4.20879 4.27830 4.40214 4.44135 4.48150 4.52399 4.53333 4.64930 4.71105 4.74975 4.84735 4.87182 4.95432 4.99415 5.10564 5.10677 5.16273 5.26334 5.26862 5.36415 5.38612 5.41768 5.47749 5.51389 5.59769 5.70983 5.77225 6.33464 6.43566 6.49203 6.79034 7.35026 8.89892 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.032011 B = 0.007076 C = 0.006473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.485246 B = 3955.870042 C = 4324.562077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.088 3.912 3 H 0.069 0.931 4 C -0.082 4.082 5 C 0.005 3.995 6 C -0.530 4.530 7 H 0.027 0.973 8 C 0.002 3.998 9 N -0.955 5.955 10 Si 0.954 3.046 11 H -0.270 1.270 12 H -0.283 1.283 13 H -0.250 1.250 14 N -0.542 5.542 15 C 0.046 3.954 16 C -0.101 4.101 17 C -0.107 4.107 18 C -0.111 4.111 19 C 0.082 3.918 20 C -0.154 4.154 21 C -0.111 4.111 22 H 0.095 0.905 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.039 0.961 26 H 0.046 0.954 27 H 0.007 0.993 28 H 0.022 0.978 29 H 0.265 0.735 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.663 5.616 19.258 23.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.021 4.021 3 H 0.087 0.913 4 C -0.120 4.120 5 C -0.033 4.033 6 C -0.568 4.568 7 H 0.045 0.955 8 C -0.194 4.194 9 N -0.597 5.597 10 Si 0.778 3.222 11 H -0.195 1.195 12 H -0.209 1.209 13 H -0.173 1.173 14 N -0.265 5.265 15 C -0.081 4.081 16 C -0.121 4.121 17 C -0.145 4.145 18 C -0.148 4.148 19 C -0.027 4.027 20 C -0.193 4.193 21 C -0.148 4.148 22 H 0.113 0.887 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.025 0.975 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.042 5.390 19.058 23.179 hybrid contribution 0.246 0.150 -0.338 0.444 sum -11.796 5.540 18.720 22.809 Atomic orbital electron populations 1.22926 0.95870 1.01998 1.04196 1.21693 0.93652 0.96840 0.89881 0.91310 1.21347 0.95991 0.98873 0.95797 1.19326 0.94508 0.94995 0.94449 1.21647 0.92597 1.33873 1.08643 0.95454 1.26005 1.00652 0.95816 0.96898 1.70084 1.15134 1.45732 1.28720 0.85602 0.77844 0.80001 0.78799 1.19532 1.20904 1.17326 1.61937 1.50961 1.09635 1.03966 1.22348 0.95728 0.93490 0.96522 1.21459 0.97192 0.98977 0.94426 1.21549 0.95820 0.98015 0.99078 1.21595 0.98574 0.97890 0.96779 1.21626 0.96208 0.94016 0.90836 1.22390 0.96159 0.98549 1.02165 1.21672 0.97426 0.93469 1.02266 0.88722 0.91973 0.92531 0.94222 0.93498 0.97500 0.95998 0.92652 0.91328 0.93506 0.89475 0.90340 0.92838 0.93261 0.89954 0.91467 0.90376 0.91062 0.91427 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.78 7.41 71.98 0.53 -4.24 16 2 C 0.09 2.80 1.98 44.92 0.09 2.89 16 3 H 0.07 2.21 7.68 -2.39 -0.02 2.19 16 4 C -0.08 -3.41 4.66 30.59 0.14 -3.26 16 5 C 0.00 0.23 3.93 29.85 0.12 0.35 16 6 C -0.53 -32.50 9.66 25.60 0.25 -32.25 16 7 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 8 C 0.00 0.13 5.47 84.66 0.46 0.60 16 9 N -0.96 -62.62 13.96 21.45 0.30 -62.32 16 10 Si 0.95 47.37 27.47 68.60 1.88 49.26 16 11 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 12 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 13 H -0.25 -11.66 6.54 99.48 0.65 -11.01 16 14 N -0.54 -16.71 4.04 -846.41 -3.42 -20.13 16 15 C 0.05 1.27 5.08 86.36 0.44 1.70 16 16 C -0.10 -2.03 3.30 -10.62 -0.04 -2.07 16 17 C -0.11 -2.13 5.76 30.72 0.18 -1.96 16 18 C -0.11 -2.49 5.91 30.67 0.18 -2.31 16 19 C 0.08 2.05 2.82 44.98 0.13 2.18 16 20 C -0.15 -2.93 5.12 30.67 0.16 -2.78 16 21 C -0.11 -1.87 5.23 30.72 0.16 -1.71 16 22 H 0.09 1.98 2.42 -2.39 -0.01 1.97 16 23 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.06 1.44 6.46 -2.39 -0.02 1.43 16 25 H 0.04 1.71 7.92 -2.38 -0.02 1.69 16 26 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.01 0.34 7.20 -2.39 -0.02 0.32 16 28 H 0.02 1.11 7.18 -2.39 -0.02 1.10 16 29 H 0.26 16.14 8.31 -92.70 -0.77 15.37 16 30 H 0.07 1.82 4.80 -2.39 -0.01 1.81 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.82 7.94 -2.39 -0.02 1.80 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.40 5.45 -2.39 -0.01 1.39 16 40 H 0.07 1.10 6.66 -2.39 -0.02 1.08 16 41 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -69.06 293.97 2.49 -66.57 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.92 Total: 9.49 kcal Atomic # 6 Polarization: -45.66 SS G_CDS: 2.80 Total: -42.86 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -3.12 Total: -82.45 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 1.88 Total: 49.26 kcal Total: -69.06 2.49 -66.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503031.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.145 kcal (2) G-P(sol) polarization free energy of solvation -69.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds