Wall clock time and date at job start Thu Apr 9 2020 12:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.50696 * 109.47087 * 120.00096 * 2 1 3 5 5 H 1.08003 * 120.00092 * 120.00284 * 4 2 1 6 6 C 1.37879 * 120.00258 * 299.99637 * 4 2 1 7 7 N 1.31512 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00053 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47198 * 90.00383 * 8 6 4 10 10 H 1.48506 * 109.47350 * 210.00533 * 8 6 4 11 11 H 1.48502 * 109.47345 * 330.00247 * 8 6 4 12 12 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 84.72116 * 12 2 1 14 14 O 1.21593 * 119.99949 * 0.28071 * 13 12 2 15 15 N 1.34777 * 120.00128 * 180.27942 * 13 12 2 16 16 C 1.39503 * 120.00066 * 180.02562 * 15 13 12 17 17 C 1.36102 * 126.21451 * 359.68749 * 16 15 13 18 18 C 1.39767 * 107.82483 * 179.90420 * 17 16 15 19 19 N 1.30845 * 108.32180 * 0.36256 * 18 17 16 20 20 N 1.35247 * 126.21215 * 179.97438 * 16 15 13 21 21 C 1.46500 * 126.04822 * 359.92748 * 20 16 15 22 22 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 23 23 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 25 25 H 0.96996 * 120.00441 * 179.97438 * 7 6 4 26 26 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 27 27 H 0.97000 * 119.99549 * 359.97438 * 15 13 12 28 28 H 1.08000 * 126.08504 * 0.03367 * 17 16 15 29 29 H 1.08001 * 125.84063 * 180.14002 * 18 17 16 30 30 H 1.08997 * 109.46825 * 89.99724 * 21 20 16 31 31 H 1.08997 * 109.47207 * 209.99833 * 21 20 16 32 32 H 1.08998 * 109.46929 * 330.00275 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6035 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5461 4.4123 10 1 1.3431 -0.9494 5.1120 11 1 2.4858 -2.5663 3.7119 12 7 2.0184 -0.6906 -1.1962 13 6 2.1417 -0.0196 -2.3585 14 8 1.8526 1.1602 -2.4130 15 7 2.5857 -0.6562 -3.4603 16 6 2.7139 0.0385 -4.6633 17 6 2.4228 1.3521 -4.8682 18 6 2.6933 1.6464 -6.2075 19 7 3.1220 0.5559 -6.7898 20 7 3.1449 -0.4725 -5.8390 21 6 3.5625 -1.8565 -6.0761 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7083 1.1608 3.4844 26 1 2.2490 -1.6318 -1.1527 27 1 2.8167 -1.5973 -3.4167 28 1 2.0511 2.0444 -4.1272 29 1 2.5666 2.6085 -6.6816 30 1 2.6999 -2.4492 -6.3807 31 1 4.3153 -1.8790 -6.8641 32 1 3.9830 -2.2711 -5.1599 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124629607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:58 Heat of formation + Delta-G solvation = 57.590540 kcal Electronic energy + Delta-G solvation = -16659.647930 eV Core-core repulsion = 13850.695120 eV Total energy + Delta-G solvation = -2808.952810 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.23579 -39.26484 -35.26802 -34.39762 -32.93575 -32.46055 -29.45377 -27.95837 -26.68397 -25.30224 -22.55872 -21.19504 -20.22860 -19.76900 -18.25112 -17.56837 -15.91815 -15.72976 -15.36172 -14.84386 -14.54869 -14.20022 -13.51914 -13.40846 -13.15581 -12.77134 -12.45789 -12.33025 -11.85776 -11.17627 -11.08575 -10.90709 -10.63104 -10.50454 -10.29933 -10.27265 -9.43085 -9.11432 -8.83579 -8.62001 -8.16882 -7.67722 -6.17381 -4.27024 2.03432 2.24173 3.11044 3.18104 3.21846 3.28992 3.30654 3.82383 4.27571 4.52581 4.75294 5.01922 5.15474 5.19451 5.27362 5.64450 5.80561 6.23485 6.39528 6.72798 6.90627 6.96181 7.02935 7.12152 7.28987 7.40498 7.55747 7.71872 7.86358 7.97843 8.09669 8.62662 8.75636 9.10916 9.40803 10.88691 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.050377 B = 0.005078 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.678990 B = 5513.133360 C = 5838.754399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.281 3.719 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.714 5.714 13 C 0.700 3.300 14 O -0.565 6.565 15 N -0.670 5.670 16 C 0.336 3.664 17 C -0.287 4.287 18 C 0.060 3.940 19 N -0.309 5.309 20 N -0.400 5.400 21 C 0.102 3.898 22 H 0.017 0.983 23 H 0.026 0.974 24 H 0.092 0.908 25 H 0.265 0.735 26 H 0.387 0.613 27 H 0.400 0.600 28 H 0.176 0.824 29 H 0.183 0.817 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.565 -5.775 -12.272 14.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.179 3.821 3 H 0.070 0.930 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.366 5.366 13 C 0.400 3.600 14 O -0.441 6.441 15 N -0.321 5.321 16 C 0.115 3.885 17 C -0.319 4.319 18 C -0.125 4.125 19 N -0.131 5.131 20 N -0.189 5.189 21 C -0.040 4.040 22 H 0.036 0.964 23 H 0.045 0.955 24 H 0.110 0.890 25 H 0.075 0.925 26 H 0.219 0.781 27 H 0.235 0.765 28 H 0.193 0.807 29 H 0.200 0.800 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.619 -5.221 -13.117 14.574 hybrid contribution 0.281 -1.239 1.641 2.075 sum 3.900 -6.460 -11.475 13.734 Atomic orbital electron populations 1.22116 0.98377 0.99188 1.01108 1.18745 0.90954 0.93829 0.78548 0.93047 1.21176 1.32698 1.13373 0.90173 0.92059 1.24873 0.94748 0.94962 0.99037 1.69895 1.35587 1.22382 1.24025 0.86421 0.78628 0.79756 0.82108 1.20528 1.21024 1.19887 1.45860 1.68585 1.13411 1.08731 1.15893 0.78882 0.85407 0.79865 1.90828 1.55848 1.13968 1.83408 1.42219 1.69783 1.13313 1.06777 1.17759 0.98411 0.91784 0.80549 1.21726 1.17214 0.94797 0.98144 1.23748 0.97629 0.97372 0.93779 1.77375 1.27538 0.95696 1.12504 1.48415 1.55176 1.09773 1.05492 1.21730 1.01226 0.77691 1.03303 0.96430 0.95471 0.88979 0.92458 0.78109 0.76530 0.80674 0.79970 0.91060 0.89143 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 2 C 0.28 6.91 2.56 -69.09 -0.18 6.73 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.54 -13.72 8.73 -34.44 -0.30 -14.02 16 5 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.27 11.32 55.43 0.63 -23.64 16 8 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 12 N -0.71 -14.18 5.07 -59.82 -0.30 -14.49 16 13 C 0.70 13.80 8.49 -86.92 -0.74 13.06 16 14 O -0.56 -13.24 13.13 5.28 0.07 -13.17 16 15 N -0.67 -10.23 5.42 -15.84 -0.09 -10.32 16 16 C 0.34 5.45 7.66 -153.14 -1.17 4.27 16 17 C -0.29 -4.97 9.65 -39.78 -0.38 -5.36 16 18 C 0.06 0.89 12.01 -17.40 -0.21 0.68 16 19 N -0.31 -4.72 12.56 30.60 0.38 -4.34 16 20 N -0.40 -5.60 4.02 -67.18 -0.27 -5.87 16 21 C 0.10 0.90 11.28 59.85 0.68 1.58 16 22 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 25 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.39 6.42 8.55 -40.82 -0.35 6.07 16 27 H 0.40 4.49 7.98 -40.82 -0.33 4.16 16 28 H 0.18 3.42 5.82 -52.49 -0.31 3.11 16 29 H 0.18 2.00 8.06 -52.49 -0.42 1.58 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.53 7.50 -51.93 -0.39 0.14 16 LS Contribution 277.52 15.07 4.18 4.18 Total: -1.00 -31.83 277.52 -6.21 -38.04 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -3.73 Total: 9.16 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -2.06 Total: 5.35 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 0.35 Total: -58.65 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.07 Total: -13.17 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.83 -6.21 -38.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124629607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.627 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds