Wall clock time and date at job start Thu Apr 9 2020 12:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47019 * 299.99493 * 3 2 1 6 6 H 1.48498 * 109.47326 * 59.99268 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.38225 * 120.01131 * 99.72481 * 12 11 10 14 14 C 1.38220 * 120.02420 * 179.71821 * 13 12 11 15 15 C 1.50697 * 119.97479 * 180.27628 * 14 13 12 16 16 O 1.42899 * 109.47344 * 270.28151 * 15 14 13 17 17 C 1.38270 * 120.05092 * 0.55854 * 14 13 12 18 18 C 1.38169 * 120.02376 * 359.71979 * 17 14 13 19 19 C 1.38431 * 120.01389 * 279.99880 * 12 11 10 20 20 F 1.35103 * 120.02702 * 0.02765 * 19 12 11 21 21 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 23 23 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 24 24 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 25 25 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 26 26 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 27 27 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 28 28 H 1.08001 * 119.98449 * 0.02562 * 13 12 11 29 29 H 1.09006 * 109.47186 * 30.27922 * 15 14 13 30 30 H 1.09000 * 109.47236 * 150.28131 * 15 14 13 31 31 H 0.96701 * 114.00439 * 180.02562 * 16 15 14 32 32 H 1.08000 * 119.99005 * 179.69687 * 17 14 13 33 33 H 1.08004 * 120.01252 * 179.97438 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0005 13 6 2.7562 -6.7893 1.1801 14 6 3.6499 -7.8436 1.1788 15 6 3.9676 -8.5629 2.4644 16 8 5.0767 -7.9281 3.1040 17 6 4.2572 -8.2352 -0.0001 18 6 3.9667 -7.5764 -1.1793 19 6 3.0670 -6.5236 -1.1803 20 9 2.7826 -5.8785 -2.3328 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8903 24 1 2.8720 -3.6043 0.8905 25 1 2.8720 -3.6042 -0.8894 26 1 0.8534 -5.0451 -0.8886 27 1 0.8541 -5.0445 0.8914 28 1 2.2855 -6.4817 2.1022 29 1 3.1001 -8.5292 3.1236 30 1 4.2190 -9.6011 2.2474 31 1 5.3373 -8.3395 3.9394 32 1 4.9591 -9.0560 0.0010 33 1 4.4415 -7.8821 -2.1000 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065255.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:29 Heat of formation + Delta-G solvation = -96.652598 kcal Electronic energy + Delta-G solvation = -16100.438334 eV Core-core repulsion = 13232.584328 eV Total energy + Delta-G solvation = -2867.854007 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.111 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.65531 -39.39626 -36.79559 -34.79282 -32.68971 -31.28058 -30.44856 -26.88115 -25.79962 -23.74253 -22.32400 -20.76197 -19.88423 -17.65080 -17.39331 -16.63672 -16.23797 -15.44180 -15.34003 -14.47607 -14.41741 -14.08999 -13.83655 -13.26057 -13.07272 -12.90253 -12.53683 -12.09593 -11.83499 -11.44062 -11.14678 -11.01279 -10.75039 -10.62587 -10.43079 -10.27584 -9.63886 -9.36199 -9.07812 -8.79673 -8.39209 -8.30262 -5.95339 -3.97096 1.12205 1.29659 3.34591 3.41693 3.46729 3.49587 4.29495 4.40362 4.50493 4.65279 4.81183 4.94023 5.04136 5.13106 5.29356 5.40506 5.48853 5.70893 5.89255 6.03414 6.08258 6.19241 6.34834 6.40392 6.47281 6.81442 6.92332 6.95388 7.18472 7.40471 7.73148 7.87668 8.05245 8.48642 9.10100 9.66712 11.16142 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.029224 B = 0.004925 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.893504 B = 5683.999998 C = 6132.492503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.103 4.103 11 C -0.084 4.084 12 C -0.101 4.101 13 C -0.071 4.071 14 C -0.108 4.108 15 C 0.121 3.879 16 O -0.566 6.566 17 C -0.085 4.085 18 C -0.158 4.158 19 C 0.106 3.894 20 F -0.133 7.133 21 H 0.259 0.741 22 H 0.016 0.984 23 H 0.016 0.984 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.132 0.868 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.378 0.622 32 H 0.128 0.872 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.801 -19.578 3.212 20.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.141 4.141 11 C -0.121 4.121 12 C -0.102 4.102 13 C -0.089 4.089 14 C -0.109 4.109 15 C 0.043 3.957 16 O -0.372 6.372 17 C -0.103 4.103 18 C -0.176 4.176 19 C 0.087 3.913 20 F -0.111 7.111 21 H 0.069 0.931 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.150 0.850 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.225 0.775 32 H 0.146 0.854 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.597 -19.047 2.637 20.329 hybrid contribution 0.420 0.694 0.211 0.838 sum 7.017 -18.353 2.848 19.854 Atomic orbital electron populations 1.69979 1.06038 1.26403 1.51223 1.25022 0.94842 0.99222 0.95405 0.86549 0.80177 0.83835 0.77540 1.19738 1.21016 1.21025 1.21308 0.93105 0.91092 1.50111 0.92675 1.19113 0.93967 0.91272 0.97236 1.21626 0.99089 0.92778 1.00618 1.20764 0.95984 0.92379 1.02990 1.20286 0.99582 0.98531 0.91801 1.20871 0.96999 0.93684 0.97367 1.19595 0.98804 0.98192 0.94284 1.20928 0.89143 0.94319 0.91273 1.86617 1.50898 1.59233 1.40416 1.20753 0.98558 0.99697 0.91304 1.21073 0.99867 0.96949 0.99760 1.17649 0.98129 0.93506 0.82038 1.91515 1.92202 1.80353 1.47079 0.93119 0.96523 0.96547 0.93206 0.93234 0.90938 0.90844 0.85002 0.92615 0.92844 0.77463 0.85430 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.29 55.43 0.74 -26.85 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.27 29.54 -169.99 -5.02 17.24 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.52 -15.25 9.11 -34.44 -0.31 -15.56 16 8 H 0.05 1.59 7.74 -52.48 -0.41 1.19 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.10 -2.28 5.13 -26.74 -0.14 -2.41 16 11 C -0.08 -1.52 5.07 -27.88 -0.14 -1.66 16 12 C -0.10 -1.63 5.14 -104.55 -0.54 -2.17 16 13 C -0.07 -1.00 9.32 -39.59 -0.37 -1.36 16 14 C -0.11 -1.33 5.51 -104.62 -0.58 -1.91 16 15 C 0.12 1.11 7.17 36.00 0.26 1.37 16 16 O -0.57 -5.85 13.64 -35.23 -0.48 -6.33 16 17 C -0.08 -0.99 9.70 -39.59 -0.38 -1.37 16 18 C -0.16 -2.04 10.03 -39.52 -0.40 -2.43 16 19 C 0.11 1.68 7.24 -39.42 -0.29 1.39 16 20 F -0.13 -2.31 16.66 2.25 0.04 -2.27 16 21 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.07 1.33 7.95 -51.93 -0.41 0.91 16 27 H 0.07 1.24 8.01 -51.93 -0.42 0.82 16 28 H 0.13 1.67 8.04 -52.49 -0.42 1.25 16 29 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 30 H 0.05 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.38 1.90 9.12 45.56 0.42 2.31 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 292.32 15.07 4.41 4.41 Total: -1.00 -33.49 292.32 -7.19 -40.69 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -3.75 Total: -2.75 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -3.12 Total: -24.14 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 0.74 Total: -26.85 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.48 Total: -6.33 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.49 -7.19 -40.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065255.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.965 kcal (2) G-P(sol) polarization free energy of solvation -33.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds