Wall clock time and date at job start Thu Apr 9 2020 12:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46912 * 179.97438 * 11 10 9 13 13 C 1.38217 * 119.98921 * 269.72555 * 12 11 10 14 14 C 1.38441 * 119.97377 * 179.74715 * 13 12 11 15 15 F 1.35101 * 120.02198 * 180.24787 * 14 13 12 16 16 C 1.38476 * 119.94841 * 0.50375 * 14 13 12 17 17 C 1.38181 * 119.97590 * 359.74669 * 16 14 13 18 18 C 1.50698 * 119.98548 * 179.97438 * 17 16 14 19 19 O 1.42898 * 109.47457 * 270.01861 * 18 17 16 20 20 C 1.38230 * 119.98527 * 89.99613 * 12 11 10 21 21 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 23 23 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 24 24 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 25 25 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 26 26 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 27 27 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 28 28 H 1.08000 * 120.00990 * 359.97438 * 13 12 11 29 29 H 1.08003 * 120.01477 * 179.76734 * 16 14 13 30 30 H 1.08999 * 109.47544 * 30.02442 * 18 17 16 31 31 H 1.09001 * 109.47032 * 150.02225 * 18 17 16 32 32 H 0.96694 * 114.00295 * 179.97438 * 19 18 17 33 33 H 1.07993 * 119.97282 * 0.02562 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 6 2.4593 -6.1326 -0.0007 13 6 2.9038 -6.6608 -1.1981 14 6 3.8074 -7.7097 -1.1984 15 9 4.2464 -8.2234 -2.3682 16 6 4.2569 -8.2352 0.0013 17 6 3.8071 -7.7089 1.1972 18 6 4.2957 -8.2811 2.5030 19 8 3.4260 -9.3372 2.9154 20 6 2.9083 -6.6583 1.1962 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5566 0.8902 24 1 2.8718 -3.6044 0.8905 25 1 2.8718 -3.6044 -0.8895 26 1 0.8531 -5.0451 0.8897 27 1 0.8537 -5.0446 -0.8902 28 1 2.5492 -6.2531 -2.1332 29 1 4.9589 -9.0559 0.0024 30 1 5.3052 -8.6712 2.3738 31 1 4.3029 -7.4990 3.2623 32 1 3.6807 -9.7531 3.7504 33 1 2.5568 -6.2480 2.1313 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065807.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:34 Heat of formation + Delta-G solvation = -98.769552 kcal Electronic energy + Delta-G solvation = -15872.907795 eV Core-core repulsion = 13004.961990 eV Total energy + Delta-G solvation = -2867.945805 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.84253 -39.47413 -36.90733 -34.75128 -32.75068 -31.30981 -30.25497 -26.91484 -26.25390 -23.76435 -22.01172 -20.89265 -19.97311 -17.68230 -16.98983 -16.63493 -16.18905 -16.12714 -15.52738 -14.57127 -14.44497 -14.38974 -13.89677 -13.32511 -12.95033 -12.82583 -12.39224 -12.19428 -11.78357 -11.53843 -11.24897 -11.01774 -10.79044 -10.66388 -10.47323 -10.31778 -9.70604 -9.41797 -9.12301 -8.77374 -8.49036 -8.35101 -6.00090 -4.02335 1.13598 1.24854 3.30941 3.38463 3.42709 3.49862 4.10058 4.38151 4.46130 4.67980 4.76654 5.02343 5.10757 5.20174 5.25459 5.35850 5.44623 5.63751 5.82305 6.02749 6.06175 6.15036 6.34279 6.39376 6.47470 6.81640 6.85837 6.93984 7.11554 7.35638 7.67814 7.81590 8.00175 8.42911 9.05092 9.61894 11.11256 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.029778 B = 0.004467 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.054801 B = 6266.390291 C = 6706.258557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.103 4.103 11 C -0.087 4.087 12 C -0.037 4.037 13 C -0.147 4.147 14 C 0.095 3.905 15 F -0.143 7.143 16 C -0.149 4.149 17 C -0.067 4.067 18 C 0.118 3.882 19 O -0.567 6.567 20 C -0.108 4.108 21 H 0.260 0.740 22 H 0.016 0.984 23 H 0.017 0.983 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.137 0.863 29 H 0.130 0.870 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.380 0.620 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.807 -17.107 3.585 19.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.141 4.141 11 C -0.124 4.124 12 C -0.037 4.037 13 C -0.165 4.165 14 C 0.076 3.924 15 F -0.122 7.122 16 C -0.168 4.168 17 C -0.068 4.068 18 C 0.041 3.959 19 O -0.372 6.372 20 C -0.126 4.126 21 H 0.069 0.931 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.155 0.845 29 H 0.148 0.852 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.227 0.773 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.377 -16.844 2.982 18.629 hybrid contribution 0.852 0.741 0.228 1.152 sum 8.229 -16.104 3.210 18.367 Atomic orbital electron populations 1.69977 1.06047 1.26469 1.51037 1.25025 0.94839 0.99246 0.95357 0.86553 0.80138 0.83844 0.77583 1.19751 1.21005 1.21017 1.21300 0.93086 0.91095 1.50345 0.92667 1.19130 0.94000 0.91286 0.97319 1.21642 0.99043 0.92743 1.00652 1.20861 0.96018 0.92430 1.03081 1.20057 0.96406 0.95590 0.91668 1.21147 0.98776 0.96742 0.99885 1.17617 0.97830 0.95886 0.81057 1.91481 1.88280 1.86145 1.46257 1.20860 1.03283 1.01802 0.90833 1.19352 0.97788 0.96163 0.93452 1.20964 0.92274 0.89607 0.93039 1.86576 1.54606 1.51692 1.44375 1.21056 0.96867 0.96228 0.98478 0.93070 0.96522 0.96497 0.93175 0.93203 0.90831 0.90946 0.84547 0.85183 0.92649 0.92162 0.77324 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.50 4.97 -27.89 -0.14 0.36 16 10 C -0.10 -2.09 5.14 -26.73 -0.14 -2.23 16 11 C -0.09 -1.44 5.35 -27.88 -0.15 -1.59 16 12 C -0.04 -0.56 5.13 -104.63 -0.54 -1.10 16 13 C -0.15 -2.15 9.68 -39.51 -0.38 -2.53 16 14 C 0.10 1.34 7.30 -39.42 -0.29 1.06 16 15 F -0.14 -2.04 17.27 2.25 0.04 -2.00 16 16 C -0.15 -1.91 9.68 -39.51 -0.38 -2.29 16 17 C -0.07 -0.85 5.51 -104.63 -0.58 -1.43 16 18 C 0.12 1.12 7.17 36.00 0.26 1.38 16 19 O -0.57 -5.61 13.64 -35.23 -0.48 -6.09 16 20 C -0.11 -1.50 9.36 -39.57 -0.37 -1.87 16 21 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 27 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 28 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 29 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 30 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.38 1.75 9.12 45.56 0.42 2.17 16 33 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 293.15 15.07 4.42 4.42 Total: -1.00 -32.00 293.15 -7.19 -39.19 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -3.76 Total: -2.21 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -3.11 Total: -23.77 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.74 Total: -26.20 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.48 Total: -6.09 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.00 -7.19 -39.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065807.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.582 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds