Wall clock time and date at job start Thu Apr 9 2020 12:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36878 * 126.39866 * 2 1 4 4 C 1.34668 * 106.81969 * 180.02562 * 3 2 1 5 5 N 1.34128 * 108.02037 * 359.77924 * 4 3 2 6 6 C 1.30505 * 109.25504 * 0.37178 * 5 4 3 7 7 C 1.50700 * 125.64889 * 179.89798 * 6 5 4 8 8 N 1.46498 * 109.46769 * 269.68506 * 7 6 5 9 9 C 1.34777 * 119.99828 * 179.72341 * 8 7 6 10 10 O 1.21593 * 119.99949 * 0.28071 * 9 8 7 11 11 N 1.34777 * 120.00128 * 180.27942 * 9 8 7 12 12 C 1.46499 * 120.00065 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47138 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00043 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00213 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99609 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00201 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47001 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47188 * 120.00103 * 17 15 13 20 20 H 1.48497 * 109.47104 * 240.00206 * 17 15 13 21 21 H 1.09006 * 109.47401 * 269.97267 * 1 2 3 22 22 H 1.08992 * 109.47260 * 29.97623 * 1 2 3 23 23 H 1.09006 * 109.47028 * 149.97921 * 1 2 3 24 24 H 1.07993 * 126.59276 * 0.05515 * 3 2 1 25 25 H 1.07997 * 125.99203 * 180.02562 * 4 3 2 26 26 H 1.09004 * 109.47210 * 149.68864 * 7 6 5 27 27 H 1.08994 * 109.47121 * 29.68833 * 7 6 5 28 28 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 29 29 H 0.97000 * 119.99549 * 359.97438 * 11 9 8 30 30 H 1.09000 * 109.47602 * 299.99940 * 12 11 9 31 31 H 1.09006 * 109.46868 * 59.99976 * 12 11 9 32 32 H 0.96997 * 119.99506 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1017 0.0000 4 6 3.5460 0.6505 -0.0006 5 7 3.5095 -0.6903 0.0040 6 6 2.2663 -1.0870 -0.0006 7 6 1.8018 -2.5207 0.0000 8 7 1.6500 -2.9854 -1.3810 9 6 1.2467 -4.2477 -1.6267 10 8 1.0040 -4.9992 -0.7022 11 7 1.1125 -4.6770 -2.8972 12 6 0.6736 -6.0489 -3.1644 13 6 0.6049 -6.2735 -4.6530 14 1 0.8628 -5.4744 -5.3321 15 6 0.2138 -7.4995 -5.1479 16 7 -0.0998 -8.4728 -4.3208 17 14 0.1293 -7.7781 -6.9930 18 1 0.5295 -6.5351 -7.7001 19 1 1.0506 -8.8800 -7.3700 20 1 -1.2589 -8.1408 -7.3758 21 1 -0.3634 -0.0005 1.0277 22 1 -0.3633 0.8901 -0.5134 23 1 -0.3633 -0.8899 -0.5142 24 1 1.9613 2.1344 0.0008 25 1 4.4368 1.2611 -0.0003 26 1 0.8436 -2.5919 0.5147 27 1 2.5369 -3.1405 0.5133 28 1 1.8440 -2.3859 -2.1185 29 1 1.3058 -4.0773 -3.6347 30 1 1.3825 -6.7496 -2.7232 31 1 -0.3126 -6.2064 -2.7276 32 1 -0.3745 -9.3354 -4.6690 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256123685.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:15 Heat of formation + Delta-G solvation = 31.058289 kcal Electronic energy + Delta-G solvation = -16149.931466 eV Core-core repulsion = 13339.828131 eV Total energy + Delta-G solvation = -2810.103335 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.28762 -39.13811 -34.80296 -34.20154 -33.95867 -32.30729 -30.25496 -27.59720 -27.11016 -25.58788 -22.48690 -21.57547 -20.25937 -20.07519 -18.19644 -17.23360 -16.17025 -15.99212 -15.39263 -15.22294 -14.58025 -14.44579 -13.97021 -13.61605 -13.29610 -13.02560 -12.95433 -12.84180 -12.53215 -11.95400 -11.70232 -10.91806 -10.89770 -10.29486 -10.14146 -9.82430 -9.51318 -9.34031 -8.84143 -8.69113 -8.63262 -7.76328 -6.14195 -4.20537 1.72513 2.53664 2.84748 3.25182 3.32078 3.35153 3.57869 3.92075 4.23731 4.34724 4.46436 4.59514 4.83528 5.06587 5.13685 5.18324 5.22100 5.33596 5.59090 5.76681 6.05256 6.55082 6.72243 6.90718 7.10664 7.51427 7.55754 7.58669 7.90035 7.92223 8.04656 8.77387 8.93092 9.32014 9.48423 10.96130 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.045963 B = 0.004172 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.040645 B = 6709.156328 C = 6855.565426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.452 5.452 3 C -0.055 4.055 4 C -0.030 4.030 5 N -0.473 5.473 6 C 0.191 3.809 7 C 0.230 3.770 8 N -0.754 5.754 9 C 0.696 3.304 10 O -0.599 6.599 11 N -0.727 5.727 12 C 0.266 3.734 13 C -0.541 4.541 14 H 0.063 0.937 15 C 0.063 3.937 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 H 0.079 0.921 22 H 0.087 0.913 23 H 0.093 0.907 24 H 0.175 0.825 25 H 0.171 0.829 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.393 0.607 29 H 0.387 0.613 30 H 0.026 0.974 31 H 0.025 0.975 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.178 19.873 6.651 20.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.135 5.135 3 C -0.189 4.189 4 C -0.179 4.179 5 N -0.192 5.192 6 C -0.071 4.071 7 C 0.103 3.897 8 N -0.413 5.413 9 C 0.395 3.605 10 O -0.478 6.478 11 N -0.379 5.379 12 C 0.145 3.855 13 C -0.580 4.580 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.208 1.208 21 H 0.098 0.902 22 H 0.106 0.894 23 H 0.111 0.889 24 H 0.192 0.808 25 H 0.188 0.812 26 H 0.096 0.904 27 H 0.113 0.887 28 H 0.226 0.774 29 H 0.219 0.781 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.375 18.390 7.518 19.915 hybrid contribution -0.594 1.083 -1.653 2.064 sum 0.781 19.473 5.865 20.352 Atomic orbital electron populations 1.22143 0.76286 1.05192 1.03953 1.45369 1.07825 1.06580 1.53688 1.22756 0.91422 0.92564 1.12108 1.22363 0.96499 0.91142 1.07873 1.70302 1.18419 1.12047 1.18472 1.23282 0.85878 0.90786 1.07166 1.19155 1.01472 0.84540 0.84500 1.45130 1.75483 1.13466 1.07208 1.16076 0.78697 0.81008 0.84686 1.90886 1.58344 1.54950 1.43657 1.45716 1.70946 1.17244 1.04018 1.19008 0.95368 0.75274 0.95840 1.21267 1.47325 0.98294 0.91073 0.91904 1.24944 0.94877 0.95658 0.98555 1.69993 1.44403 1.03412 1.34482 0.86357 0.77752 0.78286 0.84474 1.19688 1.20793 1.20837 0.90196 0.89419 0.88857 0.80758 0.81174 0.90433 0.88696 0.77371 0.78119 0.95606 0.95683 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.44 10.79 59.84 0.65 1.09 16 2 N -0.45 -4.49 3.15 -121.28 -0.38 -4.87 16 3 C -0.05 -0.50 11.58 -16.56 -0.19 -0.69 16 4 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 5 N -0.47 -6.74 11.25 -10.82 -0.12 -6.86 16 6 C 0.19 2.45 7.27 -155.41 -1.13 1.32 16 7 C 0.23 3.20 5.76 -5.19 -0.03 3.17 16 8 N -0.75 -11.69 5.55 -66.41 -0.37 -12.05 16 9 C 0.70 14.41 8.57 -86.92 -0.74 13.67 16 10 O -0.60 -14.89 16.34 5.28 0.09 -14.80 16 11 N -0.73 -15.69 5.55 -66.41 -0.37 -16.06 16 12 C 0.27 7.15 5.43 -5.19 -0.03 7.13 16 13 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 14 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 17 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.09 0.68 7.66 -51.93 -0.40 0.29 16 24 H 0.18 0.94 8.06 -52.49 -0.42 0.52 16 25 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 26 H 0.08 1.01 7.71 -51.93 -0.40 0.61 16 27 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.39 5.32 8.48 -40.82 -0.35 4.97 16 29 H 0.39 7.19 8.34 -40.82 -0.34 6.85 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 286.90 15.07 4.32 4.32 Total: -1.00 -34.76 286.90 -7.20 -41.96 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -3.98 Total: 6.23 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: -2.11 Total: 11.69 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: -0.51 Total: -65.32 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: 0.09 Total: -14.80 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -34.76 -7.20 -41.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256123685.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.017 kcal (2) G-P(sol) polarization free energy of solvation -34.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds