Wall clock time and date at job start Thu Apr 9 2020 12:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36878 * 126.39866 * 2 1 4 4 C 1.34668 * 106.81969 * 180.02562 * 3 2 1 5 5 N 1.34128 * 108.02037 * 359.77924 * 4 3 2 6 6 C 1.30505 * 109.25504 * 0.37178 * 5 4 3 7 7 C 1.50700 * 125.64889 * 179.89798 * 6 5 4 8 8 N 1.46498 * 109.46769 * 269.68506 * 7 6 5 9 9 C 1.34777 * 119.99828 * 179.72341 * 8 7 6 10 10 O 1.21593 * 119.99949 * 0.28071 * 9 8 7 11 11 N 1.34777 * 120.00128 * 180.27942 * 9 8 7 12 12 C 1.46499 * 120.00065 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47138 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00043 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00213 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99609 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00201 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47001 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47188 * 120.00103 * 17 15 13 20 20 H 1.48497 * 109.47104 * 240.00206 * 17 15 13 21 21 H 1.09006 * 109.47401 * 269.97267 * 1 2 3 22 22 H 1.08992 * 109.47260 * 29.97623 * 1 2 3 23 23 H 1.09006 * 109.47028 * 149.97921 * 1 2 3 24 24 H 1.07993 * 126.59276 * 0.05515 * 3 2 1 25 25 H 1.07997 * 125.99203 * 180.02562 * 4 3 2 26 26 H 1.09004 * 109.47210 * 149.68864 * 7 6 5 27 27 H 1.08994 * 109.47121 * 29.68833 * 7 6 5 28 28 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 29 29 H 0.97000 * 119.99549 * 359.97438 * 11 9 8 30 30 H 1.09000 * 109.47602 * 299.99940 * 12 11 9 31 31 H 1.09006 * 109.46868 * 59.99976 * 12 11 9 32 32 H 0.96997 * 119.99506 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1017 0.0000 4 6 3.5460 0.6505 -0.0006 5 7 3.5095 -0.6903 0.0040 6 6 2.2663 -1.0870 -0.0006 7 6 1.8018 -2.5207 0.0000 8 7 1.6500 -2.9854 -1.3810 9 6 1.2467 -4.2477 -1.6267 10 8 1.0040 -4.9992 -0.7022 11 7 1.1125 -4.6770 -2.8972 12 6 0.6736 -6.0489 -3.1644 13 6 0.6049 -6.2735 -4.6530 14 1 0.8628 -5.4744 -5.3321 15 6 0.2138 -7.4995 -5.1479 16 7 -0.0998 -8.4728 -4.3208 17 14 0.1293 -7.7781 -6.9930 18 1 0.5295 -6.5351 -7.7001 19 1 1.0506 -8.8800 -7.3700 20 1 -1.2589 -8.1408 -7.3758 21 1 -0.3634 -0.0005 1.0277 22 1 -0.3633 0.8901 -0.5134 23 1 -0.3633 -0.8899 -0.5142 24 1 1.9613 2.1344 0.0008 25 1 4.4368 1.2611 -0.0003 26 1 0.8436 -2.5919 0.5147 27 1 2.5369 -3.1405 0.5133 28 1 1.8440 -2.3859 -2.1185 29 1 1.3058 -4.0773 -3.6347 30 1 1.3825 -6.7496 -2.7232 31 1 -0.3126 -6.2064 -2.7276 32 1 -0.3745 -9.3354 -4.6690 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256123685.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:14 Heat of formation + Delta-G solvation = 4.213424 kcal Electronic energy + Delta-G solvation = -16151.095547 eV Core-core repulsion = 13339.828131 eV Total energy + Delta-G solvation = -2811.267415 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.11679 -40.83823 -36.42050 -35.77159 -34.95549 -34.33256 -31.38951 -29.24395 -28.00350 -26.83636 -24.49877 -22.35425 -21.92710 -21.08986 -19.83382 -18.33342 -17.80722 -17.35548 -16.72641 -16.64979 -16.21460 -15.51342 -15.37803 -14.92671 -14.56907 -14.30449 -14.04547 -13.85952 -13.69996 -13.55211 -13.34136 -12.85866 -12.73662 -12.20921 -11.43674 -11.35081 -11.01382 -10.80529 -10.61839 -10.36520 -9.63493 -9.46001 -8.27137 -6.43217 0.85571 1.44801 1.46231 1.59270 1.73329 1.88612 2.20597 2.27591 2.42957 3.08067 3.26761 3.53329 3.81781 3.96515 4.32677 4.38535 4.48517 4.59596 4.69807 4.78930 5.08694 5.28403 5.29343 5.34568 5.49557 5.65625 5.79790 5.86089 6.11316 6.20122 6.68372 7.07772 7.22790 7.27487 7.67306 8.85426 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.045963 B = 0.004172 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.040645 B = 6709.156328 C = 6855.565426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.447 5.447 3 C -0.030 4.030 4 C -0.058 4.058 5 N -0.512 5.512 6 C 0.167 3.833 7 C 0.234 3.766 8 N -0.729 5.729 9 C 0.697 3.303 10 O -0.643 6.643 11 N -0.721 5.721 12 C 0.284 3.716 13 C -0.554 4.554 14 H 0.083 0.917 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.986 3.014 18 H -0.254 1.254 19 H -0.280 1.280 20 H -0.278 1.278 21 H 0.094 0.906 22 H 0.116 0.884 23 H 0.083 0.917 24 H 0.218 0.782 25 H 0.189 0.811 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.407 0.593 29 H 0.404 0.596 30 H -0.014 1.014 31 H -0.010 1.010 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.863 22.580 5.229 23.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.129 5.129 3 C -0.164 4.164 4 C -0.206 4.206 5 N -0.232 5.232 6 C -0.095 4.095 7 C 0.108 3.892 8 N -0.387 5.387 9 C 0.397 3.603 10 O -0.526 6.526 11 N -0.375 5.375 12 C 0.161 3.839 13 C -0.592 4.592 14 H 0.101 0.899 15 C -0.195 4.195 16 N -0.569 5.569 17 Si 0.809 3.191 18 H -0.178 1.178 19 H -0.205 1.205 20 H -0.203 1.203 21 H 0.113 0.887 22 H 0.135 0.865 23 H 0.101 0.899 24 H 0.235 0.765 25 H 0.206 0.794 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.242 0.758 29 H 0.239 0.761 30 H 0.004 0.996 31 H 0.008 0.992 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.068 21.178 6.091 22.062 hybrid contribution -0.480 0.360 -1.108 1.260 sum 0.588 21.538 4.984 22.115 Atomic orbital electron populations 1.22409 0.74243 1.06161 1.05263 1.45555 1.09048 1.05971 1.52290 1.23416 0.90484 0.93829 1.08710 1.22837 0.98463 0.90254 1.09081 1.70205 1.19563 1.14148 1.19270 1.22755 0.86258 0.90611 1.09839 1.19082 1.01490 0.85596 0.82984 1.44868 1.73550 1.11538 1.08720 1.16158 0.78361 0.82108 0.83693 1.90855 1.60152 1.56703 1.44848 1.45305 1.71202 1.15792 1.05174 1.18454 0.92483 0.77151 0.95806 1.21626 1.47273 0.99141 0.91175 0.89943 1.26043 0.94034 0.95204 1.04220 1.70148 1.45324 1.04141 1.37269 0.85098 0.77807 0.78702 0.77505 1.17794 1.20546 1.20321 0.88745 0.86519 0.89864 0.76543 0.79378 0.89467 0.90583 0.75777 0.76090 0.99586 0.99168 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.62 10.79 127.77 1.38 2.00 16 2 N -0.45 -7.74 3.15 -537.62 -1.69 -9.44 16 3 C -0.03 -0.43 11.58 83.09 0.96 0.53 16 4 C -0.06 -1.17 11.87 83.52 0.99 -0.18 16 5 N -0.51 -14.22 11.25 -188.13 -2.12 -16.34 16 6 C 0.17 4.12 7.27 138.13 1.00 5.12 16 7 C 0.23 6.56 5.76 85.63 0.49 7.06 16 8 N -0.73 -22.44 5.55 -482.30 -2.68 -25.12 16 9 C 0.70 29.43 8.57 179.05 1.53 30.96 16 10 O -0.64 -33.19 16.34 -4.01 -0.07 -33.26 16 11 N -0.72 -31.52 5.55 -482.28 -2.68 -34.19 16 12 C 0.28 15.84 5.43 85.63 0.46 16.31 16 13 C -0.55 -30.37 9.28 25.60 0.24 -30.13 16 14 H 0.08 4.10 7.60 -2.91 -0.02 4.08 16 15 C 0.00 0.26 5.46 84.65 0.46 0.72 16 16 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 17 Si 0.99 42.44 29.54 68.60 2.03 44.46 16 18 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 19 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 21 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 22 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 23 H 0.08 1.06 7.66 -2.38 -0.02 1.04 16 24 H 0.22 1.18 8.06 -2.91 -0.02 1.16 16 25 H 0.19 2.81 8.06 -2.91 -0.02 2.78 16 26 H 0.09 2.26 7.71 -2.38 -0.02 2.25 16 27 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.41 10.55 8.48 -92.71 -0.79 9.76 16 29 H 0.40 14.71 8.34 -92.71 -0.77 13.93 16 30 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 31 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 32 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -77.75 286.90 0.19 -77.56 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -0.41 Total: 19.90 kcal Atomic # 6 Polarization: 24.86 SS G_CDS: 7.53 Total: 32.39 kcal Atomic # 7 Polarization: -132.17 SS G_CDS: -8.88 Total: -141.05 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.07 Total: -33.26 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -77.75 0.19 -77.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256123685.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.774 kcal (2) G-P(sol) polarization free energy of solvation -77.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds