Wall clock time and date at job start Thu Apr 9 2020 12:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08005 * 120.00291 * 114.36412 * 4 2 1 6 6 C 1.37881 * 120.00259 * 294.36743 * 4 2 1 7 7 N 1.31514 * 120.00212 * 156.61898 * 6 4 2 8 8 Si 1.86795 * 119.99775 * 336.88788 * 6 4 2 9 9 H 1.48501 * 109.47165 * 179.72704 * 8 6 4 10 10 H 1.48500 * 109.47318 * 299.72681 * 8 6 4 11 11 H 1.48500 * 109.47076 * 59.72783 * 8 6 4 12 12 N 1.46498 * 109.46908 * 240.00405 * 2 1 3 13 13 C 1.34776 * 119.99973 * 85.00105 * 12 2 1 14 14 O 1.21275 * 120.00093 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99964 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.47153 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47153 * 180.02562 * 16 15 13 18 18 C 1.35349 * 126.91178 * 274.68380 * 17 16 15 19 19 N 1.33779 * 106.49685 * 179.90164 * 18 17 16 20 20 N 1.28634 * 108.88122 * 0.36807 * 19 18 17 21 21 N 1.28713 * 110.18046 * 359.76578 * 20 19 18 22 22 H 0.97003 * 125.86404 * 180.02562 * 21 20 19 23 23 H 1.08994 * 109.47507 * 173.10064 * 1 2 3 24 24 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 25 25 H 1.09007 * 109.46955 * 53.09808 * 1 2 3 26 26 H 0.97003 * 119.99433 * 355.20223 * 7 6 4 27 27 H 0.96999 * 119.99673 * 264.99382 * 12 2 1 28 28 H 1.09007 * 109.46983 * 299.99861 * 15 13 12 29 29 H 1.08994 * 109.47412 * 59.99878 * 15 13 12 30 30 H 1.09001 * 109.46935 * 299.99228 * 16 15 13 31 31 H 1.08991 * 109.47484 * 60.00005 * 16 15 13 32 32 H 1.07998 * 126.75260 * 0.03563 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7976 -0.1756 2.4794 7 7 1.8026 -0.9539 3.5395 8 14 1.4651 1.6531 2.6649 9 1 1.2392 1.9724 4.0975 10 1 2.6331 2.4218 2.1647 11 1 0.2588 2.0190 1.8800 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8590 1.1587 -2.4114 15 6 2.6498 -0.7283 -3.5875 16 6 2.7018 0.2550 -4.7585 17 6 3.2040 -0.4553 -5.9891 18 6 4.4952 -0.6534 -6.3433 19 7 4.4731 -1.3261 -7.4994 20 7 3.2493 -1.5241 -7.8424 21 7 2.4548 -1.0184 -6.9651 22 1 1.4855 -1.0379 -6.9978 23 1 -0.3634 -1.0201 -0.1234 24 1 -0.3633 0.4033 0.9453 25 1 -0.3633 0.6171 -0.8218 26 1 1.9020 -1.9133 3.4363 27 1 2.2490 -1.6317 -1.1527 28 1 3.6492 -1.1201 -3.3980 29 1 1.9777 -1.5505 -3.8327 30 1 1.7026 0.6471 -4.9483 31 1 3.3742 1.0770 -4.5132 32 1 5.3711 -0.3334 -5.7985 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262012660.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:27 Heat of formation + Delta-G solvation = 13.171366 kcal Electronic energy + Delta-G solvation = -16259.811031 eV Core-core repulsion = 13448.932061 eV Total energy + Delta-G solvation = -2810.878970 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.29434 -40.63432 -36.91097 -35.37194 -34.44842 -34.14037 -31.89264 -30.45620 -26.92389 -26.02368 -23.98159 -22.99799 -22.16593 -21.14774 -19.73713 -19.20748 -17.87591 -17.16679 -16.83333 -16.49734 -15.60711 -15.30332 -15.18306 -14.77621 -14.55149 -14.29951 -14.04180 -13.37620 -13.30408 -13.20052 -12.74391 -12.42726 -12.28882 -12.00331 -11.79479 -11.73946 -11.59151 -11.20597 -10.80788 -10.44508 -10.14642 -9.86040 -8.79814 -6.41485 0.55035 1.48368 1.51376 1.52585 1.71664 1.80605 1.85838 2.44360 2.54437 2.96621 3.50555 3.71513 3.91803 4.04695 4.21628 4.32078 4.48083 4.53495 4.63872 4.75156 4.81331 5.02626 5.07335 5.12355 5.21234 5.46153 5.67660 5.70049 5.98253 6.03177 6.54595 6.88850 7.29046 7.42098 7.48015 8.57545 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.056132 B = 0.004397 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.707659 B = 6366.187304 C = 6466.897735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.244 3.756 3 H 0.024 0.976 4 C -0.623 4.623 5 H 0.041 0.959 6 C 0.001 3.999 7 N -0.921 5.921 8 Si 1.067 2.933 9 H -0.283 1.283 10 H -0.272 1.272 11 H -0.253 1.253 12 N -0.707 5.707 13 C 0.501 3.499 14 O -0.593 6.593 15 C -0.125 4.125 16 C -0.023 4.023 17 C 0.010 3.990 18 C -0.054 4.054 19 N -0.302 5.302 20 N -0.111 5.111 21 N -0.374 5.374 22 H 0.462 0.538 23 H 0.050 0.950 24 H 0.047 0.953 25 H 0.041 0.959 26 H 0.261 0.739 27 H 0.404 0.596 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.212 0.690 -16.971 16.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.139 3.861 3 H 0.042 0.958 4 C -0.660 4.660 5 H 0.059 0.941 6 C -0.201 4.201 7 N -0.555 5.555 8 Si 0.889 3.111 9 H -0.209 1.209 10 H -0.198 1.198 11 H -0.178 1.178 12 N -0.355 5.355 13 C 0.289 3.711 14 O -0.474 6.474 15 C -0.165 4.165 16 C -0.063 4.063 17 C -0.125 4.125 18 C -0.212 4.212 19 N -0.168 5.168 20 N -0.090 5.090 21 N -0.097 5.097 22 H 0.311 0.689 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.239 0.761 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -0.437 1.884 -17.238 17.347 hybrid contribution -0.182 -1.461 0.329 1.509 sum -0.619 0.422 -16.910 16.926 Atomic orbital electron populations 1.22296 0.97795 1.00558 1.00036 1.18685 0.91272 0.93132 0.83042 0.95823 1.22197 1.40969 1.10351 0.92508 0.94052 1.26749 0.92676 1.08762 0.91877 1.70969 1.45654 1.06043 1.32859 0.83735 0.78821 0.71946 0.76567 1.20887 1.19751 1.17755 1.46180 1.65361 1.14349 1.09620 1.21273 0.77239 0.87138 0.85465 1.90646 1.53016 1.17846 1.85933 1.21634 1.05020 0.99299 0.90541 1.19792 1.03895 0.96367 0.86252 1.22336 0.91786 1.03169 0.95165 1.23936 0.98268 1.03338 0.95647 1.75076 1.11653 1.16043 1.14050 1.78228 0.95991 1.19256 1.15557 1.45169 1.12421 1.37149 1.14983 0.68909 0.93086 0.93359 0.94044 0.93033 0.76113 0.86640 0.86931 0.89034 0.87903 0.77094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.19 9.20 71.98 0.66 -5.53 16 2 C 0.24 10.93 2.16 44.24 0.10 11.02 16 3 H 0.02 1.16 6.15 -2.38 -0.01 1.15 16 4 C -0.62 -32.58 8.95 25.60 0.23 -32.35 16 5 H 0.04 2.29 7.96 -2.91 -0.02 2.26 16 6 C 0.00 0.08 5.19 84.66 0.44 0.52 16 7 N -0.92 -54.22 13.70 21.45 0.29 -53.92 16 8 Si 1.07 48.64 26.44 68.60 1.81 50.46 16 9 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.25 -10.60 6.14 99.48 0.61 -9.99 16 12 N -0.71 -24.97 5.07 -446.11 -2.26 -27.24 16 13 C 0.50 15.36 7.79 87.66 0.68 16.04 16 14 O -0.59 -22.58 15.64 -3.02 -0.05 -22.63 16 15 C -0.12 -2.24 5.68 29.85 0.17 -2.07 16 16 C -0.02 -0.37 5.07 29.85 0.15 -0.22 16 17 C 0.01 0.17 6.56 41.36 0.27 0.44 16 18 C -0.05 -1.02 11.99 83.73 1.00 -0.01 16 19 N -0.30 -7.45 12.41 -58.25 -0.72 -8.18 16 20 N -0.11 -2.50 13.38 37.02 0.50 -2.01 16 21 N -0.37 -5.76 6.98 -47.79 -0.33 -6.10 16 22 H 0.46 3.73 8.96 -219.96 -1.97 1.76 16 23 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.05 2.10 5.47 -2.39 -0.01 2.08 16 25 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 26 H 0.26 15.32 8.73 -92.71 -0.81 14.51 16 27 H 0.40 12.52 8.53 -92.71 -0.79 11.73 16 28 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.09 1.41 8.10 -2.39 -0.02 1.39 16 31 H 0.10 1.76 8.10 -2.39 -0.02 1.74 16 32 H 0.21 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -70.13 279.20 1.21 -68.92 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -1.74 Total: 12.84 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 3.71 Total: -12.15 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -2.53 Total: -97.44 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.05 Total: -22.63 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 1.81 Total: 50.46 kcal Total: -70.13 1.21 -68.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262012660.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.096 kcal (2) G-P(sol) polarization free energy of solvation -70.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds