Wall clock time and date at job start Thu Apr 9 2020 12:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46946 * 2 1 4 4 C 1.53000 * 109.47491 * 120.00476 * 2 1 3 5 5 N 1.46493 * 109.47245 * 175.00186 * 4 2 1 6 6 C 1.34778 * 119.99793 * 179.97438 * 5 4 2 7 7 O 1.21695 * 120.00192 * 359.97438 * 6 5 4 8 8 C 1.46661 * 119.99796 * 179.97438 * 6 5 4 9 9 C 1.36547 * 125.98711 * 179.97438 * 8 6 5 10 10 C 1.40360 * 106.70833 * 180.02562 * 9 8 6 11 11 C 1.35131 * 107.11647 * 359.97438 * 10 9 8 12 12 O 1.33934 * 108.76477 * 0.02562 * 11 10 9 13 13 N 1.46499 * 109.47115 * 240.00100 * 2 1 3 14 14 C 1.36939 * 120.00075 * 84.99610 * 13 2 1 15 15 H 1.07998 * 120.00179 * 0.02562 * 14 13 2 16 16 C 1.38807 * 120.00149 * 179.97438 * 14 13 2 17 17 N 1.31621 * 120.00158 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00221 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.46788 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47154 * 119.99746 * 18 16 14 21 21 H 1.48500 * 109.47491 * 240.00444 * 18 16 14 22 22 H 1.08991 * 109.47308 * 60.00028 * 1 2 3 23 23 H 1.09008 * 109.46836 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46747 * 299.99612 * 1 2 3 25 25 H 1.08997 * 109.47315 * 54.99301 * 4 2 1 26 26 H 1.09001 * 109.46782 * 294.99927 * 4 2 1 27 27 H 0.96998 * 120.00266 * 359.97438 * 5 4 2 28 28 H 1.08005 * 126.64485 * 0.02562 * 9 8 6 29 29 H 1.08003 * 126.44294 * 180.02562 * 10 9 8 30 30 H 1.07997 * 125.61851 * 180.26772 * 11 10 9 31 31 H 0.97000 * 120.00629 * 265.00313 * 13 2 1 32 32 H 0.96999 * 120.00070 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1904 6 6 4.1731 -1.4283 2.1910 7 8 3.5681 -1.8842 3.1434 8 6 5.6347 -1.5340 2.1320 9 6 6.4358 -2.1152 3.0727 10 6 7.7556 -1.9906 2.6115 11 6 7.7030 -1.3475 1.4242 12 8 6.4233 -1.0738 1.1388 13 7 2.0183 -0.6906 -1.1962 14 6 2.1490 -0.0075 -2.3758 15 1 1.8925 1.0405 -2.4242 16 6 2.6122 -0.6616 -3.5090 17 7 2.9253 -1.9387 -3.4500 18 14 2.7912 0.2704 -5.1180 19 1 2.3772 1.6828 -4.9205 20 1 4.2084 0.2277 -5.5598 21 1 1.9309 -0.3580 -6.1525 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6054 -1.7198 1.2951 26 1 1.7517 -0.1584 2.1369 27 1 3.9824 -0.4627 0.4315 28 1 6.1158 -2.5807 3.9933 29 1 8.6458 -2.3433 3.1112 30 1 8.5524 -1.0988 0.8054 31 1 2.2490 -1.6318 -1.1527 32 1 3.2494 -2.3957 -4.2418 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317224838.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:49 Heat of formation + Delta-G solvation = -13.809540 kcal Electronic energy + Delta-G solvation = -16584.537201 eV Core-core repulsion = 13740.195500 eV Total energy + Delta-G solvation = -2844.341701 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.57238 -39.16053 -36.35447 -33.70749 -32.93712 -31.90152 -29.92030 -28.69155 -26.03039 -23.76632 -22.65112 -21.65763 -20.23813 -19.95276 -18.29499 -17.28802 -16.22692 -16.13585 -15.70954 -15.10943 -14.43022 -14.04849 -13.71850 -13.21159 -12.98412 -12.92043 -12.63634 -12.27384 -12.11173 -12.00329 -11.39677 -10.90330 -10.77648 -10.36959 -10.07915 -10.02143 -9.96663 -9.73830 -9.00923 -8.87308 -8.51356 -7.05738 -5.82375 -3.12980 1.19251 2.39971 2.83009 3.39008 3.40267 3.45285 3.47320 3.56143 4.53459 4.80605 4.92876 5.10470 5.41640 5.46254 5.55443 5.67091 5.78142 5.91182 5.93252 6.05925 6.16129 6.27665 6.34551 6.53811 6.67997 6.76131 6.91274 7.02754 7.65377 7.84163 8.34414 8.38141 9.46715 10.01175 10.36656 11.39565 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.021610 B = 0.006924 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.373201 B = 4042.685180 C = 5084.523419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.055 0.945 4 C 0.113 3.887 5 N -0.698 5.698 6 C 0.596 3.404 7 O -0.536 6.536 8 C -0.068 4.068 9 C -0.131 4.131 10 C -0.230 4.230 11 C -0.009 4.009 12 O -0.156 6.156 13 N -0.724 5.724 14 C -0.243 4.243 15 H 0.072 0.928 16 C -0.010 4.010 17 N -0.929 5.929 18 Si 0.906 3.094 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.292 1.292 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.040 0.960 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.416 0.584 28 H 0.158 0.842 29 H 0.154 0.846 30 H 0.208 0.792 31 H 0.385 0.615 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.856 2.236 10.482 12.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.048 3.952 3 H 0.072 0.928 4 C -0.011 4.011 5 N -0.349 5.349 6 C 0.382 3.618 7 O -0.416 6.416 8 C -0.120 4.120 9 C -0.152 4.152 10 C -0.249 4.249 11 C -0.079 4.079 12 O -0.050 6.050 13 N -0.367 5.367 14 C -0.374 4.374 15 H 0.090 0.910 16 C -0.207 4.207 17 N -0.577 5.577 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.253 0.747 28 H 0.175 0.825 29 H 0.172 0.828 30 H 0.225 0.775 31 H 0.219 0.781 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.273 2.213 10.721 12.617 hybrid contribution 0.606 0.126 -1.263 1.407 sum 6.878 2.339 9.458 11.926 Atomic orbital electron populations 1.22356 0.98121 1.01343 1.00437 1.20522 0.92809 0.95787 0.86041 0.92753 1.21798 0.78720 1.01525 0.99061 1.45934 1.08674 1.57400 1.22855 1.16589 0.83126 0.78884 0.83221 1.90837 1.67199 1.49658 1.33928 1.22241 0.92009 1.07115 0.90673 1.21913 0.92033 1.00860 1.00365 1.21808 0.98245 1.06864 0.97961 1.24410 0.84699 1.00694 0.98083 1.84153 1.17085 1.62117 1.41665 1.42487 1.78072 1.10845 1.05264 1.19262 1.36923 0.93920 0.87282 0.91020 1.24752 1.01958 0.95922 0.98055 1.69678 1.50511 1.08646 1.28854 0.86140 0.77285 0.78803 0.84053 1.20555 1.21893 1.21881 0.92255 0.93143 0.94122 0.91391 0.91386 0.74671 0.82450 0.82838 0.77539 0.78066 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.49 37.16 0.35 -2.43 16 2 C 0.16 2.99 3.05 -67.93 -0.21 2.78 16 3 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 4 C 0.11 1.95 5.23 -4.05 -0.02 1.93 16 5 N -0.70 -12.43 5.38 -61.63 -0.33 -12.76 16 6 C 0.60 10.75 7.79 -12.86 -0.10 10.65 16 7 O -0.54 -10.69 16.86 5.19 0.09 -10.60 16 8 C -0.07 -1.10 7.13 -36.79 -0.26 -1.36 16 9 C -0.13 -1.81 10.62 -39.39 -0.42 -2.23 16 10 C -0.23 -2.58 10.87 -39.89 -0.43 -3.01 16 11 C -0.01 -0.10 12.08 29.63 0.36 0.26 16 12 O -0.16 -2.38 10.40 5.00 0.05 -2.33 16 13 N -0.72 -17.15 4.56 -53.43 -0.24 -17.39 16 14 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 15 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 16 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 17 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 18 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 22 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 23 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.42 7.70 7.89 -40.82 -0.32 7.38 16 28 H 0.16 1.98 8.06 -52.48 -0.42 1.56 16 29 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 30 H 0.21 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.39 9.94 7.80 -40.82 -0.32 9.62 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 287.62 15.07 4.33 4.33 Total: -1.00 -30.92 287.62 -5.37 -36.29 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -3.99 Total: 12.64 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -0.98 Total: -0.36 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.15 Total: -56.75 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.14 Total: -12.93 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.92 -5.37 -36.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317224838.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.481 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds