Wall clock time and date at job start Thu Apr 9 2020 12:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46946 * 2 1 4 4 C 1.53000 * 109.47491 * 120.00476 * 2 1 3 5 5 N 1.46493 * 109.47245 * 175.00186 * 4 2 1 6 6 C 1.34778 * 119.99793 * 179.97438 * 5 4 2 7 7 O 1.21695 * 120.00192 * 359.97438 * 6 5 4 8 8 C 1.46661 * 119.99796 * 179.97438 * 6 5 4 9 9 C 1.36547 * 125.98711 * 179.97438 * 8 6 5 10 10 C 1.40360 * 106.70833 * 180.02562 * 9 8 6 11 11 C 1.35131 * 107.11647 * 359.97438 * 10 9 8 12 12 O 1.33934 * 108.76477 * 0.02562 * 11 10 9 13 13 N 1.46499 * 109.47115 * 240.00100 * 2 1 3 14 14 C 1.36939 * 120.00075 * 84.99610 * 13 2 1 15 15 H 1.07998 * 120.00179 * 0.02562 * 14 13 2 16 16 C 1.38807 * 120.00149 * 179.97438 * 14 13 2 17 17 N 1.31621 * 120.00158 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00221 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.46788 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47154 * 119.99746 * 18 16 14 21 21 H 1.48500 * 109.47491 * 240.00444 * 18 16 14 22 22 H 1.08991 * 109.47308 * 60.00028 * 1 2 3 23 23 H 1.09008 * 109.46836 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46747 * 299.99612 * 1 2 3 25 25 H 1.08997 * 109.47315 * 54.99301 * 4 2 1 26 26 H 1.09001 * 109.46782 * 294.99927 * 4 2 1 27 27 H 0.96998 * 120.00266 * 359.97438 * 5 4 2 28 28 H 1.08005 * 126.64485 * 0.02562 * 9 8 6 29 29 H 1.08003 * 126.44294 * 180.02562 * 10 9 8 30 30 H 1.07997 * 125.61851 * 180.26772 * 11 10 9 31 31 H 0.97000 * 120.00629 * 265.00313 * 13 2 1 32 32 H 0.96999 * 120.00070 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1904 6 6 4.1731 -1.4283 2.1910 7 8 3.5681 -1.8842 3.1434 8 6 5.6347 -1.5340 2.1320 9 6 6.4358 -2.1152 3.0727 10 6 7.7556 -1.9906 2.6115 11 6 7.7030 -1.3475 1.4242 12 8 6.4233 -1.0738 1.1388 13 7 2.0183 -0.6906 -1.1962 14 6 2.1490 -0.0075 -2.3758 15 1 1.8925 1.0405 -2.4242 16 6 2.6122 -0.6616 -3.5090 17 7 2.9253 -1.9387 -3.4500 18 14 2.7912 0.2704 -5.1180 19 1 2.3772 1.6828 -4.9205 20 1 4.2084 0.2277 -5.5598 21 1 1.9309 -0.3580 -6.1525 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6054 -1.7198 1.2951 26 1 1.7517 -0.1584 2.1369 27 1 3.9824 -0.4627 0.4315 28 1 6.1158 -2.5807 3.9933 29 1 8.6458 -2.3433 3.1112 30 1 8.5524 -1.0988 0.8054 31 1 2.2490 -1.6318 -1.1527 32 1 3.2494 -2.3957 -4.2418 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317224838.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:48 Heat of formation + Delta-G solvation = -35.926183 kcal Electronic energy + Delta-G solvation = -16585.496251 eV Core-core repulsion = 13740.195500 eV Total energy + Delta-G solvation = -2845.300750 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.61807 -40.56159 -37.96002 -35.32209 -34.06190 -33.63389 -31.14361 -30.40229 -27.38282 -25.71468 -23.88471 -22.66687 -21.76339 -21.19526 -19.65144 -19.11680 -17.39112 -17.28762 -17.14721 -16.74168 -16.03634 -15.55375 -15.34693 -14.83527 -14.18318 -13.95107 -13.84836 -13.69331 -13.51712 -13.44693 -13.08134 -12.81621 -12.50674 -12.13762 -11.74060 -11.67087 -11.43320 -11.02571 -10.98647 -10.23862 -9.61731 -9.03436 -7.91926 -5.21404 0.05231 1.44807 1.49116 1.50098 1.59332 1.75280 2.11315 2.29600 2.57531 3.42417 3.74639 3.87916 3.95599 3.98659 4.12656 4.37365 4.61125 4.64174 4.71756 4.81679 4.91666 4.96803 5.06687 5.24024 5.29647 5.43274 5.55563 5.56511 5.89348 6.28574 6.44982 6.98550 7.35693 8.07620 8.31963 9.31092 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.021610 B = 0.006924 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.373201 B = 4042.685180 C = 5084.523419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.158 3.842 3 H 0.060 0.940 4 C 0.120 3.880 5 N -0.701 5.701 6 C 0.595 3.405 7 O -0.565 6.565 8 C -0.113 4.113 9 C -0.123 4.123 10 C -0.228 4.228 11 C 0.001 3.999 12 O -0.179 6.179 13 N -0.733 5.733 14 C -0.234 4.234 15 H 0.079 0.921 16 C -0.073 4.073 17 N -0.968 5.968 18 Si 0.968 3.032 19 H -0.266 1.266 20 H -0.296 1.296 21 H -0.299 1.299 22 H 0.045 0.955 23 H 0.043 0.957 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.089 0.911 27 H 0.412 0.588 28 H 0.165 0.835 29 H 0.190 0.810 30 H 0.250 0.750 31 H 0.372 0.628 32 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.936 3.271 11.050 13.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.049 3.951 3 H 0.078 0.922 4 C -0.004 4.004 5 N -0.350 5.350 6 C 0.382 3.618 7 O -0.447 6.447 8 C -0.164 4.164 9 C -0.144 4.144 10 C -0.247 4.247 11 C -0.068 4.068 12 O -0.074 6.074 13 N -0.374 5.374 14 C -0.366 4.366 15 H 0.097 0.903 16 C -0.265 4.265 17 N -0.618 5.618 18 Si 0.799 3.201 19 H -0.190 1.190 20 H -0.223 1.223 21 H -0.226 1.226 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.107 0.893 27 H 0.248 0.752 28 H 0.182 0.818 29 H 0.207 0.793 30 H 0.266 0.734 31 H 0.204 0.796 32 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.327 3.294 11.323 13.883 hybrid contribution 0.345 -0.173 -1.344 1.399 sum 7.672 3.120 9.979 12.968 Atomic orbital electron populations 1.22221 0.96330 1.01305 1.01535 1.20713 0.93898 0.95613 0.84852 0.92197 1.21732 0.78614 1.01047 0.98965 1.45942 1.08787 1.57541 1.22739 1.16846 0.84191 0.78116 0.82633 1.90799 1.68209 1.50911 1.34791 1.21987 0.91428 1.10564 0.92469 1.22257 0.93140 0.99128 0.99862 1.22221 0.98180 1.06410 0.97861 1.25405 0.84163 0.98744 0.98497 1.84130 1.18591 1.62787 1.41899 1.42627 1.78372 1.10290 1.06129 1.19623 1.34682 0.94214 0.88057 0.90294 1.25487 1.03045 0.96735 1.01228 1.69833 1.52589 1.10216 1.29206 0.85144 0.76598 0.78264 0.80143 1.18983 1.22290 1.22625 0.93559 0.93780 0.90551 0.92423 0.89256 0.75196 0.81756 0.79269 0.73416 0.79628 0.94242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 9.49 71.98 0.68 -4.37 16 2 C 0.16 5.82 3.05 44.99 0.14 5.96 16 3 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 4 C 0.12 4.11 5.23 86.38 0.45 4.56 16 5 N -0.70 -25.25 5.38 -467.11 -2.51 -27.76 16 6 C 0.59 21.78 7.79 86.44 0.67 22.45 16 7 O -0.56 -22.83 16.86 -4.33 -0.07 -22.90 16 8 C -0.11 -3.63 7.13 24.08 0.17 -3.46 16 9 C -0.12 -3.25 10.62 22.39 0.24 -3.01 16 10 C -0.23 -4.45 10.87 22.07 0.24 -4.21 16 11 C 0.00 0.03 12.08 67.10 0.81 0.84 16 12 O -0.18 -5.34 10.40 -5.01 -0.05 -5.39 16 13 N -0.73 -34.86 4.56 -322.95 -1.47 -36.33 16 14 C -0.23 -12.30 9.93 84.03 0.83 -11.47 16 15 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 16 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 17 N -0.97 -57.96 13.06 21.65 0.28 -57.68 16 18 Si 0.97 44.97 29.55 68.60 2.03 47.00 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 21 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 22 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 24 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.41 15.55 7.89 -92.71 -0.73 14.81 16 28 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 29 H 0.19 2.24 8.06 -2.91 -0.02 2.21 16 30 H 0.25 2.56 8.06 -2.91 -0.02 2.54 16 31 H 0.37 19.60 7.80 -92.71 -0.72 18.88 16 32 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -67.16 287.62 2.59 -64.57 By element: Atomic # 1 Polarization: 35.09 SS G_CDS: -0.31 Total: 34.78 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 4.71 Total: 3.72 kcal Atomic # 7 Polarization: -118.07 SS G_CDS: -3.70 Total: -121.78 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.13 Total: -28.29 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -67.16 2.59 -64.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317224838.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.643 kcal (2) G-P(sol) polarization free energy of solvation -67.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds