Wall clock time and date at job start Thu Apr 9 2020 12:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47529 * 2 1 4 4 C 1.53005 * 109.46524 * 119.99911 * 2 1 3 5 5 N 1.46505 * 109.46534 * 174.99854 * 4 2 1 6 6 C 1.34777 * 119.99718 * 180.02562 * 5 4 2 7 7 O 1.21579 * 120.00077 * 359.97438 * 6 5 4 8 8 C 1.47706 * 120.00293 * 179.97438 * 6 5 4 9 9 C 1.41500 * 126.52096 * 179.97438 * 8 6 5 10 10 C 1.35365 * 105.50387 * 180.02562 * 9 8 6 11 11 N 1.35033 * 107.23063 * 359.97438 * 10 9 8 12 12 H 0.97001 * 124.89001 * 180.02562 * 11 10 9 13 13 N 1.28474 * 110.22757 * 0.02562 * 11 10 9 14 14 N 1.46498 * 109.47077 * 239.99434 * 2 1 3 15 15 C 1.36940 * 119.99972 * 85.00469 * 14 2 1 16 16 H 1.07997 * 119.99484 * 359.97438 * 15 14 2 17 17 C 1.38802 * 120.00230 * 180.02562 * 15 14 2 18 18 N 1.31619 * 120.00257 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00185 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47138 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47587 * 120.00029 * 19 17 15 22 22 H 1.48504 * 109.47093 * 240.00182 * 19 17 15 23 23 H 1.08998 * 109.46801 * 59.99760 * 1 2 3 24 24 H 1.08997 * 109.47529 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47056 * 300.00843 * 1 2 3 26 26 H 1.09000 * 109.47384 * 54.99938 * 4 2 1 27 27 H 1.08998 * 109.47196 * 294.99095 * 4 2 1 28 28 H 0.96995 * 120.00601 * 359.97438 * 5 4 2 29 29 H 1.08000 * 127.24928 * 0.02691 * 9 8 6 30 30 H 1.08004 * 126.38789 * 180.02562 * 10 9 8 31 31 H 0.96999 * 119.99984 * 265.00592 * 14 2 1 32 32 H 0.97000 * 120.00315 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0398 -0.7213 1.2493 5 7 3.4999 -0.8264 1.1906 6 6 4.1728 -1.4293 2.1908 7 8 3.5682 -1.8853 3.1419 8 6 5.6448 -1.5359 2.1315 9 6 6.4853 -2.1361 3.0987 10 6 7.7441 -1.9965 2.6209 11 7 7.6537 -1.3511 1.4382 12 1 8.4077 -1.1182 0.8742 13 7 6.4253 -1.0898 1.1675 14 7 2.0183 -0.6907 -1.1961 15 6 2.1492 -0.0077 -2.3757 16 1 1.8920 1.0401 -2.4243 17 6 2.6113 -0.6622 -3.5092 18 7 2.9243 -1.9392 -3.4501 19 14 2.7905 0.2698 -5.1181 20 1 2.3766 1.6822 -4.9208 21 1 4.2074 0.2258 -5.5606 22 1 1.9293 -0.3580 -6.1523 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5140 0.8899 26 1 1.6052 -1.7198 1.2953 27 1 1.7516 -0.1583 2.1370 28 1 3.9823 -0.4629 0.4317 29 1 6.1856 -2.6066 4.0235 30 1 8.6516 -2.3384 3.0964 31 1 2.2489 -1.6319 -1.1525 32 1 3.2476 -2.3966 -4.2420 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317226129.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:52 Heat of formation + Delta-G solvation = 20.024266 kcal Electronic energy + Delta-G solvation = -16543.664666 eV Core-core repulsion = 13733.082861 eV Total energy + Delta-G solvation = -2810.581806 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.53084 -40.42533 -37.88625 -35.20393 -33.72266 -32.71018 -31.62045 -30.52639 -27.57094 -25.75169 -24.38445 -22.55870 -21.71069 -20.88686 -19.50304 -19.25220 -17.95029 -17.09195 -16.89130 -16.58050 -15.92382 -15.46311 -15.25134 -14.75583 -14.58686 -14.08670 -13.80055 -13.64233 -13.40088 -13.06604 -12.81241 -12.49065 -12.13268 -11.90252 -11.70736 -11.64506 -11.26037 -10.96764 -10.48423 -10.12792 -9.97908 -9.01453 -7.90473 -5.19653 0.56677 1.28028 1.48857 1.49559 1.59120 1.99380 2.37652 2.43853 2.58358 3.43415 3.51888 3.89277 3.97860 4.10497 4.29233 4.40755 4.64399 4.74156 4.78527 4.80450 4.88859 5.08275 5.26815 5.36731 5.41477 5.56841 5.60234 6.21192 6.29859 6.51815 6.92618 7.18604 7.36816 8.09451 8.33969 9.32658 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.021556 B = 0.006870 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.633830 B = 4074.429032 C = 5120.304268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.158 3.842 3 H 0.058 0.942 4 C 0.121 3.879 5 N -0.700 5.700 6 C 0.593 3.407 7 O -0.576 6.576 8 C -0.045 4.045 9 C -0.207 4.207 10 C 0.015 3.985 11 N -0.369 5.369 12 H 0.463 0.537 13 N -0.282 5.282 14 N -0.732 5.732 15 C -0.232 4.232 16 H 0.079 0.921 17 C -0.074 4.074 18 N -0.968 5.968 19 Si 0.969 3.031 20 H -0.265 1.265 21 H -0.296 1.296 22 H -0.298 1.298 23 H 0.045 0.955 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.412 0.588 29 H 0.168 0.832 30 H 0.239 0.761 31 H 0.372 0.628 32 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.738 2.615 11.971 15.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.049 3.951 3 H 0.076 0.924 4 C -0.003 4.003 5 N -0.350 5.350 6 C 0.379 3.621 7 O -0.455 6.455 8 C -0.205 4.205 9 C -0.235 4.235 10 C -0.130 4.130 11 N -0.085 5.085 12 H 0.311 0.689 13 N -0.120 5.120 14 N -0.373 5.373 15 C -0.364 4.364 16 H 0.097 0.903 17 C -0.266 4.266 18 N -0.619 5.619 19 Si 0.799 3.201 20 H -0.190 1.190 21 H -0.224 1.224 22 H -0.226 1.226 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.094 0.906 26 H 0.074 0.926 27 H 0.105 0.895 28 H 0.248 0.752 29 H 0.186 0.814 30 H 0.255 0.745 31 H 0.203 0.797 32 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.204 3.026 11.514 15.048 hybrid contribution 0.593 -0.352 -1.044 1.251 sum 9.797 2.674 10.470 14.586 Atomic orbital electron populations 1.22217 0.96319 1.01291 1.01500 1.20707 0.93884 0.95536 0.84931 0.92383 1.21696 0.79050 1.00827 0.98776 1.45906 1.08401 1.57739 1.22980 1.17290 0.85238 0.77458 0.82104 1.90710 1.69436 1.50504 1.34867 1.21977 0.93970 1.08090 0.96446 1.22072 0.91873 1.07110 1.02469 1.23645 1.01052 1.00041 0.88227 1.43542 1.06014 1.41121 1.17860 0.68948 1.73613 0.92058 1.21539 1.24824 1.42612 1.78333 1.10260 1.06107 1.19625 1.34571 0.94186 0.88042 0.90342 1.25486 1.03120 0.96744 1.01235 1.69842 1.52708 1.10223 1.29107 0.85134 0.76547 0.78268 0.80149 1.18977 1.22373 1.22572 0.93567 0.93771 0.90566 0.92642 0.89511 0.75216 0.81446 0.74496 0.79664 0.94319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.20 9.49 71.98 0.68 -4.52 16 2 C 0.16 6.06 3.05 44.99 0.14 6.20 16 3 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 4 C 0.12 4.33 5.23 86.38 0.45 4.79 16 5 N -0.70 -26.70 5.39 -466.08 -2.51 -29.21 16 6 C 0.59 22.84 7.82 86.75 0.68 23.52 16 7 O -0.58 -24.29 16.93 -3.97 -0.07 -24.35 16 8 C -0.05 -1.50 7.13 42.46 0.30 -1.20 16 9 C -0.21 -5.17 10.81 22.41 0.24 -4.93 16 10 C 0.02 0.24 12.02 83.54 1.00 1.24 16 11 N -0.37 -7.19 6.83 -57.51 -0.39 -7.59 16 12 H 0.46 5.21 8.96 -219.99 -1.97 3.24 16 13 N -0.28 -8.69 11.92 -48.18 -0.57 -9.26 16 14 N -0.73 -35.86 4.56 -322.95 -1.47 -37.33 16 15 C -0.23 -12.50 9.93 84.03 0.83 -11.66 16 16 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 17 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 18 N -0.97 -58.99 13.06 21.65 0.28 -58.71 16 19 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 22 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 23 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 26 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.41 16.64 7.86 -92.71 -0.73 15.91 16 29 H 0.17 3.80 8.06 -2.91 -0.02 3.77 16 30 H 0.24 0.98 8.06 -2.91 -0.02 0.96 16 31 H 0.37 20.17 7.80 -92.71 -0.72 19.44 16 32 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -73.13 286.21 -0.17 -73.30 By element: Atomic # 1 Polarization: 37.90 SS G_CDS: -2.26 Total: 35.64 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 4.80 Total: 9.74 kcal Atomic # 7 Polarization: -137.43 SS G_CDS: -4.67 Total: -142.10 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.07 Total: -24.35 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -73.13 -0.17 -73.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317226129.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.319 kcal (2) G-P(sol) polarization free energy of solvation -73.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds