Wall clock time and date at job start Thu Apr 9 2020 12:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46811 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47092 * 180.02562 * 16 15 13 18 18 N 1.33244 * 125.52117 * 269.69099 * 17 16 15 19 19 C 1.30842 * 109.82497 * 179.85411 * 18 17 16 20 20 N 1.34430 * 108.07613 * 0.40240 * 19 18 17 21 21 H 0.97003 * 126.82216 * 179.78492 * 20 19 18 22 22 N 1.30711 * 125.53092 * 89.99714 * 17 16 15 23 23 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 28 28 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 29 29 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 30 30 H 1.09005 * 109.46886 * 299.99809 * 16 15 13 31 31 H 1.09003 * 109.47641 * 59.99741 * 16 15 13 32 32 H 1.07998 * 125.95670 * 180.12537 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 6 2.7010 0.2548 -4.7588 17 6 3.2021 -0.4557 -5.9896 18 7 4.4780 -0.5550 -6.3606 19 6 4.5648 -1.2384 -7.4730 20 7 3.3215 -1.5880 -7.8458 21 1 3.0721 -2.0974 -8.6328 22 7 2.4553 -1.0697 -6.8693 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7089 1.1611 3.4845 27 1 2.2490 -1.6317 -1.1527 28 1 3.6480 -1.1211 -3.3986 29 1 1.9760 -1.5503 -3.8327 30 1 1.7019 0.6477 -4.9480 31 1 3.3741 1.0764 -4.5137 32 1 5.4760 -1.4758 -8.0019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318966325.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:07 Heat of formation + Delta-G solvation = 34.642999 kcal Electronic energy + Delta-G solvation = -16141.157872 eV Core-core repulsion = 13331.209982 eV Total energy + Delta-G solvation = -2809.947890 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.23662 -38.85163 -34.93671 -34.00610 -32.34105 -32.05588 -30.65815 -28.77332 -25.27953 -24.97580 -22.88717 -21.08612 -20.07267 -19.29599 -18.49403 -17.09339 -15.80164 -15.59901 -15.45846 -15.09346 -14.69527 -14.12566 -13.48474 -12.86528 -12.59628 -12.36753 -12.27469 -11.95200 -11.60361 -11.07287 -10.99820 -10.86298 -10.65355 -10.28524 -10.25110 -10.19474 -10.16534 -9.83261 -9.00075 -8.93295 -8.51000 -7.84249 -6.08349 -4.17369 1.43749 2.48728 2.74679 3.27115 3.33850 3.36297 3.48082 3.90392 4.24726 4.43107 4.62781 4.84105 5.19973 5.23768 5.39126 5.58955 5.89101 6.03766 6.10210 6.15316 6.38574 6.82507 6.87941 7.02372 7.20664 7.52671 7.61691 7.74397 7.93870 7.96919 8.19955 8.73241 8.82896 9.19723 9.50269 10.97665 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.053961 B = 0.004178 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.767786 B = 6699.656453 C = 6949.184684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.710 5.710 13 C 0.504 3.496 14 O -0.556 6.556 15 C -0.133 4.133 16 C -0.011 4.011 17 C 0.237 3.763 18 N -0.539 5.539 19 C 0.257 3.743 20 N -0.490 5.490 21 H 0.440 0.560 22 N -0.315 5.315 23 H 0.015 0.985 24 H 0.025 0.975 25 H 0.089 0.911 26 H 0.264 0.736 27 H 0.389 0.611 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.541 -6.894 -17.993 20.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.357 5.357 13 C 0.288 3.712 14 O -0.436 6.436 15 C -0.175 4.175 16 C -0.051 4.051 17 C -0.045 4.045 18 N -0.267 5.267 19 C -0.042 4.042 20 N -0.208 5.208 21 H 0.285 0.715 22 N -0.144 5.144 23 H 0.034 0.966 24 H 0.045 0.955 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.221 0.779 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 4.750 -5.782 -17.579 19.106 hybrid contribution 0.515 -1.484 0.103 1.574 sum 5.264 -7.266 -17.476 19.645 Atomic orbital electron populations 1.22076 0.98520 0.99055 1.00898 1.18743 0.91007 0.94054 0.80088 0.93302 1.21237 1.32365 1.13172 0.90384 0.92091 1.24895 0.94860 0.94949 0.99050 1.69908 1.35969 1.22435 1.23820 0.86450 0.79156 0.79258 0.82234 1.20598 1.19853 1.21081 1.46515 1.65064 1.13553 1.10583 1.20298 0.78642 0.87492 0.84734 1.90656 1.51529 1.16137 1.85265 1.21584 1.03354 0.99188 0.93387 1.19696 1.03110 0.96569 0.85770 1.24486 0.86905 0.96241 0.96885 1.70482 1.21181 1.21803 1.13266 1.26131 0.90709 0.94017 0.93348 1.48161 1.05613 1.44269 1.22737 0.71506 1.78068 1.16228 1.18616 1.01450 0.96607 0.95541 0.89200 0.92611 0.77920 0.88977 0.89370 0.88682 0.88125 0.76232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.38 16 2 C 0.26 6.81 2.56 -69.09 -0.18 6.64 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 4 C -0.53 -14.33 8.73 -34.44 -0.30 -14.63 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.21 11.32 55.43 0.63 -24.58 16 8 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.71 -15.02 5.07 -54.93 -0.28 -15.30 16 13 C 0.50 10.10 7.79 -10.98 -0.09 10.02 16 14 O -0.56 -13.29 15.64 5.56 0.09 -13.21 16 15 C -0.13 -1.99 5.68 -27.88 -0.16 -2.15 16 16 C -0.01 -0.16 5.13 -27.88 -0.14 -0.31 16 17 C 0.24 3.29 7.39 -156.85 -1.16 2.13 16 18 N -0.54 -6.87 11.19 -11.97 -0.13 -7.00 16 19 C 0.26 2.08 13.13 -90.65 -1.19 0.89 16 20 N -0.49 -4.08 7.45 29.53 0.22 -3.86 16 21 H 0.44 1.85 8.96 -182.33 -1.63 0.22 16 22 N -0.31 -4.09 12.80 32.42 0.41 -3.68 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.39 7.11 8.54 -40.82 -0.35 6.76 16 28 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.09 1.43 8.10 -51.93 -0.42 1.01 16 31 H 0.10 1.54 8.10 -51.93 -0.42 1.12 16 32 H 0.22 0.58 8.06 -52.49 -0.42 0.16 16 LS Contribution 283.33 15.07 4.27 4.27 Total: -1.00 -34.48 283.33 -7.97 -42.45 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.19 Total: 4.20 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -2.96 Total: 0.89 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.85 Total: -54.42 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.09 Total: -13.21 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -34.48 -7.97 -42.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318966325.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.088 kcal (2) G-P(sol) polarization free energy of solvation -34.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds