Wall clock time and date at job start Thu Apr 9 2020 12:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46811 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47092 * 180.02562 * 16 15 13 18 18 N 1.33244 * 125.52117 * 269.69099 * 17 16 15 19 19 C 1.30842 * 109.82497 * 179.85411 * 18 17 16 20 20 N 1.34430 * 108.07613 * 0.40240 * 19 18 17 21 21 H 0.97003 * 126.82216 * 179.78492 * 20 19 18 22 22 N 1.30711 * 125.53092 * 89.99714 * 17 16 15 23 23 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 28 28 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 29 29 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 30 30 H 1.09005 * 109.46886 * 299.99809 * 16 15 13 31 31 H 1.09003 * 109.47641 * 59.99741 * 16 15 13 32 32 H 1.07998 * 125.95670 * 180.12537 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 6 2.7010 0.2548 -4.7588 17 6 3.2021 -0.4557 -5.9896 18 7 4.4780 -0.5550 -6.3606 19 6 4.5648 -1.2384 -7.4730 20 7 3.3215 -1.5880 -7.8458 21 1 3.0721 -2.0974 -8.6328 22 7 2.4553 -1.0697 -6.8693 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7089 1.1611 3.4845 27 1 2.2490 -1.6317 -1.1527 28 1 3.6480 -1.1211 -3.3986 29 1 1.9760 -1.5503 -3.8327 30 1 1.7019 0.6477 -4.9480 31 1 3.3741 1.0764 -4.5137 32 1 5.4760 -1.4758 -8.0019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318966325.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:06 Heat of formation + Delta-G solvation = 9.677880 kcal Electronic energy + Delta-G solvation = -16142.240441 eV Core-core repulsion = 13331.209982 eV Total energy + Delta-G solvation = -2811.030459 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.04639 -40.55160 -36.79637 -35.18062 -34.28418 -32.97016 -31.79200 -30.56033 -27.33368 -26.32681 -23.64912 -22.85089 -21.22885 -20.95233 -19.22558 -18.87281 -17.47910 -17.14890 -16.63489 -16.43484 -15.92133 -15.74889 -14.97626 -14.45552 -14.19031 -14.02655 -13.55693 -13.20664 -13.07666 -12.94974 -12.82235 -12.67962 -12.27124 -12.13656 -12.10690 -11.09042 -11.07739 -11.02736 -10.81620 -10.61766 -10.50413 -9.71176 -8.15607 -6.33119 0.67202 1.46309 1.47308 1.57977 1.83525 1.85782 1.89562 2.38383 2.66745 3.14583 3.28662 3.70543 3.90418 4.16117 4.26109 4.37777 4.61146 4.79047 4.94287 4.95303 5.02176 5.12389 5.27836 5.37874 5.46480 5.64122 5.71979 5.93466 6.12475 6.31086 6.75083 6.99712 7.14221 7.34557 7.59416 8.90813 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.053961 B = 0.004178 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.767786 B = 6699.656453 C = 6949.184684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.268 3.732 3 H -0.001 1.001 4 C -0.547 4.547 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.271 1.271 10 H -0.264 1.264 11 H -0.287 1.287 12 N -0.706 5.706 13 C 0.501 3.499 14 O -0.599 6.599 15 C -0.112 4.112 16 C -0.006 4.006 17 C 0.224 3.776 18 N -0.580 5.580 19 C 0.278 3.722 20 N -0.475 5.475 21 H 0.458 0.542 22 N -0.343 5.343 23 H 0.012 0.988 24 H 0.040 0.960 25 H 0.066 0.934 26 H 0.265 0.735 27 H 0.406 0.594 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.929 -9.305 -19.175 22.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.164 3.836 3 H 0.017 0.983 4 C -0.585 4.585 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.197 1.197 10 H -0.188 1.188 11 H -0.212 1.212 12 N -0.355 5.355 13 C 0.288 3.712 14 O -0.481 6.481 15 C -0.153 4.153 16 C -0.047 4.047 17 C -0.058 4.058 18 N -0.309 5.309 19 C -0.020 4.020 20 N -0.195 5.195 21 H 0.308 0.692 22 N -0.174 5.174 23 H 0.032 0.968 24 H 0.059 0.941 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.241 0.759 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 6.145 -8.250 -18.818 21.446 hybrid contribution 0.112 -0.720 0.336 0.803 sum 6.257 -8.970 -18.482 21.475 Atomic orbital electron populations 1.21900 0.98342 0.99435 0.99587 1.18361 0.91139 0.92033 0.82076 0.98274 1.21566 1.32576 1.13553 0.90844 0.90828 1.25824 0.94899 0.95579 1.02380 1.70061 1.37079 1.23942 1.24584 0.85321 0.78978 0.77998 0.77881 1.19654 1.18780 1.21235 1.46283 1.65178 1.14282 1.09750 1.21173 0.77357 0.87058 0.85612 1.90637 1.53167 1.18343 1.85993 1.21450 1.04418 0.98994 0.90476 1.19483 1.02239 0.96323 0.86636 1.24113 0.87711 0.97111 0.96892 1.70436 1.20826 1.23957 1.15672 1.27106 0.91887 0.91284 0.91759 1.48077 1.05284 1.43677 1.22469 0.69247 1.77952 1.17759 1.19271 1.02399 0.96844 0.94109 0.91533 0.92565 0.75940 0.87075 0.87193 0.89862 0.89530 0.70896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.94 9.26 71.98 0.67 -6.27 16 2 C 0.27 14.18 2.56 44.24 0.11 14.29 16 3 H 0.00 -0.04 7.58 -2.39 -0.02 -0.06 16 4 C -0.55 -29.39 8.73 25.60 0.22 -29.16 16 5 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -53.40 11.32 21.45 0.24 -53.16 16 8 Si 0.97 42.37 29.54 68.60 2.03 44.40 16 9 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 10 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 11 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 12 N -0.71 -29.83 5.07 -446.10 -2.26 -32.09 16 13 C 0.50 20.24 7.79 87.66 0.68 20.92 16 14 O -0.60 -29.70 15.64 -3.02 -0.05 -29.75 16 15 C -0.11 -3.24 5.68 29.85 0.17 -3.07 16 16 C -0.01 -0.19 5.13 29.85 0.15 -0.03 16 17 C 0.22 5.97 7.39 138.63 1.03 6.99 16 18 N -0.58 -13.61 11.19 -191.80 -2.15 -15.75 16 19 C 0.28 3.52 13.13 180.36 2.37 5.89 16 20 N -0.48 -6.51 7.45 -60.48 -0.45 -6.96 16 21 H 0.46 2.36 8.96 -213.09 -1.91 0.45 16 22 N -0.34 -8.39 12.80 -51.34 -0.66 -9.05 16 23 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 24 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 26 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 27 H 0.41 14.30 8.54 -92.70 -0.79 13.50 16 28 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 29 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.08 2.59 8.10 -2.38 -0.02 2.57 16 31 H 0.09 2.74 8.10 -2.39 -0.02 2.72 16 32 H 0.28 -0.01 8.06 -2.91 -0.02 -0.04 16 Total: -1.00 -76.86 283.33 1.01 -75.85 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -1.55 Total: 15.79 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 5.85 Total: 10.71 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -5.27 Total: -117.01 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.05 Total: -29.75 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -76.86 1.01 -75.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318966325.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.530 kcal (2) G-P(sol) polarization free energy of solvation -76.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds