Wall clock time and date at job start Thu Apr 9 2020 12:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47057 * 2 1 4 4 C 1.50701 * 109.47030 * 119.99884 * 2 1 3 5 5 H 1.07998 * 120.00137 * 119.99511 * 4 2 1 6 6 C 1.37880 * 119.99894 * 300.00305 * 4 2 1 7 7 N 1.31513 * 120.00042 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99820 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47470 * 359.97438 * 8 6 4 10 10 H 1.48508 * 109.47358 * 119.99867 * 8 6 4 11 11 H 1.48501 * 109.47152 * 239.99365 * 8 6 4 12 12 O 1.45198 * 109.47173 * 239.99759 * 2 1 3 13 13 C 1.34231 * 116.99806 * 90.00241 * 12 2 1 14 14 O 1.20822 * 120.00002 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99769 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.46963 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.63900 * 55.00172 * 16 15 13 18 18 C 1.53028 * 109.64323 * 294.58065 * 16 15 13 19 19 C 1.50550 * 109.88671 * 190.83899 * 18 16 15 20 20 C 1.29435 * 124.16206 * 17.00245 * 19 18 16 21 21 C 1.50069 * 124.07822 * 359.58679 * 20 19 18 22 22 C 1.53024 * 110.14560 * 17.12945 * 21 20 19 23 23 H 1.09005 * 109.47250 * 60.00215 * 1 2 3 24 24 H 1.08994 * 109.47536 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47385 * 300.00064 * 1 2 3 26 26 H 0.96999 * 120.00192 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46966 * 60.00245 * 15 13 12 28 28 H 1.08998 * 109.47317 * 300.00301 * 15 13 12 29 29 H 1.09002 * 109.35810 * 310.87655 * 18 16 15 30 30 H 1.09004 * 109.35470 * 70.45883 * 18 16 15 31 31 H 1.07999 * 117.87043 * 197.03741 * 19 18 16 32 32 H 1.08001 * 117.96137 * 179.56260 * 20 19 18 33 33 H 1.09000 * 109.35776 * 256.92770 * 21 20 19 34 34 H 1.08997 * 109.24845 * 137.26277 * 21 20 19 35 35 H 1.08999 * 109.64442 * 190.87690 * 22 21 20 36 36 H 1.09002 * 109.64365 * 70.24700 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.1473 -2.2863 3.6039 10 1 3.1471 -0.1856 4.8162 11 1 1.1677 -1.5865 4.8166 12 8 2.0140 -0.6845 -1.1855 13 6 2.2171 0.0640 -2.2811 14 8 1.9974 1.2517 -2.2506 15 6 2.7194 -0.5771 -3.5491 16 6 2.8633 0.4889 -4.6371 17 1 3.5020 1.2956 -4.2774 18 6 1.4842 1.0461 -4.9970 19 6 1.5820 1.8931 -6.2378 20 6 2.5789 1.8614 -7.0627 21 6 3.7827 0.9815 -6.8935 22 6 3.4816 -0.1370 -5.8936 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.7087 1.1614 3.4843 27 1 2.0105 -1.3373 -3.8773 28 1 3.6884 -1.0401 -3.3630 29 1 0.7964 0.2198 -5.1770 30 1 1.1115 1.6501 -4.1697 31 1 0.7685 2.5702 -6.4522 32 1 2.5419 2.5082 -7.9269 33 1 4.6179 1.5785 -6.5271 34 1 4.0463 0.5440 -7.8564 35 1 4.4058 -0.6514 -5.6300 36 1 2.7786 -0.8435 -6.3349 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122620419.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:04 Heat of formation + Delta-G solvation = -99.705767 kcal Electronic energy + Delta-G solvation = -16982.916715 eV Core-core repulsion = 14238.390618 eV Total energy + Delta-G solvation = -2744.526097 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.80433 -38.27085 -35.66418 -33.24913 -32.68946 -30.70605 -29.64270 -27.33672 -25.30258 -23.30411 -22.20632 -20.75634 -19.38470 -17.93583 -16.82437 -16.58064 -15.88262 -15.32806 -15.18230 -14.53285 -14.22612 -13.54730 -13.31220 -12.76963 -12.70676 -12.41007 -12.23067 -11.93029 -11.75190 -11.49077 -11.17150 -11.04385 -10.79996 -10.65174 -10.52741 -10.33383 -10.27350 -10.10390 -9.51124 -9.43694 -8.92012 -8.87149 -8.48303 -6.17430 -4.24121 2.33742 3.07299 3.24054 3.30765 3.35780 3.73631 4.34683 4.66843 4.74606 4.93625 5.15585 5.22829 5.23136 5.35997 5.51413 5.56335 5.71957 5.77981 5.83056 5.85435 5.94395 6.03220 6.18878 6.35365 6.48387 6.67060 6.69158 6.90249 6.94041 7.00767 7.22392 7.62333 7.75409 7.97520 8.16967 8.68308 8.92683 9.41548 10.90072 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.055902 B = 0.004773 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.754498 B = 5865.176224 C = 6122.929240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.046 0.954 4 C -0.520 4.520 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.911 3.089 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.281 1.281 12 O -0.359 6.359 13 C 0.450 3.550 14 O -0.520 6.520 15 C -0.113 4.113 16 C -0.075 4.075 17 H 0.081 0.919 18 C -0.096 4.096 19 C -0.141 4.141 20 C -0.171 4.171 21 C -0.088 4.088 22 C -0.115 4.115 23 H 0.015 0.985 24 H 0.036 0.964 25 H 0.098 0.902 26 H 0.265 0.735 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.159 -1.568 -15.850 16.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.064 0.936 4 C -0.558 4.558 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.207 1.207 12 O -0.276 6.276 13 C 0.293 3.707 14 O -0.411 6.411 15 C -0.151 4.151 16 C -0.093 4.093 17 H 0.100 0.900 18 C -0.133 4.133 19 C -0.159 4.159 20 C -0.189 4.189 21 C -0.125 4.125 22 C -0.153 4.153 23 H 0.035 0.965 24 H 0.055 0.945 25 H 0.117 0.883 26 H 0.075 0.925 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.990 -1.105 -15.641 15.962 hybrid contribution 0.099 -0.172 0.854 0.877 sum 3.089 -1.277 -14.787 15.160 Atomic orbital electron populations 1.22148 0.97642 1.00027 1.01346 1.20606 0.91340 0.93910 0.77974 0.93609 1.21084 1.32347 1.13414 0.88973 0.91307 1.24893 0.94953 0.95099 0.99081 1.69911 1.36200 1.22604 1.24026 0.86231 0.78636 0.79500 0.81836 1.19478 1.20756 1.20723 1.86485 1.75786 1.43786 1.21494 1.23403 0.74947 0.86091 0.86239 1.90558 1.48859 1.17014 1.84666 1.21445 1.03522 0.99328 0.90775 1.21021 0.97749 0.97219 0.93333 0.90017 1.20781 0.96814 0.99194 0.96522 1.22215 0.98369 0.99311 0.95997 1.21975 0.96397 1.00882 0.99654 1.20407 0.96604 0.96261 0.99188 1.21666 1.00820 0.97562 0.95207 0.96550 0.94508 0.88327 0.92488 0.88437 0.88246 0.91270 0.88812 0.88269 0.88411 0.91036 0.91363 0.91443 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.33 37.16 0.35 -3.60 16 2 C 0.21 5.82 2.56 -27.88 -0.07 5.75 16 3 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -14.77 8.90 -34.44 -0.31 -15.08 16 5 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.49 11.32 55.43 0.63 -24.86 16 8 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 O -0.36 -8.61 9.86 -39.26 -0.39 -9.00 16 13 C 0.45 9.25 7.69 36.01 0.28 9.53 16 14 O -0.52 -11.98 13.28 -18.75 -0.25 -12.23 16 15 C -0.11 -1.63 5.29 -27.88 -0.15 -1.77 16 16 C -0.07 -0.99 1.86 -90.40 -0.17 -1.16 16 17 H 0.08 1.22 7.94 -51.93 -0.41 0.81 16 18 C -0.10 -1.33 5.09 -27.94 -0.14 -1.47 16 19 C -0.14 -1.72 9.82 -35.67 -0.35 -2.07 16 20 C -0.17 -1.86 9.80 -35.90 -0.35 -2.21 16 21 C -0.09 -0.86 6.12 -28.18 -0.17 -1.03 16 22 C -0.12 -1.18 5.31 -26.51 -0.14 -1.32 16 23 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.10 2.70 6.07 -51.93 -0.32 2.38 16 26 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.10 1.23 8.10 -51.93 -0.42 0.81 16 28 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 30 H 0.09 1.56 6.25 -51.93 -0.32 1.24 16 31 H 0.10 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.10 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 LS Contribution 295.19 15.07 4.45 4.45 Total: -1.00 -30.39 295.19 -7.52 -37.91 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.61 Total: 0.38 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -1.32 Total: -12.81 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.63 Total: -24.86 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.64 Total: -21.23 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.39 -7.52 -37.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122620419.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.800 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds