Wall clock time and date at job start Thu Apr 9 2020 12:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47057 * 2 1 4 4 C 1.50701 * 109.47030 * 119.99884 * 2 1 3 5 5 H 1.07998 * 120.00137 * 119.99511 * 4 2 1 6 6 C 1.37880 * 119.99894 * 300.00305 * 4 2 1 7 7 N 1.31513 * 120.00042 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99820 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47470 * 359.97438 * 8 6 4 10 10 H 1.48508 * 109.47358 * 119.99867 * 8 6 4 11 11 H 1.48501 * 109.47152 * 239.99365 * 8 6 4 12 12 O 1.45198 * 109.47173 * 239.99759 * 2 1 3 13 13 C 1.34231 * 116.99806 * 90.00241 * 12 2 1 14 14 O 1.20822 * 120.00002 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99769 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.46963 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.63900 * 55.00172 * 16 15 13 18 18 C 1.53028 * 109.64323 * 294.58065 * 16 15 13 19 19 C 1.50550 * 109.88671 * 190.83899 * 18 16 15 20 20 C 1.29435 * 124.16206 * 17.00245 * 19 18 16 21 21 C 1.50069 * 124.07822 * 359.58679 * 20 19 18 22 22 C 1.53024 * 110.14560 * 17.12945 * 21 20 19 23 23 H 1.09005 * 109.47250 * 60.00215 * 1 2 3 24 24 H 1.08994 * 109.47536 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47385 * 300.00064 * 1 2 3 26 26 H 0.96999 * 120.00192 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46966 * 60.00245 * 15 13 12 28 28 H 1.08998 * 109.47317 * 300.00301 * 15 13 12 29 29 H 1.09002 * 109.35810 * 310.87655 * 18 16 15 30 30 H 1.09004 * 109.35470 * 70.45883 * 18 16 15 31 31 H 1.07999 * 117.87043 * 197.03741 * 19 18 16 32 32 H 1.08001 * 117.96137 * 179.56260 * 20 19 18 33 33 H 1.09000 * 109.35776 * 256.92770 * 21 20 19 34 34 H 1.08997 * 109.24845 * 137.26277 * 21 20 19 35 35 H 1.08999 * 109.64442 * 190.87690 * 22 21 20 36 36 H 1.09002 * 109.64365 * 70.24700 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.1473 -2.2863 3.6039 10 1 3.1471 -0.1856 4.8162 11 1 1.1677 -1.5865 4.8166 12 8 2.0140 -0.6845 -1.1855 13 6 2.2171 0.0640 -2.2811 14 8 1.9974 1.2517 -2.2506 15 6 2.7194 -0.5771 -3.5491 16 6 2.8633 0.4889 -4.6371 17 1 3.5020 1.2956 -4.2774 18 6 1.4842 1.0461 -4.9970 19 6 1.5820 1.8931 -6.2378 20 6 2.5789 1.8614 -7.0627 21 6 3.7827 0.9815 -6.8935 22 6 3.4816 -0.1370 -5.8936 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.7087 1.1614 3.4843 27 1 2.0105 -1.3373 -3.8773 28 1 3.6884 -1.0401 -3.3630 29 1 0.7964 0.2198 -5.1770 30 1 1.1115 1.6501 -4.1697 31 1 0.7685 2.5702 -6.4522 32 1 2.5419 2.5082 -7.9269 33 1 4.6179 1.5785 -6.5271 34 1 4.0463 0.5440 -7.8564 35 1 4.4058 -0.6514 -5.6300 36 1 2.7786 -0.8435 -6.3349 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122620419.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:04 Heat of formation + Delta-G solvation = -115.801266 kcal Electronic energy + Delta-G solvation = -16983.614668 eV Core-core repulsion = 14238.390618 eV Total energy + Delta-G solvation = -2745.224050 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.42101 -39.42706 -37.47504 -35.32427 -33.82603 -31.71144 -31.56301 -28.56794 -27.46015 -24.40956 -23.65699 -22.20672 -21.02527 -18.97943 -18.70026 -18.38124 -17.18958 -16.84766 -16.82284 -16.27543 -15.29849 -14.94914 -14.57210 -14.23384 -14.12877 -13.85950 -13.56636 -13.18853 -13.16746 -13.04248 -12.90336 -12.77968 -12.48133 -12.39437 -12.14131 -11.75892 -11.56446 -11.52129 -11.03989 -10.98903 -10.95633 -10.60565 -9.83091 -8.29427 -6.46498 1.40436 1.41990 1.42884 1.45287 1.56590 2.09043 2.43478 3.01257 3.66093 3.79081 3.89069 4.11905 4.26512 4.41565 4.48142 4.53363 4.54731 4.70532 4.74102 4.77011 4.80276 4.83361 4.94840 5.04911 5.10169 5.19020 5.23893 5.38492 5.48867 5.49873 5.63560 5.80688 5.93553 6.09130 6.15430 6.60216 7.03066 7.26771 8.78571 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.055902 B = 0.004773 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.754498 B = 5865.176224 C = 6122.929240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.216 3.784 3 H 0.005 0.995 4 C -0.548 4.548 5 H 0.068 0.932 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.984 3.016 9 H -0.262 1.262 10 H -0.276 1.276 11 H -0.271 1.271 12 O -0.368 6.368 13 C 0.440 3.560 14 O -0.551 6.551 15 C -0.101 4.101 16 C -0.072 4.072 17 H 0.059 0.941 18 C -0.096 4.096 19 C -0.167 4.167 20 C -0.158 4.158 21 C -0.092 4.092 22 C -0.108 4.108 23 H 0.022 0.978 24 H 0.045 0.955 25 H 0.079 0.921 26 H 0.271 0.729 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.312 -3.215 -17.006 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.163 3.837 3 H 0.023 0.977 4 C -0.586 4.586 5 H 0.086 0.914 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.807 3.193 9 H -0.186 1.186 10 H -0.201 1.201 11 H -0.196 1.196 12 O -0.284 6.284 13 C 0.286 3.714 14 O -0.442 6.442 15 C -0.139 4.139 16 C -0.091 4.091 17 H 0.077 0.923 18 C -0.133 4.133 19 C -0.186 4.186 20 C -0.176 4.176 21 C -0.129 4.129 22 C -0.146 4.146 23 H 0.041 0.959 24 H 0.065 0.935 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.142 0.858 28 H 0.143 0.857 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.133 0.867 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.144 -2.752 -16.826 17.546 hybrid contribution -0.251 0.422 1.128 1.231 sum 3.893 -2.330 -15.697 16.340 Atomic orbital electron populations 1.21965 0.96877 1.00326 1.00691 1.20294 0.91951 0.91985 0.79489 0.97723 1.21355 1.33336 1.13865 0.90034 0.91411 1.25861 0.94700 0.95659 1.02240 1.70031 1.36711 1.23740 1.25148 0.85116 0.78359 0.78423 0.77382 1.18605 1.20128 1.19641 1.86479 1.76284 1.43982 1.21686 1.24736 0.73897 0.85962 0.86829 1.90555 1.50009 1.18616 1.85042 1.21643 1.05040 0.99837 0.87331 1.21020 0.97189 0.96456 0.94449 0.92274 1.20686 0.97328 0.99198 0.96043 1.22188 0.99763 1.00428 0.96177 1.22281 0.95808 1.00244 0.99285 1.20519 0.95978 0.96041 1.00320 1.21657 1.01654 0.97843 0.93396 0.95868 0.93543 0.90238 0.92021 0.85791 0.85656 0.90583 0.92799 0.88084 0.86672 0.90756 0.88811 0.89543 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.42 9.33 71.98 0.67 -6.75 16 2 C 0.22 12.15 2.56 29.85 0.08 12.22 16 3 H 0.00 0.31 7.16 -2.39 -0.02 0.30 16 4 C -0.55 -31.63 8.90 25.60 0.23 -31.40 16 5 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 6 C 0.01 0.83 5.30 84.66 0.45 1.28 16 7 N -0.92 -53.49 11.32 21.45 0.24 -53.25 16 8 Si 0.98 43.18 29.54 68.60 2.03 45.21 16 9 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 10 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 12 O -0.37 -17.93 9.86 -51.42 -0.51 -18.43 16 13 C 0.44 18.41 7.69 71.24 0.55 18.95 16 14 O -0.55 -26.55 13.28 21.98 0.29 -26.26 16 15 C -0.10 -2.76 5.29 29.85 0.16 -2.60 16 16 C -0.07 -1.84 1.86 -10.65 -0.02 -1.86 16 17 H 0.06 1.76 7.94 -2.39 -0.02 1.74 16 18 C -0.10 -2.65 5.09 29.81 0.15 -2.50 16 19 C -0.17 -3.98 9.82 27.20 0.27 -3.71 16 20 C -0.16 -3.09 9.80 27.05 0.27 -2.82 16 21 C -0.09 -1.49 6.12 29.66 0.18 -1.31 16 22 C -0.11 -1.87 5.31 30.73 0.16 -1.71 16 23 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 24 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.08 4.49 6.07 -2.39 -0.01 4.48 16 26 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 27 H 0.12 2.78 8.10 -2.38 -0.02 2.76 16 28 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.08 1.92 8.07 -2.39 -0.02 1.90 16 30 H 0.05 1.91 6.25 -2.38 -0.01 1.89 16 31 H 0.10 2.28 8.06 -2.91 -0.02 2.25 16 32 H 0.12 1.85 8.06 -2.91 -0.02 1.82 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.20 8.13 -2.39 -0.02 1.18 16 Total: -1.00 -67.66 295.19 6.23 -61.43 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 1.04 Total: 13.52 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 3.14 Total: -22.21 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.24 Total: -53.25 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -0.22 Total: -44.69 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -67.66 6.23 -61.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122620419.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.373 kcal (2) G-P(sol) polarization free energy of solvation -67.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds