Wall clock time and date at job start Thu Apr 9 2020 12:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99958 * 2 1 4 4 H 1.48501 * 109.47278 * 270.00114 * 3 2 1 5 5 H 1.48496 * 109.47140 * 30.00712 * 3 2 1 6 6 H 1.48503 * 109.46831 * 150.00248 * 3 2 1 7 7 C 1.38815 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99614 * 359.97438 * 7 2 1 9 9 N 1.36930 * 119.99952 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00076 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47477 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.46947 * 180.02562 * 11 10 9 13 13 C 1.34784 * 119.99430 * 179.97438 * 12 11 10 14 14 O 1.21285 * 119.99987 * 0.02562 * 13 12 11 15 15 C 1.50694 * 119.99822 * 179.97438 * 13 12 11 16 16 C 1.52995 * 109.47526 * 180.02562 * 15 13 12 17 17 H 1.09005 * 110.34285 * 307.29383 * 16 15 13 18 18 C 1.51100 * 110.38835 * 69.69591 * 16 15 13 19 19 C 1.30724 * 111.14096 * 135.34907 * 18 16 15 20 20 C 1.51106 * 110.98690 * 359.84700 * 19 18 16 21 21 C 1.54630 * 110.39121 * 185.00436 * 16 15 13 22 22 H 0.96995 * 119.99959 * 359.97438 * 1 2 3 23 23 H 0.97001 * 120.00483 * 0.02562 * 9 7 2 24 24 H 1.09004 * 109.47051 * 59.99641 * 10 9 7 25 25 H 1.09005 * 109.47133 * 300.00193 * 10 9 7 26 26 H 1.08994 * 109.47135 * 59.99601 * 11 10 9 27 27 H 1.09005 * 109.46685 * 299.99963 * 11 10 9 28 28 H 0.96990 * 120.00406 * 359.97438 * 12 11 10 29 29 H 1.09004 * 109.47061 * 60.00515 * 15 13 12 30 30 H 1.09002 * 109.47721 * 300.00949 * 15 13 12 31 31 H 1.08003 * 124.44615 * 315.27786 * 18 16 15 32 32 H 1.08003 * 124.56566 * 179.97438 * 19 18 16 33 33 H 1.09002 * 110.38747 * 224.83749 * 20 19 18 34 34 H 1.09000 * 110.38500 * 102.57217 * 20 19 18 35 35 H 1.09003 * 111.03946 * 98.52311 * 21 16 15 36 36 H 1.09001 * 111.07005 * 334.60155 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1122 -2.4709 -0.0022 11 6 5.6164 -2.1914 -0.0020 12 7 6.3488 -3.4602 -0.0037 13 6 7.6967 -3.4601 -0.0043 14 8 8.3030 -2.4098 -0.0030 15 6 8.4501 -4.7652 -0.0056 16 6 9.9543 -4.4857 -0.0054 17 1 10.2137 -3.8069 -0.8179 18 6 10.3822 -3.9075 1.3234 19 6 11.4810 -4.4719 1.7512 20 6 11.9641 -5.5224 0.7784 21 6 10.7478 -5.8068 -0.1331 22 1 -0.4850 0.8400 0.0004 23 1 3.8647 -0.3621 -0.0007 24 1 3.8484 -3.0419 -0.8925 25 1 3.8492 -3.0431 0.8875 26 1 5.8797 -1.6206 0.8885 27 1 5.8797 -1.6190 -0.8915 28 1 5.8639 -4.3001 -0.0044 29 1 8.1864 -5.3361 -0.8959 30 1 8.1871 -5.3375 0.8841 31 1 9.8507 -3.1290 1.8505 32 1 11.9773 -4.2228 2.6776 33 1 12.2590 -6.4264 1.3113 34 1 12.7983 -5.1401 0.1901 35 1 11.0618 -5.9767 -1.1630 36 1 10.1673 -6.6502 0.2408 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123323525.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:11 Heat of formation + Delta-G solvation = -16.418941 kcal Electronic energy + Delta-G solvation = -16174.415004 eV Core-core repulsion = 13465.793246 eV Total energy + Delta-G solvation = -2708.621758 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.02871 -38.38636 -35.82920 -33.91543 -31.95135 -31.25997 -29.13692 -28.28378 -25.54338 -23.20455 -21.49335 -20.81110 -20.30104 -18.85346 -17.79492 -16.93665 -16.04902 -15.98556 -15.48163 -15.04061 -14.36221 -14.18913 -13.77035 -13.55566 -12.88510 -12.64896 -12.25898 -12.05763 -12.04247 -11.57002 -11.51467 -11.48383 -11.34562 -10.99937 -10.91010 -10.85447 -10.17276 -9.76402 -9.62784 -9.06004 -9.02417 -8.88139 -7.31720 -5.81390 -3.18803 2.14056 2.70435 3.23071 3.37552 3.41284 3.45251 4.36636 4.40084 4.56439 4.64149 4.82231 5.01487 5.17037 5.24660 5.32262 5.36623 5.42089 5.44288 5.56483 5.60349 5.64945 5.65323 5.72248 5.94374 5.97668 6.06297 6.38249 6.43552 6.58028 6.63525 6.74828 7.57424 7.92109 8.29411 8.36853 9.14453 9.86802 10.05232 11.36497 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.062013 B = 0.003649 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.413485 B = 7670.594356 C = 7946.632737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.249 4.249 8 H 0.091 0.909 9 N -0.753 5.753 10 C 0.149 3.851 11 C 0.107 3.893 12 N -0.726 5.726 13 C 0.509 3.491 14 O -0.541 6.541 15 C -0.133 4.133 16 C -0.054 4.054 17 H 0.091 0.909 18 C -0.139 4.139 19 C -0.185 4.185 20 C -0.099 4.099 21 C -0.122 4.122 22 H 0.261 0.739 23 H 0.363 0.637 24 H 0.033 0.967 25 H 0.032 0.968 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.401 0.599 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.909 -13.346 0.719 25.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.021 3.979 11 C -0.017 4.017 12 N -0.377 5.377 13 C 0.295 3.705 14 O -0.418 6.418 15 C -0.173 4.173 16 C -0.073 4.073 17 H 0.109 0.891 18 C -0.157 4.157 19 C -0.203 4.203 20 C -0.136 4.136 21 C -0.160 4.160 22 H 0.071 0.929 23 H 0.196 0.804 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.235 0.765 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 22.087 -12.659 0.713 25.468 hybrid contribution 0.166 0.924 0.081 0.942 sum 22.253 -11.735 0.793 25.170 Atomic orbital electron populations 1.69701 1.05116 1.26009 1.57117 1.24678 0.95271 0.97334 1.01656 0.86538 0.79280 0.84750 0.77944 1.20901 1.21564 1.20183 1.19012 0.80240 0.94878 1.43739 0.89091 1.42540 1.04157 1.01886 1.91343 1.20734 0.87750 0.90209 0.99238 1.21575 0.92451 0.85347 1.02308 1.45956 1.06377 1.10059 1.75338 1.20682 0.82215 0.91590 0.76025 1.90704 1.68087 1.33666 1.49378 1.21720 0.95404 0.95721 1.04414 1.20823 0.92603 0.96409 0.97440 0.89138 1.23375 0.97260 0.99047 0.96053 1.23292 0.98064 0.99366 0.99557 1.21328 0.98082 0.97882 0.96292 1.22565 0.96412 0.97007 1.00016 0.92924 0.80392 0.94925 0.94992 0.91488 0.91470 0.76534 0.88702 0.88752 0.85746 0.86083 0.91426 0.90969 0.90849 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.29 13.97 55.49 0.78 -28.51 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 22.29 27.74 -169.99 -4.71 17.57 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 7 C -0.25 -7.07 10.47 -15.06 -0.16 -7.23 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.75 -18.01 5.41 -59.91 -0.32 -18.33 16 10 C 0.15 2.77 6.37 -4.04 -0.03 2.74 16 11 C 0.11 1.73 5.79 -4.04 -0.02 1.71 16 12 N -0.73 -9.17 5.56 -60.29 -0.33 -9.51 16 13 C 0.51 6.63 7.63 -10.99 -0.08 6.55 16 14 O -0.54 -9.21 14.92 5.55 0.08 -9.13 16 15 C -0.13 -1.18 5.09 -27.89 -0.14 -1.32 16 16 C -0.05 -0.52 2.52 -90.72 -0.23 -0.75 16 17 H 0.09 1.01 7.90 -51.93 -0.41 0.60 16 18 C -0.14 -1.50 9.27 -35.75 -0.33 -1.84 16 19 C -0.18 -1.70 10.79 -35.75 -0.39 -2.09 16 20 C -0.10 -0.75 6.80 -26.82 -0.18 -0.93 16 21 C -0.12 -0.89 6.71 -25.01 -0.17 -1.06 16 22 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 23 H 0.36 8.56 5.53 -40.82 -0.23 8.33 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.40 3.89 8.47 -40.82 -0.35 3.54 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.12 1.54 7.58 -52.48 -0.40 1.14 16 32 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.46 7.91 -51.93 -0.41 0.05 16 LS Contribution 300.36 15.07 4.53 4.53 Total: -1.00 -33.46 300.36 -7.42 -40.88 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -5.61 Total: 6.61 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -1.82 Total: -4.10 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.12 Total: -56.35 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.08 Total: -9.13 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.46 -7.42 -40.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123323525.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.461 kcal (2) G-P(sol) polarization free energy of solvation -33.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds