Wall clock time and date at job start Thu Apr 9 2020 12:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 N 1.46502 * 109.47591 * 179.97438 * 11 10 9 13 13 C 1.34770 * 120.00587 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99583 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00154 * 179.97438 * 13 12 11 16 16 C 1.53003 * 109.46878 * 179.97438 * 15 13 12 17 17 H 1.08996 * 110.34488 * 52.71096 * 16 15 13 18 18 C 1.51102 * 110.38597 * 290.30014 * 16 15 13 19 19 C 1.30530 * 111.10346 * 224.75667 * 18 16 15 20 20 C 1.51099 * 111.10614 * 359.97438 * 19 18 16 21 21 C 1.54636 * 104.72383 * 16.43754 * 20 19 18 22 22 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 23 23 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 24 24 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 25 25 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 26 26 H 1.09004 * 109.47066 * 299.99732 * 11 10 9 27 27 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 28 28 H 0.97000 * 119.99258 * 359.97438 * 12 11 10 29 29 H 1.08998 * 109.46799 * 299.99279 * 15 13 12 30 30 H 1.08994 * 109.46990 * 59.99556 * 15 13 12 31 31 H 1.07999 * 124.44860 * 44.73301 * 18 16 15 32 32 H 1.08004 * 124.44451 * 179.97438 * 19 18 16 33 33 H 1.08997 * 110.38594 * 257.62824 * 20 19 18 34 34 H 1.09000 * 110.48384 * 135.29677 * 20 19 18 35 35 H 1.09002 * 111.03849 * 217.33656 * 21 20 19 36 36 H 1.08998 * 111.06939 * 93.41142 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 6 5.6163 -2.1913 -0.0115 12 7 6.3489 -3.4599 -0.0176 13 6 7.6965 -3.4600 -0.0221 14 8 8.3029 -2.4096 -0.0215 15 6 8.4500 -4.7651 -0.0278 16 6 9.9543 -4.4854 -0.0327 17 1 10.2167 -3.8093 0.7809 18 6 10.3770 -3.9032 -1.3614 19 6 11.4715 -4.4672 -1.7948 20 6 11.9614 -5.5193 -0.8272 21 6 10.7488 -5.8064 0.0884 22 1 -0.4851 0.8401 0.0004 23 1 3.8646 -0.3620 0.0004 24 1 3.8521 -3.0451 0.8825 25 1 3.8454 -3.0397 -0.8974 26 1 5.8762 -1.6170 -0.9008 27 1 5.8830 -1.6224 0.8791 28 1 5.8638 -4.3000 -0.0177 29 1 8.1897 -5.3387 0.8617 30 1 8.1837 -5.3345 -0.9182 31 1 9.8435 -3.1230 -1.8840 32 1 11.9623 -4.2151 -2.7233 33 1 12.7972 -5.1367 -0.2415 34 1 12.2555 -6.4223 -1.3622 35 1 11.0669 -5.9790 1.1165 36 1 10.1663 -6.6485 -0.2854 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123323527.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:13 Heat of formation + Delta-G solvation = -16.257784 kcal Electronic energy + Delta-G solvation = -16174.996070 eV Core-core repulsion = 13466.381300 eV Total energy + Delta-G solvation = -2708.614770 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.03312 -38.39717 -35.82916 -33.91517 -31.95288 -31.26196 -29.15020 -28.28370 -25.54242 -23.20457 -21.49337 -20.81375 -20.30114 -18.85010 -17.79431 -16.93717 -16.05051 -15.98827 -15.48383 -15.03872 -14.36433 -14.18796 -13.77038 -13.55456 -12.88486 -12.64791 -12.25993 -12.06298 -12.04310 -11.57059 -11.51278 -11.48479 -11.34425 -11.00228 -10.90274 -10.85753 -10.17235 -9.76384 -9.62824 -9.06861 -9.02570 -8.88165 -7.31748 -5.81406 -3.18831 2.14736 2.70514 3.23054 3.37548 3.41293 3.45255 4.36751 4.39866 4.56416 4.64125 4.82285 5.01453 5.17098 5.24732 5.32377 5.36619 5.42346 5.44113 5.56452 5.60493 5.64317 5.65872 5.72175 5.94380 5.97674 6.06343 6.38361 6.43734 6.58061 6.63523 6.75084 7.57436 7.92180 8.29444 8.36773 9.14473 9.86823 10.05194 11.36469 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.061982 B = 0.003650 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.636499 B = 7669.522830 C = 7945.443488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.249 4.249 8 H 0.091 0.909 9 N -0.753 5.753 10 C 0.149 3.851 11 C 0.107 3.893 12 N -0.725 5.725 13 C 0.509 3.491 14 O -0.541 6.541 15 C -0.132 4.132 16 C -0.054 4.054 17 H 0.090 0.910 18 C -0.139 4.139 19 C -0.185 4.185 20 C -0.099 4.099 21 C -0.123 4.123 22 H 0.261 0.739 23 H 0.363 0.637 24 H 0.032 0.968 25 H 0.033 0.967 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.401 0.599 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.904 -13.342 -0.825 25.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.021 3.979 11 C -0.017 4.017 12 N -0.377 5.377 13 C 0.295 3.705 14 O -0.418 6.418 15 C -0.173 4.173 16 C -0.073 4.073 17 H 0.108 0.892 18 C -0.157 4.157 19 C -0.202 4.202 20 C -0.136 4.136 21 C -0.160 4.160 22 H 0.071 0.929 23 H 0.196 0.804 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.235 0.765 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 22.082 -12.655 -0.811 25.465 hybrid contribution 0.165 0.925 -0.067 0.942 sum 22.247 -11.730 -0.878 25.165 Atomic orbital electron populations 1.69698 1.05123 1.26010 1.57104 1.24673 0.95267 0.97333 1.01649 0.86541 0.79288 0.84754 0.77942 1.20905 1.21562 1.20175 1.19013 0.80238 0.94876 1.43755 0.89092 1.42542 1.04158 1.01886 1.91346 1.20730 0.87748 0.90209 0.99236 1.21576 0.92451 0.85349 1.02308 1.45956 1.06380 1.10063 1.75329 1.20680 0.82215 0.91591 0.76028 1.90704 1.68090 1.33662 1.49383 1.21720 0.95404 0.95720 1.04409 1.20825 0.92614 0.96393 0.97466 0.89150 1.23322 0.97316 0.99048 0.96036 1.23236 0.98092 0.99352 0.99565 1.21325 0.98081 0.97863 0.96300 1.22564 0.96432 0.97010 1.00005 0.92921 0.80391 0.94978 0.94940 0.91481 0.91478 0.76535 0.88706 0.88753 0.85739 0.86123 0.90963 0.91411 0.90852 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.28 13.97 55.49 0.78 -28.51 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 22.28 27.74 -169.99 -4.71 17.57 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.58 6.52 56.52 0.37 -6.22 16 7 C -0.25 -7.07 10.47 -15.06 -0.16 -7.23 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.75 -18.01 5.41 -59.91 -0.32 -18.33 16 10 C 0.15 2.77 6.37 -4.04 -0.03 2.74 16 11 C 0.11 1.73 5.79 -4.04 -0.02 1.71 16 12 N -0.73 -9.18 5.56 -60.29 -0.33 -9.51 16 13 C 0.51 6.63 7.63 -10.99 -0.08 6.55 16 14 O -0.54 -9.21 14.92 5.55 0.08 -9.13 16 15 C -0.13 -1.18 5.09 -27.88 -0.14 -1.32 16 16 C -0.05 -0.53 2.52 -90.72 -0.23 -0.75 16 17 H 0.09 1.01 7.90 -51.93 -0.41 0.60 16 18 C -0.14 -1.50 9.26 -35.70 -0.33 -1.83 16 19 C -0.18 -1.70 10.77 -35.70 -0.38 -2.08 16 20 C -0.10 -0.74 6.81 -26.83 -0.18 -0.93 16 21 C -0.12 -0.89 6.71 -25.02 -0.17 -1.06 16 22 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 23 H 0.36 8.56 5.53 -40.82 -0.23 8.33 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.40 3.89 8.47 -40.82 -0.35 3.54 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.12 1.54 7.59 -52.49 -0.40 1.14 16 32 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.46 7.91 -51.93 -0.41 0.05 16 LS Contribution 300.34 15.07 4.53 4.53 Total: -1.00 -33.45 300.34 -7.42 -40.88 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.61 Total: 6.60 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -1.82 Total: -4.09 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.12 Total: -56.35 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.08 Total: -9.13 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.45 -7.42 -40.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123323527.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.618 kcal (2) G-P(sol) polarization free energy of solvation -33.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds