Wall clock time and date at job start Thu Apr 9 2020 12:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 N 1.46502 * 109.47591 * 179.97438 * 11 10 9 13 13 C 1.34770 * 120.00587 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99583 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00154 * 179.97438 * 13 12 11 16 16 C 1.53003 * 109.46878 * 179.97438 * 15 13 12 17 17 H 1.08996 * 110.34488 * 52.71096 * 16 15 13 18 18 C 1.51102 * 110.38597 * 290.30014 * 16 15 13 19 19 C 1.30530 * 111.10346 * 224.75667 * 18 16 15 20 20 C 1.51099 * 111.10614 * 359.97438 * 19 18 16 21 21 C 1.54636 * 104.72383 * 16.43754 * 20 19 18 22 22 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 23 23 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 24 24 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 25 25 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 26 26 H 1.09004 * 109.47066 * 299.99732 * 11 10 9 27 27 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 28 28 H 0.97000 * 119.99258 * 359.97438 * 12 11 10 29 29 H 1.08998 * 109.46799 * 299.99279 * 15 13 12 30 30 H 1.08994 * 109.46990 * 59.99556 * 15 13 12 31 31 H 1.07999 * 124.44860 * 44.73301 * 18 16 15 32 32 H 1.08004 * 124.44451 * 179.97438 * 19 18 16 33 33 H 1.08997 * 110.38594 * 257.62824 * 20 19 18 34 34 H 1.09000 * 110.48384 * 135.29677 * 20 19 18 35 35 H 1.09002 * 111.03849 * 217.33656 * 21 20 19 36 36 H 1.08998 * 111.06939 * 93.41142 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 6 5.6163 -2.1913 -0.0115 12 7 6.3489 -3.4599 -0.0176 13 6 7.6965 -3.4600 -0.0221 14 8 8.3029 -2.4096 -0.0215 15 6 8.4500 -4.7651 -0.0278 16 6 9.9543 -4.4854 -0.0327 17 1 10.2167 -3.8093 0.7809 18 6 10.3770 -3.9032 -1.3614 19 6 11.4715 -4.4672 -1.7948 20 6 11.9614 -5.5193 -0.8272 21 6 10.7488 -5.8064 0.0884 22 1 -0.4851 0.8401 0.0004 23 1 3.8646 -0.3620 0.0004 24 1 3.8521 -3.0451 0.8825 25 1 3.8454 -3.0397 -0.8974 26 1 5.8762 -1.6170 -0.9008 27 1 5.8830 -1.6224 0.8791 28 1 5.8638 -4.3000 -0.0177 29 1 8.1897 -5.3387 0.8617 30 1 8.1837 -5.3345 -0.9182 31 1 9.8435 -3.1230 -1.8840 32 1 11.9623 -4.2151 -2.7233 33 1 12.7972 -5.1367 -0.2415 34 1 12.2555 -6.4223 -1.3622 35 1 11.0669 -5.9790 1.1165 36 1 10.1663 -6.6485 -0.2854 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123323527.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:13 Heat of formation + Delta-G solvation = -39.930526 kcal Electronic energy + Delta-G solvation = -16176.022597 eV Core-core repulsion = 13466.381300 eV Total energy + Delta-G solvation = -2709.641297 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.00223 -39.21470 -37.41648 -35.48794 -33.53154 -32.52291 -29.93421 -29.66865 -26.55480 -24.89285 -23.12399 -21.63493 -21.19261 -19.90252 -19.54621 -17.95653 -17.15327 -16.86740 -16.65635 -16.40147 -15.78253 -15.62564 -15.29547 -14.85825 -14.50141 -13.77796 -13.46480 -13.17044 -12.93123 -12.75654 -12.70345 -12.65023 -12.60700 -12.10689 -12.05536 -11.97373 -11.84382 -11.66861 -11.05168 -10.83885 -10.11134 -9.77869 -9.38103 -8.06887 -5.42260 1.37891 1.39467 1.39683 1.46813 1.69131 2.16798 2.45261 3.24936 3.60076 3.75035 3.78734 3.92416 4.00725 4.11370 4.18344 4.38810 4.51764 4.58521 4.61366 4.69576 4.79237 4.98173 5.00337 5.05166 5.08711 5.13244 5.31650 5.40202 5.46361 5.70130 5.71152 5.99984 6.16299 6.59440 7.01603 7.29784 7.76278 7.93759 9.13966 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.061982 B = 0.003650 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.636499 B = 7669.522830 C = 7945.443488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.059 4.059 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.255 1.255 7 C -0.239 4.239 8 H 0.064 0.936 9 N -0.760 5.760 10 C 0.150 3.850 11 C 0.122 3.878 12 N -0.716 5.716 13 C 0.505 3.495 14 O -0.586 6.586 15 C -0.122 4.122 16 C -0.056 4.056 17 H 0.068 0.932 18 C -0.170 4.170 19 C -0.174 4.174 20 C -0.101 4.101 21 C -0.115 4.115 22 H 0.260 0.740 23 H 0.366 0.634 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.417 0.583 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.007 -14.823 -0.652 28.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.252 4.252 3 Si 0.779 3.221 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.180 1.180 7 C -0.369 4.369 8 H 0.082 0.918 9 N -0.406 5.406 10 C 0.024 3.976 11 C -0.003 4.003 12 N -0.369 5.369 13 C 0.294 3.706 14 O -0.466 6.466 15 C -0.162 4.162 16 C -0.075 4.075 17 H 0.086 0.914 18 C -0.188 4.188 19 C -0.192 4.192 20 C -0.138 4.138 21 C -0.152 4.152 22 H 0.069 0.931 23 H 0.199 0.801 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.254 0.746 29 H 0.143 0.857 30 H 0.134 0.866 31 H 0.116 0.884 32 H 0.146 0.854 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 24.223 -14.200 -0.638 28.086 hybrid contribution -0.455 1.287 -0.155 1.374 sum 23.768 -12.913 -0.793 27.061 Atomic orbital electron populations 1.69863 1.07017 1.26862 1.59247 1.25483 0.96122 1.01218 1.02327 0.85450 0.78606 0.79797 0.78198 1.20354 1.21900 1.17985 1.19021 0.82198 0.93822 1.41904 0.91796 1.42580 1.02810 1.03983 1.91265 1.20837 0.88816 0.88168 0.99789 1.21176 0.90955 0.86814 1.01330 1.45825 1.06451 1.09550 1.75086 1.21489 0.81976 0.92630 0.74551 1.90690 1.68891 1.35686 1.51295 1.21772 0.94191 0.93464 1.06747 1.20827 0.93462 0.97299 0.95874 0.91403 1.23281 0.98552 0.99712 0.97254 1.23525 0.97024 0.98836 0.99823 1.21401 0.98373 0.97885 0.96105 1.22572 0.95890 0.95899 1.00844 0.93136 0.80100 0.94067 0.94088 0.92547 0.92539 0.74551 0.85737 0.86635 0.88352 0.85442 0.90505 0.89694 0.89572 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.68 13.97 21.65 0.30 -62.37 16 2 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 3 Si 0.95 45.96 27.74 68.60 1.90 47.86 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 6 H -0.26 -11.30 6.52 99.48 0.65 -10.65 16 7 C -0.24 -13.59 10.47 84.03 0.88 -12.71 16 8 H 0.06 3.91 8.06 -2.91 -0.02 3.89 16 9 N -0.76 -35.61 5.41 -343.46 -1.86 -37.47 16 10 C 0.15 5.40 6.37 86.38 0.55 5.95 16 11 C 0.12 3.80 5.79 86.38 0.50 4.30 16 12 N -0.72 -16.79 5.56 -463.06 -2.57 -19.36 16 13 C 0.51 12.51 7.63 87.66 0.67 13.18 16 14 O -0.59 -19.99 14.92 -3.04 -0.05 -20.03 16 15 C -0.12 -1.85 5.09 29.85 0.15 -1.70 16 16 C -0.06 -0.99 2.52 -10.86 -0.03 -1.02 16 17 H 0.07 1.49 7.90 -2.39 -0.02 1.47 16 18 C -0.17 -3.59 9.26 26.26 0.24 -3.34 16 19 C -0.17 -2.95 10.77 26.26 0.28 -2.67 16 20 C -0.10 -1.24 6.81 30.53 0.21 -1.04 16 21 C -0.11 -1.30 6.71 31.70 0.21 -1.09 16 22 H 0.26 15.80 8.31 -92.70 -0.77 15.02 16 23 H 0.37 16.68 5.53 -92.71 -0.51 16.16 16 24 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 25 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.42 6.97 8.47 -92.71 -0.79 6.18 16 29 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.12 1.32 8.13 -2.39 -0.02 1.30 16 31 H 0.10 2.55 7.59 -2.91 -0.02 2.53 16 32 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.09 0.75 7.91 -2.39 -0.02 0.73 16 Total: -1.00 -73.33 300.34 1.58 -71.75 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: -0.29 Total: 22.81 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 4.14 Total: -3.18 kcal Atomic # 7 Polarization: -115.08 SS G_CDS: -4.13 Total: -119.20 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.05 Total: -20.03 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.90 Total: 47.86 kcal Total: -73.33 1.58 -71.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123323527.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.819 kcal (2) G-P(sol) polarization free energy of solvation -73.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds