Wall clock time and date at job start Thu Apr 9 2020 12:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46791 * 2 1 4 4 C 1.50697 * 109.47319 * 120.00047 * 2 1 3 5 5 O 1.20826 * 120.00119 * 120.00014 * 4 2 1 6 6 O 1.34232 * 120.00114 * 300.00205 * 4 2 1 7 7 C 1.45199 * 117.00097 * 179.97438 * 6 4 2 8 8 H 1.09005 * 109.46686 * 30.00098 * 7 6 4 9 9 C 1.50692 * 109.46935 * 149.99741 * 7 6 4 10 10 H 1.07995 * 120.00604 * 0.02562 * 9 7 6 11 11 C 1.37883 * 120.00055 * 179.97438 * 9 7 6 12 12 N 1.31514 * 119.99534 * 0.02562 * 11 9 7 13 13 Si 1.86794 * 120.00263 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46998 * 90.00263 * 13 11 9 15 15 H 1.48505 * 109.47400 * 210.00319 * 13 11 9 16 16 H 1.48502 * 109.47289 * 330.00366 * 13 11 9 17 17 C 1.52997 * 109.47349 * 270.00168 * 7 6 4 18 18 C 1.52995 * 117.49959 * 128.74527 * 17 7 6 19 19 C 1.53003 * 117.49794 * 60.08665 * 17 7 6 20 20 C 1.52996 * 109.47138 * 240.00475 * 2 1 3 21 21 C 1.53000 * 117.49997 * 179.97438 * 20 2 1 22 22 C 1.53002 * 60.02940 * 252.49592 * 21 20 2 23 23 H 1.09001 * 109.47494 * 59.99823 * 1 2 3 24 24 H 1.09004 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47356 * 299.99703 * 1 2 3 26 26 H 0.97006 * 119.99647 * 180.02562 * 12 11 9 27 27 H 1.09001 * 115.54577 * 274.41883 * 17 7 6 28 28 H 1.09004 * 117.49999 * 359.97438 * 18 17 7 29 29 H 1.09004 * 117.49744 * 145.01903 * 18 17 7 30 30 H 1.09006 * 117.49587 * 214.98149 * 19 17 7 31 31 H 1.08997 * 117.50053 * 359.97339 * 19 17 7 32 32 H 1.09008 * 115.56055 * 325.68508 * 20 2 1 33 33 H 1.09002 * 117.49833 * 359.97438 * 21 20 2 34 34 H 1.09002 * 117.49953 * 144.99738 * 21 20 2 35 35 H 1.09000 * 117.49996 * 107.50493 * 22 21 20 36 36 H 1.08999 * 117.49664 * 252.51862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7270 -1.6928 1.1196 6 8 1.7081 -0.2519 2.4496 7 6 2.2268 -0.9864 3.5896 8 1 3.1796 -1.4443 3.3237 9 6 2.4289 -0.0416 4.7461 10 1 2.1909 1.0060 4.6356 11 6 2.9167 -0.5149 5.9458 12 7 3.2061 -1.7907 6.0805 13 14 3.1665 0.6560 7.3796 14 1 1.9251 0.7154 8.1923 15 1 4.2884 0.1725 8.2240 16 1 3.4848 2.0112 6.8624 17 6 1.2310 -2.0768 3.9898 18 6 1.7682 -3.5006 4.1478 19 6 0.8921 -3.1419 2.9450 20 6 2.0399 -0.7211 -1.2493 21 6 3.5550 -0.8274 -1.4346 22 6 2.7419 0.1229 -2.3160 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 3.5489 -2.1237 6.9247 27 1 0.4345 -1.7616 4.6639 28 1 2.8310 -3.6606 3.9663 29 1 1.3249 -4.1223 4.9257 30 1 -0.1273 -3.5278 2.9320 31 1 1.3782 -3.0656 1.9724 32 1 1.4309 -1.5583 -1.5906 33 1 4.1883 -0.3832 -0.6668 34 1 3.9430 -1.7349 -1.8974 35 1 2.8404 1.1920 -2.1278 36 1 2.5947 -0.1595 -3.3584 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123370602.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:21 Heat of formation + Delta-G solvation = -48.323990 kcal Electronic energy + Delta-G solvation = -17574.302767 eV Core-core repulsion = 14832.004751 eV Total energy + Delta-G solvation = -2742.298016 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.84413 -37.53010 -35.98989 -34.75999 -32.65580 -32.16843 -27.80700 -24.71280 -23.27730 -22.20575 -21.69182 -21.19313 -19.64562 -18.97878 -16.98457 -16.43703 -15.95843 -15.02350 -14.92695 -14.58895 -14.26620 -13.86118 -13.16089 -12.60546 -12.41696 -12.09941 -11.67303 -11.44269 -11.40945 -11.24665 -11.04077 -10.97553 -10.80669 -10.38433 -10.26857 -10.24210 -9.92477 -9.78962 -9.45490 -9.23175 -8.97769 -8.61292 -8.39620 -6.13017 -4.20720 3.09641 3.26094 3.31743 3.34557 3.53608 4.15519 4.39205 4.67471 4.98274 5.04186 5.13782 5.19126 5.24945 5.43663 5.59635 5.68751 5.76191 5.97295 5.99339 6.07860 6.10594 6.19385 6.22100 6.28746 6.40848 6.45603 6.59655 6.75005 7.03680 7.20128 7.32263 7.45690 7.67068 7.90216 8.17088 8.71473 8.95805 9.43967 10.93711 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.029744 B = 0.007041 C = 0.006483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.128836 B = 3975.971483 C = 4318.126188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.057 4.057 3 H 0.100 0.900 4 C 0.455 3.545 5 O -0.512 6.512 6 O -0.353 6.353 7 C 0.249 3.751 8 H 0.047 0.953 9 C -0.527 4.527 10 H 0.068 0.932 11 C 0.068 3.932 12 N -0.873 5.873 13 Si 0.906 3.094 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.272 1.272 17 C -0.113 4.113 18 C -0.124 4.124 19 C -0.229 4.229 20 C -0.137 4.137 21 C -0.157 4.157 22 C -0.184 4.184 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.263 0.737 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.637 2.164 -11.434 12.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.076 4.076 3 H 0.118 0.882 4 C 0.298 3.702 5 O -0.402 6.402 6 O -0.269 6.269 7 C 0.196 3.804 8 H 0.065 0.935 9 C -0.565 4.565 10 H 0.086 0.914 11 C -0.136 4.136 12 N -0.509 5.509 13 Si 0.733 3.267 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.197 1.197 17 C -0.132 4.132 18 C -0.161 4.161 19 C -0.266 4.266 20 C -0.155 4.155 21 C -0.194 4.194 22 C -0.221 4.221 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.349 1.725 -11.264 11.877 hybrid contribution 0.173 0.301 1.004 1.062 sum -3.176 2.026 -10.260 10.929 Atomic orbital electron populations 1.21686 0.92204 1.02752 1.02865 1.20554 0.97887 0.99756 0.89430 0.88207 1.23282 0.77795 0.83071 0.86046 1.90560 1.35970 1.26037 1.87627 1.86474 1.69253 1.56251 1.14944 1.20159 0.91691 0.89083 0.79435 0.93538 1.20922 1.45182 0.95052 0.95368 0.91386 1.24883 0.94829 0.95465 0.98398 1.70054 1.42493 1.12743 1.25638 0.86374 0.77840 0.80849 0.81639 1.20461 1.21061 1.19711 1.22581 1.01037 0.90485 0.99128 1.22357 0.98611 0.98203 0.96969 1.23279 0.99501 1.07859 0.95940 1.22005 0.96241 1.01495 0.95757 1.22801 0.93700 1.00950 1.01926 1.23093 1.05351 0.97610 0.96004 0.91704 0.92239 0.90925 0.92676 0.89471 0.89393 0.90869 0.91170 0.88757 0.87520 0.88804 0.88881 0.88885 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.11 37.16 0.34 -1.46 16 2 C -0.06 -0.86 2.98 -91.78 -0.27 -1.14 16 3 H 0.10 1.39 7.90 -51.93 -0.41 0.98 16 4 C 0.46 9.35 6.35 36.00 0.23 9.58 16 5 O -0.51 -11.62 12.13 -18.75 -0.23 -11.85 16 6 O -0.35 -8.34 9.75 -39.26 -0.38 -8.72 16 7 C 0.25 6.59 2.25 -27.89 -0.06 6.53 16 8 H 0.05 1.37 6.91 -51.93 -0.36 1.01 16 9 C -0.53 -14.73 8.88 -34.44 -0.31 -15.04 16 10 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 11 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 12 N -0.87 -24.40 11.43 55.43 0.63 -23.76 16 13 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 17 C -0.11 -2.81 4.47 -90.62 -0.41 -3.21 16 18 C -0.12 -2.91 9.04 -26.70 -0.24 -3.15 16 19 C -0.23 -5.00 9.80 -26.69 -0.26 -5.26 16 20 C -0.14 -1.86 4.73 -90.59 -0.43 -2.28 16 21 C -0.16 -2.16 8.97 -26.73 -0.24 -2.40 16 22 C -0.18 -2.04 10.18 -26.69 -0.27 -2.31 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.09 2.23 8.11 -51.93 -0.42 1.80 16 28 H 0.09 2.20 8.05 -51.93 -0.42 1.79 16 29 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.09 2.13 5.37 -51.93 -0.28 1.85 16 32 H 0.11 1.39 8.11 -51.92 -0.42 0.97 16 33 H 0.09 1.45 8.10 -51.93 -0.42 1.02 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.09 0.96 8.05 -51.93 -0.42 0.54 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 299.93 15.07 4.52 4.52 Total: -1.00 -29.36 299.93 -8.15 -37.50 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.65 Total: 4.67 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -2.02 Total: -18.37 kcal Atomic # 7 Polarization: -24.40 SS G_CDS: 0.63 Total: -23.76 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.61 Total: -20.57 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.36 -8.15 -37.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123370602.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.820 kcal (2) G-P(sol) polarization free energy of solvation -29.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds