Wall clock time and date at job start Thu Apr 9 2020 12:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46791 * 2 1 4 4 C 1.50697 * 109.47319 * 120.00047 * 2 1 3 5 5 O 1.20826 * 120.00119 * 120.00014 * 4 2 1 6 6 O 1.34232 * 120.00114 * 300.00205 * 4 2 1 7 7 C 1.45199 * 117.00097 * 179.97438 * 6 4 2 8 8 H 1.09005 * 109.46686 * 30.00098 * 7 6 4 9 9 C 1.50692 * 109.46935 * 149.99741 * 7 6 4 10 10 H 1.07995 * 120.00604 * 0.02562 * 9 7 6 11 11 C 1.37883 * 120.00055 * 179.97438 * 9 7 6 12 12 N 1.31514 * 119.99534 * 0.02562 * 11 9 7 13 13 Si 1.86794 * 120.00263 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46998 * 90.00263 * 13 11 9 15 15 H 1.48505 * 109.47400 * 210.00319 * 13 11 9 16 16 H 1.48502 * 109.47289 * 330.00366 * 13 11 9 17 17 C 1.52997 * 109.47349 * 270.00168 * 7 6 4 18 18 C 1.52995 * 117.49959 * 128.74527 * 17 7 6 19 19 C 1.53003 * 117.49794 * 60.08665 * 17 7 6 20 20 C 1.52996 * 109.47138 * 240.00475 * 2 1 3 21 21 C 1.53000 * 117.49997 * 179.97438 * 20 2 1 22 22 C 1.53002 * 60.02940 * 252.49592 * 21 20 2 23 23 H 1.09001 * 109.47494 * 59.99823 * 1 2 3 24 24 H 1.09004 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47356 * 299.99703 * 1 2 3 26 26 H 0.97006 * 119.99647 * 180.02562 * 12 11 9 27 27 H 1.09001 * 115.54577 * 274.41883 * 17 7 6 28 28 H 1.09004 * 117.49999 * 359.97438 * 18 17 7 29 29 H 1.09004 * 117.49744 * 145.01903 * 18 17 7 30 30 H 1.09006 * 117.49587 * 214.98149 * 19 17 7 31 31 H 1.08997 * 117.50053 * 359.97339 * 19 17 7 32 32 H 1.09008 * 115.56055 * 325.68508 * 20 2 1 33 33 H 1.09002 * 117.49833 * 359.97438 * 21 20 2 34 34 H 1.09002 * 117.49953 * 144.99738 * 21 20 2 35 35 H 1.09000 * 117.49996 * 107.50493 * 22 21 20 36 36 H 1.08999 * 117.49664 * 252.51862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7270 -1.6928 1.1196 6 8 1.7081 -0.2519 2.4496 7 6 2.2268 -0.9864 3.5896 8 1 3.1796 -1.4443 3.3237 9 6 2.4289 -0.0416 4.7461 10 1 2.1909 1.0060 4.6356 11 6 2.9167 -0.5149 5.9458 12 7 3.2061 -1.7907 6.0805 13 14 3.1665 0.6560 7.3796 14 1 1.9251 0.7154 8.1923 15 1 4.2884 0.1725 8.2240 16 1 3.4848 2.0112 6.8624 17 6 1.2310 -2.0768 3.9898 18 6 1.7682 -3.5006 4.1478 19 6 0.8921 -3.1419 2.9450 20 6 2.0399 -0.7211 -1.2493 21 6 3.5550 -0.8274 -1.4346 22 6 2.7419 0.1229 -2.3160 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 3.5489 -2.1237 6.9247 27 1 0.4345 -1.7616 4.6639 28 1 2.8310 -3.6606 3.9663 29 1 1.3249 -4.1223 4.9257 30 1 -0.1273 -3.5278 2.9320 31 1 1.3782 -3.0656 1.9724 32 1 1.4309 -1.5583 -1.5906 33 1 4.1883 -0.3832 -0.6668 34 1 3.9430 -1.7349 -1.8974 35 1 2.8404 1.1920 -2.1278 36 1 2.5947 -0.1595 -3.3584 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123370602.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:20 Heat of formation + Delta-G solvation = -63.053559 kcal Electronic energy + Delta-G solvation = -17574.941489 eV Core-core repulsion = 14832.004751 eV Total energy + Delta-G solvation = -2742.936738 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.50475 -38.93888 -37.64208 -36.57970 -34.72094 -33.36814 -29.83934 -26.07487 -25.12096 -23.30875 -23.10481 -22.97882 -21.33488 -20.62840 -18.84674 -18.26805 -17.54745 -16.83757 -16.40580 -16.09441 -15.70274 -15.49499 -14.81725 -14.42041 -13.69918 -13.49985 -13.22659 -13.09391 -12.97563 -12.79605 -12.72021 -12.36417 -12.26679 -12.17819 -11.98618 -11.76686 -11.42554 -11.30104 -10.99959 -10.97605 -10.80204 -10.59251 -10.41847 -8.22120 -6.39162 1.41349 1.42641 1.46478 1.53471 2.00843 2.41879 3.01382 3.05392 3.27540 3.58346 3.87037 3.97771 4.10812 4.17983 4.27134 4.30994 4.37134 4.44599 4.54825 4.72915 4.79510 4.82637 4.95021 5.02724 5.06611 5.10949 5.21167 5.26979 5.28309 5.35382 5.40218 5.49170 5.58397 5.88329 6.20337 6.65329 7.09553 7.32090 8.84141 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.029744 B = 0.007041 C = 0.006483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.128836 B = 3975.971483 C = 4318.126188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.050 4.050 3 H 0.114 0.886 4 C 0.446 3.554 5 O -0.539 6.539 6 O -0.364 6.364 7 C 0.255 3.745 8 H 0.004 0.996 9 C -0.557 4.557 10 H 0.062 0.938 11 C 0.025 3.975 12 N -0.896 5.896 13 Si 0.974 3.026 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.268 1.268 17 C -0.130 4.130 18 C -0.124 4.124 19 C -0.197 4.197 20 C -0.149 4.149 21 C -0.183 4.183 22 C -0.145 4.145 23 H 0.101 0.899 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.267 0.733 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.876 3.047 -12.497 13.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.069 4.069 3 H 0.132 0.868 4 C 0.291 3.709 5 O -0.429 6.429 6 O -0.280 6.280 7 C 0.202 3.798 8 H 0.021 0.979 9 C -0.594 4.594 10 H 0.081 0.919 11 C -0.178 4.178 12 N -0.532 5.532 13 Si 0.798 3.202 14 H -0.194 1.194 15 H -0.204 1.204 16 H -0.193 1.193 17 C -0.149 4.149 18 C -0.162 4.162 19 C -0.234 4.234 20 C -0.167 4.167 21 C -0.220 4.220 22 C -0.182 4.182 23 H 0.120 0.880 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.104 0.896 32 H 0.131 0.869 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.596 2.609 -12.349 13.433 hybrid contribution 0.611 0.003 1.269 1.409 sum -3.985 2.612 -11.080 12.061 Atomic orbital electron populations 1.21700 0.90167 1.02961 1.04159 1.20733 0.99440 0.99773 0.86953 0.86783 1.24522 0.77028 0.83054 0.86324 1.90542 1.37102 1.27501 1.87787 1.86471 1.69466 1.56371 1.15722 1.19769 0.90485 0.89408 0.80156 0.97854 1.21201 1.46475 0.95152 0.96610 0.91938 1.25730 0.94049 0.97176 1.00796 1.70169 1.42387 1.14265 1.26343 0.85321 0.78110 0.78676 0.78102 1.19428 1.20411 1.19280 1.22387 1.00951 0.90724 1.00861 1.22275 0.97672 0.97678 0.98541 1.23256 1.00631 1.04978 0.94547 1.22063 0.95822 1.02759 0.96104 1.22778 0.93768 1.02438 1.02997 1.23201 1.00986 0.97604 0.96377 0.88004 0.92591 0.91993 0.92421 0.90350 0.91866 0.89308 0.87878 0.89590 0.86873 0.91397 0.88631 0.87605 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.11 71.98 0.66 -2.50 16 2 C -0.05 -1.45 2.98 -11.54 -0.03 -1.49 16 3 H 0.11 2.98 7.90 -2.39 -0.02 2.96 16 4 C 0.45 18.65 6.35 71.24 0.45 19.11 16 5 O -0.54 -25.31 12.13 21.96 0.27 -25.04 16 6 O -0.36 -17.68 9.75 -51.43 -0.50 -18.18 16 7 C 0.26 14.04 2.25 29.84 0.07 14.11 16 8 H 0.00 0.23 6.91 -2.38 -0.02 0.22 16 9 C -0.56 -32.01 8.88 25.60 0.23 -31.78 16 10 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 11 C 0.02 1.35 5.30 84.66 0.45 1.80 16 12 N -0.90 -51.01 11.43 21.45 0.25 -50.76 16 13 Si 0.97 43.31 29.54 68.60 2.03 45.33 16 14 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 15 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 17 C -0.13 -6.59 4.47 -10.80 -0.05 -6.63 16 18 C -0.12 -5.92 9.04 30.62 0.28 -5.64 16 19 C -0.20 -8.54 9.80 30.62 0.30 -8.24 16 20 C -0.15 -3.77 4.73 -10.77 -0.05 -3.83 16 21 C -0.18 -4.93 8.97 30.60 0.27 -4.66 16 22 C -0.15 -2.75 10.18 30.62 0.31 -2.44 16 23 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.05 1.36 8.14 -2.38 -0.02 1.35 16 25 H 0.06 1.61 8.11 -2.38 -0.02 1.59 16 26 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16 27 H 0.08 4.07 8.11 -2.39 -0.02 4.05 16 28 H 0.06 3.30 8.05 -2.39 -0.02 3.28 16 29 H 0.09 3.89 8.14 -2.39 -0.02 3.87 16 30 H 0.10 3.78 8.14 -2.38 -0.02 3.76 16 31 H 0.09 3.90 5.37 -2.39 -0.01 3.89 16 32 H 0.11 2.71 8.11 -2.38 -0.02 2.69 16 33 H 0.07 2.16 8.10 -2.39 -0.02 2.14 16 34 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.11 1.78 8.05 -2.39 -0.02 1.76 16 36 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -65.48 299.93 5.96 -59.51 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 1.05 Total: 21.33 kcal Atomic # 6 Polarization: -35.06 SS G_CDS: 2.88 Total: -32.18 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.25 Total: -50.76 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -0.23 Total: -43.23 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -65.48 5.96 -59.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123370602.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.542 kcal (2) G-P(sol) polarization free energy of solvation -65.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds