Wall clock time and date at job start Thu Apr 9 2020 12:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99962 * 2 1 4 4 H 1.48494 * 109.47166 * 269.99662 * 3 2 1 5 5 H 1.48501 * 109.46982 * 29.99539 * 3 2 1 6 6 H 1.48494 * 109.47221 * 149.99447 * 3 2 1 7 7 C 1.38814 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99684 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00175 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 179.97438 * 11 10 9 13 13 C 1.34779 * 119.99872 * 180.02562 * 12 11 10 14 14 O 1.21278 * 120.00071 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99944 * 180.02562 * 13 12 11 16 16 C 1.52997 * 115.54863 * 180.02562 * 15 13 12 17 17 C 1.52999 * 117.50099 * 34.33104 * 16 15 13 18 18 C 1.52994 * 117.50166 * 325.66949 * 16 15 13 19 19 C 1.52999 * 117.49751 * 34.33100 * 15 13 12 20 20 C 1.53003 * 117.49683 * 325.67050 * 15 13 12 21 21 H 0.96996 * 119.99724 * 0.02562 * 1 2 3 22 22 H 0.97005 * 119.99550 * 0.02562 * 9 7 2 23 23 H 1.09001 * 109.46813 * 60.00266 * 10 9 7 24 24 H 1.08992 * 109.47397 * 300.00328 * 10 9 7 25 25 H 1.09002 * 109.47398 * 300.00326 * 11 10 9 26 26 H 1.09001 * 109.47194 * 60.00507 * 11 10 9 27 27 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 28 28 H 1.09000 * 115.54919 * 180.02562 * 16 15 13 29 29 H 1.09005 * 117.49507 * 359.97438 * 17 16 15 30 30 H 1.08998 * 117.50265 * 145.01700 * 17 16 15 31 31 H 1.08999 * 117.50057 * 214.98372 * 18 16 15 32 32 H 1.09006 * 117.49721 * 359.97438 * 18 16 15 33 33 H 1.08997 * 117.50134 * 359.97438 * 19 15 13 34 34 H 1.09005 * 117.49669 * 145.02220 * 19 15 13 35 35 H 1.09000 * 117.49553 * 214.97571 * 20 15 13 36 36 H 1.08993 * 117.50274 * 359.97438 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0011 10 6 4.1122 -2.4709 0.0011 11 6 5.6164 -2.1912 0.0011 12 7 6.3489 -3.4600 0.0017 13 6 7.6967 -3.4599 0.0023 14 8 8.3031 -2.4096 0.0019 15 6 8.4502 -4.7650 0.0024 16 6 9.9756 -4.6463 0.0037 17 6 10.5923 -3.4745 0.7702 18 6 10.5936 -3.4738 -0.7605 19 6 7.8332 -5.9370 -0.7636 20 6 7.8325 -5.9374 0.7672 21 1 -0.4849 0.8400 -0.0004 22 1 3.8647 -0.3620 0.0014 23 1 3.8492 -3.0422 -0.8892 24 1 3.8485 -3.0427 0.8907 25 1 5.8798 -1.6196 -0.8889 26 1 5.8797 -1.6197 0.8911 27 1 5.8640 -4.3000 0.0016 28 1 10.5206 -5.5902 0.0033 29 1 9.9112 -2.7879 1.2731 30 1 11.5432 -3.6474 1.2741 31 1 11.5454 -3.6463 -1.2630 32 1 9.9135 -2.7872 -1.2647 33 1 6.8821 -5.7642 -1.2672 34 1 8.5141 -6.6237 -1.2666 35 1 8.5128 -6.6243 1.2705 36 1 6.8813 -5.7646 1.2707 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130017114.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:39 Heat of formation + Delta-G solvation = 30.412142 kcal Electronic energy + Delta-G solvation = -16660.377461 eV Core-core repulsion = 13953.786451 eV Total energy + Delta-G solvation = -2706.591010 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.56922 -37.43038 -36.18210 -35.36077 -33.66787 -31.39249 -28.30721 -25.03593 -23.56474 -22.95389 -22.11577 -21.83589 -21.45711 -19.51342 -17.76701 -16.85070 -16.23053 -15.45622 -15.39046 -14.83293 -14.33266 -13.90960 -13.84134 -13.70101 -13.25552 -12.65499 -12.47836 -12.00048 -11.76732 -11.57770 -11.52840 -11.18846 -11.06624 -10.95606 -10.86198 -10.24625 -10.18392 -9.66289 -9.60734 -9.56096 -9.05021 -8.90575 -7.33074 -5.82314 -3.19927 2.39167 3.10776 3.36774 3.40451 3.44529 3.47205 4.01650 4.18361 4.31174 4.55543 4.68396 4.77808 4.98333 5.10927 5.18132 5.29615 5.29861 5.42020 5.53705 5.58391 5.61074 5.62724 5.71333 5.73809 5.85318 5.92467 6.18094 6.35014 6.39750 6.55020 6.59792 7.50849 7.90867 8.23271 8.35736 9.13261 9.85592 10.03821 11.35527 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041689 B = 0.004609 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.484101 B = 6073.680148 C = 6588.233934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.091 0.909 9 N -0.752 5.752 10 C 0.149 3.851 11 C 0.108 3.892 12 N -0.722 5.722 13 C 0.546 3.454 14 O -0.532 6.532 15 C -0.124 4.124 16 C -0.117 4.117 17 C -0.168 4.168 18 C -0.168 4.168 19 C -0.156 4.156 20 C -0.156 4.156 21 H 0.261 0.739 22 H 0.363 0.637 23 H 0.033 0.967 24 H 0.032 0.968 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.399 0.601 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.535 -12.901 0.002 23.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.188 4.188 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.380 4.380 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.021 3.979 11 C -0.015 4.015 12 N -0.374 5.374 13 C 0.332 3.668 14 O -0.409 6.409 15 C -0.128 4.128 16 C -0.136 4.136 17 C -0.205 4.205 18 C -0.205 4.205 19 C -0.193 4.193 20 C -0.193 4.193 21 H 0.071 0.929 22 H 0.196 0.804 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.233 0.767 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 19.700 -12.194 0.004 23.169 hybrid contribution 0.252 0.777 0.009 0.817 sum 19.953 -11.417 0.013 22.988 Atomic orbital electron populations 1.69700 1.05118 1.26021 1.57042 1.24669 0.95254 0.97308 1.01591 0.86546 0.79282 0.84776 0.77954 1.20885 1.21541 1.20199 1.19008 0.80211 0.94888 1.43853 0.89092 1.42529 1.04158 1.01825 1.91351 1.20726 0.87657 0.90286 0.99255 1.21601 0.92432 0.85013 1.02474 1.45877 1.06108 1.10181 1.75195 1.19424 0.81907 0.89536 0.75933 1.90648 1.67646 1.33093 1.49547 1.20976 0.94142 0.88955 1.08698 1.21367 0.89948 0.94272 1.07982 1.23051 1.01770 1.00645 0.94994 1.23051 1.01754 1.00647 0.95015 1.23130 1.02708 0.98838 0.94604 1.23129 1.02711 0.98843 0.94620 0.92908 0.80372 0.94936 0.94980 0.91295 0.91316 0.76650 0.87399 0.87367 0.89658 0.89666 0.87360 0.87887 0.87559 0.87566 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.16 13.97 55.49 0.78 -28.38 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 22.19 27.74 -169.99 -4.71 17.48 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 7 C -0.25 -7.06 10.47 -15.06 -0.16 -7.22 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 9 N -0.75 -17.88 5.41 -59.91 -0.32 -18.20 16 10 C 0.15 2.76 6.37 -4.04 -0.03 2.73 16 11 C 0.11 1.74 5.79 -4.04 -0.02 1.72 16 12 N -0.72 -9.39 5.36 -60.29 -0.32 -9.71 16 13 C 0.55 7.50 7.24 -10.98 -0.08 7.42 16 14 O -0.53 -9.00 11.83 5.56 0.07 -8.93 16 15 C -0.12 -1.29 2.46 -155.66 -0.38 -1.67 16 16 C -0.12 -1.20 5.84 -90.62 -0.53 -1.73 16 17 C -0.17 -1.92 9.66 -26.70 -0.26 -2.18 16 18 C -0.17 -1.92 9.66 -26.70 -0.26 -2.18 16 19 C -0.16 -1.20 9.60 -26.69 -0.26 -1.46 16 20 C -0.16 -1.21 9.60 -26.69 -0.26 -1.46 16 21 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 22 H 0.36 8.51 5.53 -40.82 -0.23 8.28 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.40 4.17 6.66 -40.82 -0.27 3.90 16 28 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.11 1.51 6.28 -51.93 -0.33 1.18 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.11 1.51 6.28 -51.93 -0.33 1.18 16 33 H 0.10 0.76 7.55 -51.93 -0.39 0.37 16 34 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.76 7.55 -51.93 -0.39 0.37 16 LS Contribution 296.72 15.07 4.47 4.47 Total: -1.00 -32.61 296.72 -7.70 -40.31 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -5.33 Total: 8.86 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.32 Total: -5.89 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.13 Total: -56.30 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.07 Total: -8.93 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.48 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.61 -7.70 -40.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130017114.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.722 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds