Wall clock time and date at job start Thu Apr 9 2020 12:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99962 * 2 1 4 4 H 1.48494 * 109.47166 * 269.99662 * 3 2 1 5 5 H 1.48501 * 109.46982 * 29.99539 * 3 2 1 6 6 H 1.48494 * 109.47221 * 149.99447 * 3 2 1 7 7 C 1.38814 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99684 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00175 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 179.97438 * 11 10 9 13 13 C 1.34779 * 119.99872 * 180.02562 * 12 11 10 14 14 O 1.21278 * 120.00071 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99944 * 180.02562 * 13 12 11 16 16 C 1.52997 * 115.54863 * 180.02562 * 15 13 12 17 17 C 1.52999 * 117.50099 * 34.33104 * 16 15 13 18 18 C 1.52994 * 117.50166 * 325.66949 * 16 15 13 19 19 C 1.52999 * 117.49751 * 34.33100 * 15 13 12 20 20 C 1.53003 * 117.49683 * 325.67050 * 15 13 12 21 21 H 0.96996 * 119.99724 * 0.02562 * 1 2 3 22 22 H 0.97005 * 119.99550 * 0.02562 * 9 7 2 23 23 H 1.09001 * 109.46813 * 60.00266 * 10 9 7 24 24 H 1.08992 * 109.47397 * 300.00328 * 10 9 7 25 25 H 1.09002 * 109.47398 * 300.00326 * 11 10 9 26 26 H 1.09001 * 109.47194 * 60.00507 * 11 10 9 27 27 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 28 28 H 1.09000 * 115.54919 * 180.02562 * 16 15 13 29 29 H 1.09005 * 117.49507 * 359.97438 * 17 16 15 30 30 H 1.08998 * 117.50265 * 145.01700 * 17 16 15 31 31 H 1.08999 * 117.50057 * 214.98372 * 18 16 15 32 32 H 1.09006 * 117.49721 * 359.97438 * 18 16 15 33 33 H 1.08997 * 117.50134 * 359.97438 * 19 15 13 34 34 H 1.09005 * 117.49669 * 145.02220 * 19 15 13 35 35 H 1.09000 * 117.49553 * 214.97571 * 20 15 13 36 36 H 1.08993 * 117.50274 * 359.97438 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0011 10 6 4.1122 -2.4709 0.0011 11 6 5.6164 -2.1912 0.0011 12 7 6.3489 -3.4600 0.0017 13 6 7.6967 -3.4599 0.0023 14 8 8.3031 -2.4096 0.0019 15 6 8.4502 -4.7650 0.0024 16 6 9.9756 -4.6463 0.0037 17 6 10.5923 -3.4745 0.7702 18 6 10.5936 -3.4738 -0.7605 19 6 7.8332 -5.9370 -0.7636 20 6 7.8325 -5.9374 0.7672 21 1 -0.4849 0.8400 -0.0004 22 1 3.8647 -0.3620 0.0014 23 1 3.8492 -3.0422 -0.8892 24 1 3.8485 -3.0427 0.8907 25 1 5.8798 -1.6196 -0.8889 26 1 5.8797 -1.6197 0.8911 27 1 5.8640 -4.3000 0.0016 28 1 10.5206 -5.5902 0.0033 29 1 9.9112 -2.7879 1.2731 30 1 11.5432 -3.6474 1.2741 31 1 11.5454 -3.6463 -1.2630 32 1 9.9135 -2.7872 -1.2647 33 1 6.8821 -5.7642 -1.2672 34 1 8.5141 -6.6237 -1.2666 35 1 8.5128 -6.6243 1.2705 36 1 6.8813 -5.7646 1.2707 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130017114.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:39 Heat of formation + Delta-G solvation = 7.965288 kcal Electronic energy + Delta-G solvation = -16661.350829 eV Core-core repulsion = 13953.786451 eV Total energy + Delta-G solvation = -2707.564379 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.53013 -38.42493 -37.42902 -36.58459 -35.12143 -33.38081 -29.91253 -26.15532 -25.04106 -23.61602 -23.37235 -22.89352 -22.66171 -20.60987 -19.76946 -17.76916 -17.32002 -16.65326 -16.63482 -16.26477 -15.62493 -15.54796 -15.22102 -14.84205 -14.54964 -14.12758 -13.45985 -13.31593 -13.29450 -12.78339 -12.63051 -12.56650 -12.33956 -12.11979 -12.09754 -11.84864 -11.72551 -11.09353 -11.05695 -10.58939 -10.37418 -10.14938 -9.39020 -8.07172 -5.42734 1.37693 1.39210 1.43693 1.46401 2.02212 2.44898 2.67559 3.24685 3.28276 3.45306 3.51154 3.74193 3.83718 3.99340 4.06754 4.15408 4.24766 4.37212 4.38156 4.50178 4.75449 4.86211 4.87216 4.94603 5.02261 5.05309 5.05540 5.19954 5.29371 5.43375 5.43623 5.70250 6.15818 6.49007 7.00985 7.19846 7.75299 7.92950 9.13645 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041689 B = 0.004609 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.484101 B = 6073.680148 C = 6588.233934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.057 4.057 3 Si 0.951 3.049 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.256 1.256 7 C -0.240 4.240 8 H 0.064 0.936 9 N -0.759 5.759 10 C 0.151 3.849 11 C 0.125 3.875 12 N -0.714 5.714 13 C 0.539 3.461 14 O -0.570 6.570 15 C -0.151 4.151 16 C -0.101 4.101 17 C -0.178 4.178 18 C -0.179 4.179 19 C -0.140 4.140 20 C -0.140 4.140 21 H 0.260 0.740 22 H 0.366 0.634 23 H 0.042 0.958 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.413 0.587 28 H 0.139 0.861 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.532 -14.556 0.014 25.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.249 4.249 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.181 1.181 7 C -0.370 4.370 8 H 0.082 0.918 9 N -0.405 5.405 10 C 0.024 3.976 11 C 0.000 4.000 12 N -0.366 5.366 13 C 0.327 3.673 14 O -0.450 6.450 15 C -0.154 4.154 16 C -0.119 4.119 17 C -0.215 4.215 18 C -0.215 4.215 19 C -0.177 4.177 20 C -0.177 4.177 21 H 0.069 0.931 22 H 0.199 0.801 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.250 0.750 28 H 0.156 0.844 29 H 0.095 0.905 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.095 0.905 33 H 0.124 0.876 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 21.734 -13.906 0.017 25.802 hybrid contribution -0.377 1.187 0.002 1.246 sum 21.356 -12.719 0.019 24.857 Atomic orbital electron populations 1.69864 1.07005 1.26867 1.59177 1.25463 0.96086 1.01136 1.02241 0.85467 0.78597 0.79874 0.78218 1.20316 1.21884 1.18056 1.19015 0.82155 0.93842 1.42029 0.91785 1.42554 1.02813 1.03885 1.91274 1.20822 0.88673 0.88275 0.99797 1.21200 0.90942 0.86297 1.01560 1.45717 1.06120 1.09665 1.75134 1.20121 0.81779 0.90589 0.74778 1.90642 1.68329 1.34895 1.51130 1.20959 0.93992 0.88017 1.12477 1.21549 0.90037 0.94709 1.05587 1.22982 1.02274 1.01412 0.94870 1.22982 1.02264 1.01412 0.94882 1.23288 1.02791 0.96709 0.94897 1.23287 1.02789 0.96720 0.94922 0.93120 0.80076 0.94039 0.94137 0.92226 0.92370 0.74988 0.84362 0.90514 0.87750 0.87757 0.90497 0.87617 0.85518 0.85529 0.87628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.40 13.97 21.65 0.30 -62.10 16 2 C -0.06 -3.36 5.50 84.86 0.47 -2.90 16 3 Si 0.95 45.79 27.74 68.60 1.90 47.70 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.26 -11.32 6.52 99.48 0.65 -10.67 16 7 C -0.24 -13.60 10.47 84.03 0.88 -12.72 16 8 H 0.06 3.91 8.06 -2.91 -0.02 3.88 16 9 N -0.76 -35.41 5.41 -343.46 -1.86 -37.27 16 10 C 0.15 5.42 6.37 86.38 0.55 5.97 16 11 C 0.12 3.90 5.79 86.38 0.50 4.40 16 12 N -0.71 -17.63 5.36 -463.05 -2.48 -20.11 16 13 C 0.54 14.37 7.24 87.66 0.63 15.01 16 14 O -0.57 -19.63 11.83 -3.02 -0.04 -19.67 16 15 C -0.15 -2.78 2.46 -52.93 -0.13 -2.91 16 16 C -0.10 -1.81 5.84 -10.80 -0.06 -1.88 16 17 C -0.18 -3.94 9.66 30.62 0.30 -3.64 16 18 C -0.18 -3.93 9.66 30.62 0.30 -3.64 16 19 C -0.14 -1.65 9.60 30.62 0.29 -1.35 16 20 C -0.14 -1.65 9.60 30.62 0.29 -1.36 16 21 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 22 H 0.37 16.62 5.53 -92.70 -0.51 16.11 16 23 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.41 7.74 6.66 -92.71 -0.62 7.12 16 28 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 2.20 6.28 -2.38 -0.01 2.18 16 30 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.08 2.20 6.28 -2.38 -0.01 2.19 16 33 H 0.11 1.21 7.55 -2.39 -0.02 1.19 16 34 H 0.13 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.11 1.21 7.55 -2.39 -0.02 1.19 16 Total: -1.00 -71.78 296.72 1.75 -70.03 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: -0.10 Total: 26.43 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 4.02 Total: -5.02 kcal Atomic # 7 Polarization: -115.44 SS G_CDS: -4.03 Total: -119.47 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.04 Total: -19.67 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.90 Total: 47.70 kcal Total: -71.78 1.75 -70.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130017114.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.996 kcal (2) G-P(sol) polarization free energy of solvation -71.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds