Wall clock time and date at job start Thu Apr 9 2020 12:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47553 * 2 1 4 4 H 1.09006 * 109.46673 * 305.66393 * 3 2 1 5 5 C 1.50696 * 109.47544 * 185.65987 * 3 2 1 6 6 H 1.07997 * 120.00205 * 275.00043 * 5 3 2 7 7 C 1.37879 * 119.99848 * 95.00014 * 5 3 2 8 8 N 1.31510 * 119.99937 * 184.83006 * 7 5 3 9 9 Si 1.86801 * 120.00129 * 4.83582 * 7 5 3 10 10 H 1.48495 * 109.47360 * 84.85623 * 9 7 5 11 11 H 1.48503 * 109.47149 * 204.86008 * 9 7 5 12 12 H 1.48498 * 109.46991 * 324.85519 * 9 7 5 13 13 N 1.46504 * 109.47094 * 65.65721 * 3 2 1 14 14 C 1.39145 * 120.00132 * 275.00357 * 13 3 2 15 15 N 1.32366 * 119.71763 * 0.02562 * 14 13 3 16 16 C 1.31977 * 121.64865 * 179.97438 * 15 14 13 17 17 C 1.38035 * 120.89826 * 359.97197 * 16 15 14 18 18 C 1.38858 * 119.34203 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.75580 * 180.02562 * 18 17 16 20 20 C 1.38486 * 118.48857 * 0.27239 * 18 17 16 21 21 F 1.35101 * 120.47159 * 179.70285 * 20 18 17 22 22 H 1.09001 * 109.46818 * 60.00243 * 1 2 3 23 23 H 1.09001 * 109.47172 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46928 * 300.00423 * 1 2 3 25 25 H 1.09003 * 109.47130 * 240.00061 * 2 1 3 26 26 H 1.09007 * 109.47180 * 119.99975 * 2 1 3 27 27 H 0.96999 * 120.00391 * 180.02562 * 8 7 5 28 28 H 0.97002 * 119.99739 * 95.00292 * 13 3 2 29 29 H 1.08003 * 119.55301 * 179.97438 * 16 15 14 30 30 H 1.08000 * 120.32602 * 180.02562 * 17 16 15 31 31 H 1.09002 * 109.47437 * 89.99643 * 19 18 17 32 32 H 1.09004 * 109.47353 * 330.00321 * 19 18 17 33 33 H 1.09000 * 109.47583 * 209.99912 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5963 1.9847 -0.8350 5 6 3.5406 1.4447 -0.1401 6 1 4.1647 1.3335 0.7342 7 6 4.1165 1.5889 -1.3845 8 7 5.4213 1.4960 -1.5200 9 14 3.0434 1.9165 -2.8781 10 1 2.7771 3.3733 -2.9864 11 1 3.7424 1.4487 -4.1020 12 1 1.7578 1.1876 -2.7333 13 7 1.6662 2.0927 1.2585 14 6 0.4108 2.6775 1.3932 15 7 -0.4414 2.6427 0.3810 16 6 -1.6417 3.1846 0.4673 17 6 -2.0547 3.8116 1.6256 18 6 -1.1920 3.8709 2.7120 19 6 -1.6102 4.5470 3.9922 20 6 0.0635 3.2991 2.5905 21 9 0.9370 3.3390 3.6203 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 5.8266 1.5978 -2.3953 28 1 2.2937 2.1155 1.9978 29 1 -2.3098 3.1369 -0.3799 30 1 -3.0391 4.2516 1.6862 31 1 -2.0875 3.8191 4.6484 32 1 -2.3134 5.3488 3.7668 33 1 -0.7325 4.9620 4.4875 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049448.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:22 Heat of formation + Delta-G solvation = -14.713833 kcal Electronic energy + Delta-G solvation = -17159.431091 eV Core-core repulsion = 14327.422967 eV Total energy + Delta-G solvation = -2832.008124 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.43559 -39.76987 -36.43602 -33.48016 -32.49779 -31.71234 -29.14389 -27.67838 -26.87585 -22.87647 -22.75223 -21.62917 -19.61387 -17.91285 -16.93709 -16.80854 -16.04466 -15.60943 -14.91440 -14.42193 -13.87465 -13.77948 -13.46765 -13.25297 -12.81277 -12.69002 -12.42975 -12.32171 -11.91622 -11.84996 -11.56993 -10.94481 -10.81697 -10.66158 -10.05913 -9.87009 -9.56378 -9.20807 -8.98880 -8.92110 -8.65824 -6.97289 -6.23331 -4.26964 1.42482 1.69510 3.25395 3.33172 3.39293 3.86384 4.13312 4.31921 4.60793 4.75839 4.90065 5.12870 5.27142 5.34285 5.53233 5.65315 5.91927 6.02070 6.07861 6.09918 6.18489 6.23904 6.39410 6.64298 6.78240 6.85349 7.00418 7.10038 7.30174 7.44629 7.86261 7.97313 8.42828 8.70726 8.82983 9.38035 10.88558 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.030988 B = 0.007837 C = 0.007296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.351700 B = 3571.741178 C = 3836.788606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.244 3.756 4 H 0.056 0.944 5 C -0.532 4.532 6 H 0.077 0.923 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.257 1.257 13 N -0.686 5.686 14 C 0.400 3.600 15 N -0.519 5.519 16 C 0.145 3.855 17 C -0.240 4.240 18 C -0.035 4.035 19 C -0.112 4.112 20 C -0.049 4.049 21 F -0.141 7.141 22 H 0.055 0.945 23 H 0.028 0.972 24 H 0.045 0.955 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.268 0.732 28 H 0.404 0.596 29 H 0.154 0.846 30 H 0.129 0.871 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.442 3.666 6.122 16.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C 0.142 3.858 4 H 0.074 0.926 5 C -0.570 4.570 6 H 0.095 0.905 7 C -0.123 4.123 8 N -0.525 5.525 9 Si 0.701 3.299 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.181 1.181 13 N -0.312 5.312 14 C 0.159 3.841 15 N -0.238 5.238 16 C -0.014 4.014 17 C -0.264 4.264 18 C -0.043 4.043 19 C -0.169 4.169 20 C -0.077 4.077 21 F -0.120 7.120 22 H 0.074 0.926 23 H 0.047 0.953 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.241 0.759 29 H 0.171 0.829 30 H 0.147 0.853 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.844 3.133 5.063 15.070 hybrid contribution -0.261 0.598 0.377 0.754 sum -14.105 3.731 5.441 15.571 Atomic orbital electron populations 1.21890 0.97497 0.98553 1.01788 1.22079 0.93729 0.99565 1.01070 1.19193 0.95233 0.88974 0.82404 0.92642 1.21041 0.88857 1.51655 0.95470 0.90497 1.24943 0.94898 0.93673 0.98819 1.69885 1.09788 1.48291 1.24510 0.86875 0.81334 0.79558 0.82093 1.19941 1.21283 1.18109 1.45713 1.10324 1.56593 1.18572 1.18703 0.88434 0.89348 0.87626 1.67587 1.04151 1.23426 1.28664 1.22422 0.91572 0.90861 0.96547 1.21403 1.01358 1.09287 0.94394 1.20019 0.91658 0.95650 0.96989 1.20701 1.02156 1.00092 0.93905 1.17839 0.90558 1.12447 0.86846 1.91401 1.68238 1.95491 1.56838 0.92621 0.95340 0.93634 0.92092 0.93271 0.92241 0.75922 0.82920 0.85269 0.90676 0.90923 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.45 37.16 0.31 -2.36 16 2 C -0.13 -2.71 5.59 -26.73 -0.15 -2.86 16 3 C 0.24 5.77 1.90 -69.08 -0.13 5.64 16 4 H 0.06 1.38 4.70 -51.93 -0.24 1.14 16 5 C -0.53 -14.52 9.05 -34.44 -0.31 -14.84 16 6 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 7 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 8 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 9 Si 0.87 21.36 26.99 -169.99 -4.59 16.77 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.26 -6.04 6.82 56.52 0.39 -5.66 16 13 N -0.69 -14.62 5.16 -54.98 -0.28 -14.90 16 14 C 0.40 7.79 6.07 -154.85 -0.94 6.84 16 15 N -0.52 -9.69 6.42 -12.36 -0.08 -9.77 16 16 C 0.15 2.13 11.17 -17.56 -0.20 1.93 16 17 C -0.24 -3.13 9.81 -39.43 -0.39 -3.52 16 18 C -0.03 -0.50 5.92 -104.30 -0.62 -1.12 16 19 C -0.11 -1.20 9.90 36.00 0.36 -0.85 16 20 C -0.05 -0.86 7.29 -39.09 -0.29 -1.14 16 21 F -0.14 -2.45 15.96 2.25 0.04 -2.42 16 22 H 0.05 1.08 7.71 -51.93 -0.40 0.68 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.04 0.87 5.58 -51.93 -0.29 0.58 16 25 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 26 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.40 8.34 8.06 -40.82 -0.33 8.01 16 29 H 0.15 1.74 8.06 -52.48 -0.42 1.32 16 30 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 33 H 0.07 0.78 7.71 -51.93 -0.40 0.38 16 LS Contribution 277.06 15.07 4.18 4.18 Total: -1.00 -29.68 277.06 -6.61 -36.29 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.19 Total: 5.56 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -2.44 Total: -10.08 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.41 Total: -50.29 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.59 Total: 16.77 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.68 -6.61 -36.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049448.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.577 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds