Wall clock time and date at job start Thu Apr 9 2020 12:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47111 * 2 1 4 4 H 1.09010 * 109.47167 * 177.95777 * 3 2 1 5 5 C 1.50702 * 109.47266 * 57.96031 * 3 2 1 6 6 H 1.07994 * 120.00062 * 240.00015 * 5 3 2 7 7 C 1.37880 * 119.99941 * 59.99732 * 5 3 2 8 8 N 1.31514 * 119.99816 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 119.99824 * 180.02562 * 7 5 3 10 10 H 1.48509 * 109.46926 * 90.00050 * 9 7 5 11 11 H 1.48494 * 109.47319 * 209.99957 * 9 7 5 12 12 H 1.48503 * 109.47643 * 330.00135 * 9 7 5 13 13 N 1.46896 * 109.47282 * 297.95590 * 3 2 1 14 14 C 1.46896 * 111.00489 * 273.74809 * 13 3 2 15 15 C 1.50698 * 109.47416 * 175.00238 * 14 13 3 16 16 N 1.31861 * 119.64003 * 89.99811 * 15 14 13 17 17 C 1.31852 * 121.75231 * 179.97438 * 16 15 14 18 18 C 1.38233 * 120.81935 * 0.02562 * 17 16 15 19 19 C 1.38593 * 119.19064 * 359.97438 * 18 17 16 20 20 C 1.38431 * 119.63138 * 269.72701 * 15 14 13 21 21 F 1.35095 * 120.44253 * 359.97438 * 20 15 14 22 22 H 1.09007 * 109.47107 * 174.42758 * 1 2 3 23 23 H 1.08997 * 109.47412 * 54.42731 * 1 2 3 24 24 H 1.08999 * 109.47050 * 294.42178 * 1 2 3 25 25 H 1.09005 * 109.47242 * 120.00482 * 2 1 3 26 26 H 1.09003 * 109.47019 * 239.99859 * 2 1 3 27 27 H 0.97004 * 119.99334 * 180.02562 * 8 7 5 28 28 H 1.00907 * 110.99894 * 149.79220 * 13 3 2 29 29 H 1.09006 * 109.46730 * 294.99737 * 14 13 3 30 30 H 1.08996 * 109.47238 * 54.99200 * 14 13 3 31 31 H 1.08004 * 119.59052 * 179.97438 * 17 16 15 32 32 H 1.08002 * 120.40818 * 180.02562 * 18 17 16 33 33 H 1.07997 * 120.80141 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 3.1294 1.4426 0.0366 5 6 1.4967 2.1673 1.2044 6 1 0.8797 3.0440 1.0741 7 6 1.7875 1.7112 2.4727 8 7 2.5393 0.6438 2.6313 9 14 1.1136 2.6093 3.9655 10 1 -0.2074 2.0383 4.3320 11 1 2.0539 2.4521 5.1040 12 1 0.9584 4.0515 3.6473 13 7 1.5910 2.1205 -1.2233 14 6 2.5284 1.8857 -2.3297 15 6 1.9751 2.4911 -3.5940 16 7 2.2666 3.7400 -3.9007 17 6 1.8058 4.3111 -4.9962 18 6 0.9925 3.6140 -5.8699 19 6 0.6630 2.2987 -5.5832 20 6 1.1711 1.7282 -4.4233 21 9 0.8811 0.4474 -4.1065 22 1 -0.3634 -1.0229 -0.0998 23 1 -0.3634 0.5978 -0.8358 24 1 -0.3633 0.4249 0.9357 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 2.7435 0.3228 3.5236 28 1 1.4616 3.1083 -1.0625 29 1 3.4885 2.3460 -2.0964 30 1 2.6641 0.8133 -2.4695 31 1 2.0664 5.3365 -5.2131 32 1 0.6191 4.0881 -6.7656 33 1 0.0299 1.7297 -6.2478 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152603.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:34 Heat of formation + Delta-G solvation = -15.362923 kcal Electronic energy + Delta-G solvation = -16805.469130 eV Core-core repulsion = 13973.432859 eV Total energy + Delta-G solvation = -2832.036271 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.72215 -39.97099 -36.30582 -33.34196 -32.14156 -31.18495 -29.92244 -26.81547 -24.79814 -23.45231 -23.07388 -21.74054 -18.99153 -17.57472 -17.10740 -16.68798 -15.87767 -15.63578 -14.87218 -14.18054 -13.91263 -13.72353 -13.68063 -13.09080 -12.92019 -12.86379 -12.20276 -12.03287 -11.71156 -11.25369 -10.91065 -10.73514 -10.36702 -10.10676 -9.85192 -9.78226 -9.46627 -9.31344 -8.82263 -8.67729 -8.44642 -7.27074 -5.99660 -4.04719 0.99247 1.12184 3.31778 3.38298 3.41380 3.66400 4.12106 4.41212 4.45752 4.66936 4.78631 4.92483 5.31444 5.40835 5.57626 5.73556 5.77405 5.89534 6.17730 6.23799 6.56638 6.69383 6.76056 6.89719 7.28399 7.30630 7.52451 7.76630 7.81476 7.85881 7.94504 8.26907 8.37929 8.65236 9.03207 9.59614 11.06491 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.036170 B = 0.006176 C = 0.005673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.944693 B = 4532.568988 C = 4934.075230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.102 4.102 3 C 0.217 3.783 4 H 0.003 0.997 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.894 3.106 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.677 5.677 14 C 0.104 3.896 15 C 0.123 3.877 16 N -0.455 5.455 17 C 0.085 3.915 18 C -0.156 4.156 19 C -0.116 4.116 20 C 0.068 3.932 21 F -0.122 7.122 22 H 0.012 0.988 23 H 0.045 0.955 24 H 0.051 0.949 25 H 0.086 0.914 26 H 0.011 0.989 27 H 0.260 0.740 28 H 0.335 0.665 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.159 0.841 32 H 0.140 0.860 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.123 3.502 -15.125 15.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.110 3.890 4 H 0.021 0.979 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.309 5.309 14 C -0.026 4.026 15 C -0.017 4.017 16 N -0.164 5.164 17 C -0.072 4.072 18 C -0.176 4.176 19 C -0.142 4.142 20 C 0.046 3.954 21 F -0.100 7.100 22 H 0.032 0.968 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.104 0.896 26 H 0.029 0.971 27 H 0.070 0.930 28 H 0.153 0.847 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.177 0.823 32 H 0.158 0.842 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.925 3.295 -14.565 15.057 hybrid contribution -0.291 0.296 0.487 0.639 sum -2.216 3.591 -14.078 14.697 Atomic orbital electron populations 1.21426 0.97509 0.97150 1.01466 1.21428 0.95141 0.98083 0.99375 1.19156 0.93505 0.91647 0.84716 0.97910 1.21159 1.31652 1.11961 0.90264 0.92295 1.24870 0.95065 0.95040 0.98815 1.69892 1.37339 1.23136 1.22372 0.86564 0.78760 0.80090 0.82392 1.20656 1.21322 1.19981 1.60733 1.46445 1.16737 1.06992 1.20789 0.94672 0.99585 0.87541 1.21706 0.94020 0.89591 0.96408 1.67620 1.21391 1.09837 1.17586 1.22803 0.94296 1.00266 0.89860 1.21984 0.99882 0.94238 1.01502 1.21635 1.00114 0.96281 0.96214 1.18564 0.99815 0.81096 0.95974 1.91542 1.91503 1.34350 1.92620 0.96839 0.93545 0.92999 0.89580 0.97051 0.92964 0.84726 0.93649 0.89861 0.82331 0.84227 0.83900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 9.46 37.16 0.35 -2.39 16 2 C -0.10 -2.51 5.57 -26.74 -0.15 -2.66 16 3 C 0.22 5.47 2.30 -68.87 -0.16 5.31 16 4 H 0.00 0.09 7.84 -51.92 -0.41 -0.32 16 5 C -0.51 -13.88 7.34 -34.44 -0.25 -14.13 16 6 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 7 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 8 N -0.89 -25.24 11.34 55.43 0.63 -24.61 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.68 -14.78 5.50 -109.23 -0.60 -15.38 16 14 C 0.10 2.00 5.57 -4.98 -0.03 1.97 16 15 C 0.12 2.07 6.34 -82.51 -0.52 1.55 16 16 N -0.46 -7.18 10.27 -9.42 -0.10 -7.28 16 17 C 0.09 1.01 11.18 -17.54 -0.20 0.81 16 18 C -0.16 -1.57 10.11 -39.45 -0.40 -1.97 16 19 C -0.12 -1.36 10.16 -39.21 -0.40 -1.76 16 20 C 0.07 1.04 7.27 -39.27 -0.29 0.76 16 21 F -0.12 -2.05 16.49 2.25 0.04 -2.01 16 22 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16 23 H 0.05 1.05 7.50 -51.93 -0.39 0.67 16 24 H 0.05 1.28 7.37 -51.93 -0.38 0.90 16 25 H 0.09 2.34 6.13 -51.93 -0.32 2.02 16 26 H 0.01 0.25 7.43 -51.93 -0.39 -0.13 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.34 7.39 8.24 -39.29 -0.32 7.07 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.61 6.88 -51.93 -0.36 1.25 16 31 H 0.16 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 282.82 15.07 4.26 4.26 Total: -1.00 -29.26 282.82 -7.14 -36.39 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -4.21 Total: 3.17 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -2.13 Total: -10.87 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: -0.07 Total: -47.27 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.26 -7.14 -36.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152603.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.030 kcal (2) G-P(sol) polarization free energy of solvation -29.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds