Wall clock time and date at job start Thu Apr 9 2020 12:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46707 * 2 1 4 4 H 1.08999 * 109.47259 * 54.81597 * 3 2 1 5 5 C 1.50699 * 109.46577 * 174.81616 * 3 2 1 6 6 H 1.08004 * 119.99796 * 120.00379 * 5 3 2 7 7 C 1.37878 * 120.00363 * 299.99983 * 5 3 2 8 8 N 1.31509 * 119.99768 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00118 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47368 * 89.99666 * 9 7 5 11 11 H 1.48493 * 109.46769 * 210.00012 * 9 7 5 12 12 H 1.48501 * 109.47060 * 329.99605 * 9 7 5 13 13 N 1.46895 * 109.46995 * 294.81564 * 3 2 1 14 14 C 1.46905 * 110.99951 * 153.85398 * 13 3 2 15 15 C 1.50700 * 109.46918 * 175.03578 * 14 13 3 16 16 N 1.31859 * 119.63919 * 90.00300 * 15 14 13 17 17 C 1.31845 * 121.75265 * 179.97438 * 16 15 14 18 18 C 1.38235 * 120.82296 * 359.97438 * 17 16 15 19 19 C 1.38595 * 119.18426 * 0.25397 * 18 17 16 20 20 C 1.38425 * 119.63135 * 270.01552 * 15 14 13 21 21 F 1.35096 * 120.44818 * 0.03222 * 20 15 14 22 22 H 1.09007 * 109.47492 * 66.25958 * 1 2 3 23 23 H 1.09005 * 109.47590 * 186.25382 * 1 2 3 24 24 H 1.09003 * 109.47873 * 306.25903 * 1 2 3 25 25 H 1.08994 * 109.47660 * 239.99879 * 2 1 3 26 26 H 1.09002 * 109.46748 * 119.99528 * 2 1 3 27 27 H 0.97003 * 119.99790 * 179.97438 * 8 7 5 28 28 H 1.00900 * 111.00157 * 29.89596 * 13 3 2 29 29 H 1.09000 * 109.46886 * 55.03434 * 14 13 3 30 30 H 1.09000 * 109.47026 * 295.03202 * 14 13 3 31 31 H 1.08000 * 119.59033 * 180.02562 * 17 16 15 32 32 H 1.07997 * 120.40633 * 179.97438 * 18 17 16 33 33 H 1.07997 * 120.79712 * 179.72768 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6027 1.9825 0.8399 5 6 3.5414 1.4445 0.1284 6 1 4.1490 1.8883 -0.6464 7 6 4.1395 0.8798 1.2349 8 7 3.3996 0.3399 2.1786 9 14 6.0007 0.8828 1.3943 10 1 6.4353 2.1165 2.0973 11 1 6.4329 -0.3074 2.1700 12 1 6.6134 0.8417 0.0422 13 7 1.6550 2.0979 -1.2571 14 6 1.5491 3.5526 -1.0815 15 6 1.2735 4.2006 -2.4138 16 7 0.0275 4.3770 -2.8078 17 6 -0.2613 4.9396 -3.9647 18 6 0.7417 5.3690 -4.8135 19 6 2.0647 5.1972 -4.4377 20 6 2.3311 4.6039 -3.2106 21 9 3.6054 4.4195 -2.8017 22 1 -0.3634 0.4137 -0.9407 23 1 -0.3634 -1.0216 0.1119 24 1 -0.3635 0.6078 0.8286 25 1 1.8934 -0.5138 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 3.8204 -0.0577 2.9569 28 1 0.7942 1.7134 -1.6165 29 1 2.4844 3.9387 -0.6762 30 1 0.7346 3.7771 -0.3928 31 1 -1.2944 5.0673 -4.2525 32 1 0.4975 5.8286 -5.7598 33 1 2.8689 5.5190 -5.0827 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152604.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:35 Heat of formation + Delta-G solvation = -15.275340 kcal Electronic energy + Delta-G solvation = -16763.190950 eV Core-core repulsion = 13931.158477 eV Total energy + Delta-G solvation = -2832.032473 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.61864 -39.93143 -36.34844 -33.24983 -32.09485 -31.47550 -29.98633 -26.87131 -25.06115 -23.38637 -22.71035 -21.47900 -19.54688 -17.45949 -17.05654 -16.26741 -16.16803 -15.57583 -14.76960 -14.53009 -13.89424 -13.80682 -13.43137 -13.16574 -12.99668 -12.58350 -12.33448 -12.14506 -11.66190 -11.29006 -11.03234 -10.79313 -10.59825 -9.93257 -9.89889 -9.75934 -9.61085 -9.39264 -9.06924 -8.66224 -8.31337 -7.25143 -5.93183 -3.96963 1.03572 1.15935 3.35793 3.42042 3.47760 3.69892 4.17760 4.47968 4.49788 4.71526 4.83065 4.96383 5.34525 5.44568 5.60108 5.79721 5.81951 5.93207 6.19563 6.21185 6.28459 6.38245 6.46836 6.75641 6.88757 7.10232 7.19414 7.48753 7.79747 7.94457 7.98669 8.26890 8.41043 8.75599 9.11407 9.67888 11.12339 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.026602 B = 0.007256 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.298483 B = 3857.826310 C = 4730.284779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.220 3.780 4 H 0.005 0.995 5 C -0.493 4.493 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.678 5.678 14 C 0.112 3.888 15 C 0.120 3.880 16 N -0.458 5.458 17 C 0.082 3.918 18 C -0.156 4.156 19 C -0.117 4.117 20 C 0.072 3.928 21 F -0.118 7.118 22 H 0.035 0.965 23 H 0.037 0.963 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.101 0.899 27 H 0.259 0.741 28 H 0.322 0.678 29 H 0.093 0.907 30 H 0.041 0.959 31 H 0.159 0.841 32 H 0.139 0.861 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.700 8.412 -11.163 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C 0.113 3.887 4 H 0.022 0.978 5 C -0.532 4.532 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.310 5.310 14 C -0.018 4.018 15 C -0.020 4.020 16 N -0.167 5.167 17 C -0.075 4.075 18 C -0.176 4.176 19 C -0.144 4.144 20 C 0.049 3.951 21 F -0.096 7.096 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.119 0.881 27 H 0.069 0.931 28 H 0.139 0.861 29 H 0.112 0.888 30 H 0.060 0.940 31 H 0.176 0.824 32 H 0.157 0.843 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.651 8.051 -10.642 14.492 hybrid contribution 1.058 0.309 0.032 1.103 sum -4.593 8.360 -10.609 14.267 Atomic orbital electron populations 1.21885 0.99503 0.99736 0.99667 1.21764 0.91297 1.00137 1.03133 1.19194 0.95563 0.90011 0.83962 0.97759 1.21235 0.91141 1.36343 1.04461 0.91886 1.24950 0.98121 0.95630 0.95814 1.69873 1.34711 1.39472 1.09639 0.86548 0.85827 0.77301 0.78047 1.20870 1.21397 1.19886 1.60728 1.36564 1.00201 1.33554 1.20727 1.01547 0.90884 0.88640 1.21777 0.87133 0.95310 0.97755 1.67610 1.20505 1.12338 1.16223 1.22775 1.00019 0.94949 0.89758 1.21970 0.92418 1.01743 1.01461 1.21649 0.98459 0.99046 0.95232 1.18580 0.80616 1.01055 0.94807 1.91571 1.35090 1.92862 1.90113 0.94558 0.94369 0.93808 0.94033 0.88118 0.93103 0.86095 0.88839 0.94046 0.82418 0.84281 0.83899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.63 37.16 0.36 -2.64 16 2 C -0.12 -2.99 5.35 -26.73 -0.14 -3.13 16 3 C 0.22 5.55 2.03 -68.86 -0.14 5.42 16 4 H 0.00 0.13 7.84 -51.93 -0.41 -0.28 16 5 C -0.49 -13.79 8.60 -34.44 -0.30 -14.08 16 6 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 7 C 0.06 1.54 5.29 -17.82 -0.09 1.45 16 8 N -0.90 -25.69 11.29 55.43 0.63 -25.07 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.68 -15.02 6.26 -109.22 -0.68 -15.71 16 14 C 0.11 2.25 5.56 -4.97 -0.03 2.22 16 15 C 0.12 2.10 6.34 -82.51 -0.52 1.58 16 16 N -0.46 -7.28 10.27 -9.42 -0.10 -7.37 16 17 C 0.08 0.99 11.18 -17.55 -0.20 0.79 16 18 C -0.16 -1.62 10.11 -39.45 -0.40 -2.02 16 19 C -0.12 -1.45 10.16 -39.21 -0.40 -1.85 16 20 C 0.07 1.17 7.27 -39.27 -0.29 0.88 16 21 F -0.12 -2.17 16.49 2.25 0.04 -2.13 16 22 H 0.04 0.66 6.66 -51.93 -0.35 0.31 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.32 6.71 6.61 -39.29 -0.26 6.45 16 29 H 0.09 2.01 7.45 -51.93 -0.39 1.62 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 32 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 284.08 15.07 4.28 4.28 Total: -1.00 -29.89 284.08 -7.22 -37.11 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -4.21 Total: 3.48 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -2.15 Total: -11.38 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -0.15 Total: -48.15 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.89 -7.22 -37.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152604.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.832 kcal (2) G-P(sol) polarization free energy of solvation -29.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds