Wall clock time and date at job start Thu Apr 9 2020 12:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.52991 * 109.46950 * 207.01390 * 3 2 1 5 5 N 1.46902 * 109.46968 * 183.95774 * 4 3 2 6 6 C 1.46897 * 111.00190 * 163.90738 * 5 4 3 7 7 C 1.50699 * 109.47091 * 293.95191 * 6 5 4 8 8 H 1.08003 * 119.99941 * 359.97438 * 7 6 5 9 9 C 1.37884 * 120.00157 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99909 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99870 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47282 * 89.99890 * 11 9 7 13 13 H 1.48504 * 109.47203 * 330.00015 * 11 9 7 14 14 H 1.48493 * 109.47126 * 210.00129 * 11 9 7 15 15 C 1.46900 * 110.99982 * 287.85740 * 5 4 3 16 16 H 1.09005 * 109.52041 * 50.00063 * 15 5 4 17 17 C 1.53182 * 109.52410 * 289.87846 * 15 5 4 18 18 C 1.53184 * 109.03180 * 183.17564 * 17 15 5 19 19 C 1.53086 * 109.21608 * 56.87904 * 18 17 15 20 20 O 1.42899 * 109.41974 * 302.42703 * 19 18 17 21 21 C 1.42903 * 114.09850 * 61.15226 * 20 19 18 22 22 H 1.09000 * 109.46898 * 87.01329 * 3 2 1 23 23 H 1.08995 * 109.46986 * 327.01353 * 3 2 1 24 24 H 1.09000 * 109.47692 * 63.95492 * 4 3 2 25 25 H 1.09003 * 109.47297 * 303.95492 * 4 3 2 26 26 H 1.08999 * 109.47481 * 173.95254 * 6 5 4 27 27 H 1.09004 * 109.47227 * 53.95080 * 6 5 4 28 28 H 0.97002 * 119.99736 * 179.97438 * 10 9 7 29 29 H 1.09003 * 109.53530 * 302.97490 * 17 15 5 30 30 H 1.08992 * 109.54500 * 63.24103 * 17 15 5 31 31 H 1.09007 * 109.46707 * 296.97598 * 18 17 15 32 32 H 1.08994 * 109.57715 * 176.85725 * 18 17 15 33 33 H 1.09001 * 109.48286 * 182.43908 * 19 18 17 34 34 H 1.08997 * 109.47801 * 62.41163 * 19 18 17 35 35 H 1.09001 * 109.48556 * 178.85819 * 21 20 19 36 36 H 1.09010 * 109.47969 * 58.82574 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.2859 0.6552 5 7 4.5833 1.3310 0.5705 6 6 5.0843 2.6870 0.8316 7 6 4.6330 3.6102 -0.2707 8 1 4.0343 3.2277 -1.0842 9 6 4.9845 4.9431 -0.2408 10 7 4.5911 5.7486 -1.2031 11 14 6.0194 5.6048 1.1664 12 1 7.4587 5.4890 0.8195 13 1 5.7421 4.8201 2.3964 14 1 5.6802 7.0311 1.4023 15 6 5.1936 0.3588 1.4871 16 1 4.7284 -0.6168 1.3458 17 6 4.9876 0.8194 2.9334 18 6 5.6959 -0.1593 3.8751 19 6 7.1767 -0.2415 3.4954 20 8 7.2953 -0.6461 2.1301 21 6 6.6938 0.2565 1.1997 22 1 2.9713 -0.0527 -1.0263 23 1 2.9717 -0.8611 0.5595 24 1 2.8131 1.3057 1.7016 25 1 2.6969 2.1486 0.1382 26 1 6.1735 2.6710 0.8690 27 1 4.6931 3.0415 1.7853 28 1 4.8380 6.6864 -1.1819 29 1 5.4083 1.8168 3.0617 30 1 3.9220 0.8397 3.1613 31 1 5.2410 -1.1456 3.7832 32 1 5.6023 0.1905 4.9032 33 1 7.6761 -0.9693 4.1350 34 1 7.6403 0.7362 3.6265 35 1 6.8453 -0.1125 0.1853 36 1 7.1511 1.2409 1.3006 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254385607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:57 Heat of formation + Delta-G solvation = -18.992775 kcal Electronic energy + Delta-G solvation = -17482.386563 eV Core-core repulsion = 14773.653195 eV Total energy + Delta-G solvation = -2708.733368 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.66650 -37.22264 -36.10704 -32.95497 -32.56119 -31.39603 -29.61032 -26.90547 -25.07344 -23.32065 -22.67472 -21.25569 -18.86242 -17.27517 -17.11294 -16.16418 -15.94540 -15.06593 -14.83716 -14.62877 -14.22016 -13.77791 -13.63097 -13.48189 -12.91845 -12.62474 -12.52961 -12.40344 -12.12541 -11.76571 -11.52651 -11.20279 -11.02663 -10.90532 -10.62831 -10.52027 -10.32527 -10.07298 -9.92912 -9.52487 -9.13743 -8.64375 -7.56255 -6.13348 -4.11484 2.95233 3.00387 3.21131 3.28408 3.30057 3.92265 4.19219 4.33594 4.72425 4.91341 4.98405 5.05035 5.16751 5.20122 5.31322 5.42096 5.47023 5.53825 5.73435 5.77327 5.86957 5.92832 5.99509 6.03414 6.15555 6.36197 6.39653 6.44928 6.72752 6.84179 7.30194 7.46882 7.70088 7.77020 7.86667 8.53360 8.94863 9.47664 10.99480 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.013771 B = 0.010759 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.743258 B = 2601.816809 C = 4168.178292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.218 3.782 3 C -0.027 4.027 4 C 0.062 3.938 5 N -0.514 5.514 6 C 0.159 3.841 7 C -0.514 4.514 8 H 0.083 0.917 9 C 0.071 3.929 10 N -0.896 5.896 11 Si 0.870 3.130 12 H -0.275 1.275 13 H -0.268 1.268 14 H -0.286 1.286 15 C 0.047 3.953 16 H 0.084 0.916 17 C -0.161 4.161 18 C -0.150 4.150 19 C 0.059 3.941 20 O -0.385 6.385 21 C 0.067 3.933 22 H 0.118 0.882 23 H 0.099 0.901 24 H 0.034 0.966 25 H 0.101 0.899 26 H 0.029 0.971 27 H -0.006 1.006 28 H 0.264 0.736 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.103 0.897 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.981 -11.487 8.491 14.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.099 4.099 3 C -0.067 4.067 4 C -0.067 4.067 5 N -0.238 5.238 6 C 0.033 3.967 7 C -0.552 4.552 8 H 0.101 0.899 9 C -0.131 4.131 10 N -0.535 5.535 11 Si 0.698 3.302 12 H -0.201 1.201 13 H -0.193 1.193 14 H -0.212 1.212 15 C -0.062 4.062 16 H 0.102 0.898 17 C -0.200 4.200 18 C -0.188 4.188 19 C -0.018 4.018 20 O -0.303 6.303 21 C -0.010 4.010 22 H 0.136 0.864 23 H 0.117 0.883 24 H 0.052 0.948 25 H 0.120 0.880 26 H 0.047 0.953 27 H 0.012 0.988 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.121 0.879 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.531 -11.583 7.874 14.233 hybrid contribution 0.598 1.089 1.679 2.089 sum 3.129 -10.494 9.553 14.532 Atomic orbital electron populations 1.81167 1.13245 1.09163 1.09564 1.29312 0.95392 0.92664 0.92580 1.19388 0.80656 1.01101 1.05559 1.21942 0.89266 0.96805 0.98693 1.62029 1.04358 1.07903 1.49487 1.20267 0.95499 0.84648 0.96305 1.21021 1.33955 0.92151 1.08094 0.89895 1.24886 0.95727 0.96899 0.95625 1.69882 1.45946 1.05162 1.32495 0.86939 0.81281 0.78588 0.83424 1.20059 1.19312 1.21170 1.22395 0.96462 0.97352 0.90016 0.89837 1.22352 1.01036 0.99953 0.96707 1.22140 0.96715 1.00377 0.99572 1.22538 0.95519 1.00078 0.83665 1.87905 1.77686 1.49232 1.15513 1.22677 0.91340 0.93889 0.93064 0.86388 0.88251 0.94779 0.88032 0.95276 0.98797 0.92565 0.91027 0.91488 0.91297 0.91437 0.89345 0.93409 0.87879 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.76 18.54 42.15 0.78 -6.98 16 2 C 0.22 3.17 15.43 -20.76 -0.32 2.85 16 3 C -0.03 -0.32 5.69 -29.52 -0.17 -0.49 16 4 C 0.06 0.99 4.67 -3.83 -0.02 0.97 16 5 N -0.51 -8.86 4.40 -227.92 -1.00 -9.87 16 6 C 0.16 3.38 2.74 -4.98 -0.01 3.36 16 7 C -0.51 -13.38 8.84 -34.44 -0.30 -13.68 16 8 H 0.08 2.34 7.50 -52.48 -0.39 1.95 16 9 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 10 N -0.90 -26.36 13.96 55.43 0.77 -25.58 16 11 Si 0.87 20.38 27.47 -169.99 -4.67 15.71 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 15 C 0.05 0.68 2.29 -67.57 -0.15 0.52 16 16 H 0.08 1.05 6.48 -51.93 -0.34 0.72 16 17 C -0.16 -2.22 4.62 -26.54 -0.12 -2.34 16 18 C -0.15 -1.69 6.13 -26.59 -0.16 -1.85 16 19 C 0.06 0.69 6.84 37.20 0.25 0.94 16 20 O -0.39 -5.43 10.77 -35.23 -0.38 -5.81 16 21 C 0.07 0.98 6.13 37.20 0.23 1.21 16 22 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 23 H 0.10 0.97 6.75 -51.93 -0.35 0.62 16 24 H 0.03 0.52 6.31 -51.93 -0.33 0.19 16 25 H 0.10 1.92 6.59 -51.93 -0.34 1.58 16 26 H 0.03 0.63 5.47 -51.93 -0.28 0.35 16 27 H -0.01 -0.12 5.82 -51.93 -0.30 -0.42 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.07 1.13 6.39 -51.93 -0.33 0.80 16 30 H 0.07 0.90 6.63 -51.93 -0.34 0.56 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.06 0.91 6.27 -51.92 -0.33 0.59 16 LS Contribution 286.11 15.07 4.31 4.31 Total: -1.00 -29.67 286.11 -6.11 -35.77 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -5.04 Total: -0.89 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -0.88 Total: -6.67 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.55 Total: -42.43 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.38 Total: -5.81 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.67 Total: 15.71 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.67 -6.11 -35.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254385607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.781 kcal (2) G-P(sol) polarization free energy of solvation -29.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds