Wall clock time and date at job start Thu Apr 9 2020 12:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.52991 * 109.46950 * 207.01390 * 3 2 1 5 5 N 1.46902 * 109.46968 * 183.95774 * 4 3 2 6 6 C 1.46897 * 111.00190 * 163.90738 * 5 4 3 7 7 C 1.50699 * 109.47091 * 293.95191 * 6 5 4 8 8 H 1.08003 * 119.99941 * 359.97438 * 7 6 5 9 9 C 1.37884 * 120.00157 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99909 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99870 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47282 * 89.99890 * 11 9 7 13 13 H 1.48504 * 109.47203 * 330.00015 * 11 9 7 14 14 H 1.48493 * 109.47126 * 210.00129 * 11 9 7 15 15 C 1.46900 * 110.99982 * 287.85740 * 5 4 3 16 16 H 1.09005 * 109.52041 * 50.00063 * 15 5 4 17 17 C 1.53182 * 109.52410 * 289.87846 * 15 5 4 18 18 C 1.53184 * 109.03180 * 183.17564 * 17 15 5 19 19 C 1.53086 * 109.21608 * 56.87904 * 18 17 15 20 20 O 1.42899 * 109.41974 * 302.42703 * 19 18 17 21 21 C 1.42903 * 114.09850 * 61.15226 * 20 19 18 22 22 H 1.09000 * 109.46898 * 87.01329 * 3 2 1 23 23 H 1.08995 * 109.46986 * 327.01353 * 3 2 1 24 24 H 1.09000 * 109.47692 * 63.95492 * 4 3 2 25 25 H 1.09003 * 109.47297 * 303.95492 * 4 3 2 26 26 H 1.08999 * 109.47481 * 173.95254 * 6 5 4 27 27 H 1.09004 * 109.47227 * 53.95080 * 6 5 4 28 28 H 0.97002 * 119.99736 * 179.97438 * 10 9 7 29 29 H 1.09003 * 109.53530 * 302.97490 * 17 15 5 30 30 H 1.08992 * 109.54500 * 63.24103 * 17 15 5 31 31 H 1.09007 * 109.46707 * 296.97598 * 18 17 15 32 32 H 1.08994 * 109.57715 * 176.85725 * 18 17 15 33 33 H 1.09001 * 109.48286 * 182.43908 * 19 18 17 34 34 H 1.08997 * 109.47801 * 62.41163 * 19 18 17 35 35 H 1.09001 * 109.48556 * 178.85819 * 21 20 19 36 36 H 1.09010 * 109.47969 * 58.82574 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.2859 0.6552 5 7 4.5833 1.3310 0.5705 6 6 5.0843 2.6870 0.8316 7 6 4.6330 3.6102 -0.2707 8 1 4.0343 3.2277 -1.0842 9 6 4.9845 4.9431 -0.2408 10 7 4.5911 5.7486 -1.2031 11 14 6.0194 5.6048 1.1664 12 1 7.4587 5.4890 0.8195 13 1 5.7421 4.8201 2.3964 14 1 5.6802 7.0311 1.4023 15 6 5.1936 0.3588 1.4871 16 1 4.7284 -0.6168 1.3458 17 6 4.9876 0.8194 2.9334 18 6 5.6959 -0.1593 3.8751 19 6 7.1767 -0.2415 3.4954 20 8 7.2953 -0.6461 2.1301 21 6 6.6938 0.2565 1.1997 22 1 2.9713 -0.0527 -1.0263 23 1 2.9717 -0.8611 0.5595 24 1 2.8131 1.3057 1.7016 25 1 2.6969 2.1486 0.1382 26 1 6.1735 2.6710 0.8690 27 1 4.6931 3.0415 1.7853 28 1 4.8380 6.6864 -1.1819 29 1 5.4083 1.8168 3.0617 30 1 3.9220 0.8397 3.1613 31 1 5.2410 -1.1456 3.7832 32 1 5.6023 0.1905 4.9032 33 1 7.6761 -0.9693 4.1350 34 1 7.6403 0.7362 3.6265 35 1 6.8453 -0.1125 0.1853 36 1 7.1511 1.2409 1.3006 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254385607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:57 Heat of formation + Delta-G solvation = -39.708712 kcal Electronic energy + Delta-G solvation = -17483.284874 eV Core-core repulsion = 14773.653195 eV Total energy + Delta-G solvation = -2709.631679 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.81344 -38.43347 -37.38185 -34.76247 -33.78441 -32.60923 -31.05359 -28.47455 -26.12420 -24.57698 -24.24105 -22.40444 -20.17334 -19.00372 -18.44298 -17.30646 -17.10120 -16.39334 -16.19580 -15.90485 -15.46467 -15.17803 -15.00006 -14.65187 -14.39186 -14.07438 -14.03025 -13.47510 -13.41558 -13.04191 -12.84403 -12.73959 -12.39471 -12.18846 -11.94778 -11.83089 -11.69551 -11.51482 -11.40218 -11.13540 -10.73246 -10.32254 -8.95471 -8.24336 -6.25789 1.35421 1.36608 1.45233 1.75623 1.83951 2.35768 2.78572 3.09524 3.11938 3.54644 3.86911 3.98385 4.04259 4.10789 4.23342 4.34104 4.38396 4.53686 4.65793 4.73661 4.87446 4.88684 4.94448 4.99532 5.03537 5.07509 5.16546 5.23626 5.29555 5.42391 5.60608 6.00254 6.24797 6.38964 6.60795 6.69463 6.82809 7.37319 8.91933 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.013771 B = 0.010759 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.743258 B = 2601.816809 C = 4168.178292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.241 3.759 3 C -0.012 4.012 4 C 0.065 3.935 5 N -0.520 5.520 6 C 0.171 3.829 7 C -0.509 4.509 8 H 0.047 0.953 9 C 0.009 3.991 10 N -0.948 5.948 11 Si 0.934 3.066 12 H -0.266 1.266 13 H -0.249 1.249 14 H -0.289 1.289 15 C 0.049 3.951 16 H 0.112 0.888 17 C -0.162 4.162 18 C -0.142 4.142 19 C 0.051 3.949 20 O -0.392 6.392 21 C 0.069 3.931 22 H 0.129 0.871 23 H 0.139 0.861 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.032 0.968 27 H -0.008 1.008 28 H 0.264 0.736 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.042 0.958 35 H 0.106 0.894 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.057 -13.559 10.572 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.076 4.076 3 C -0.052 4.052 4 C -0.065 4.065 5 N -0.244 5.244 6 C 0.044 3.956 7 C -0.548 4.548 8 H 0.065 0.935 9 C -0.189 4.189 10 N -0.590 5.590 11 Si 0.759 3.241 12 H -0.191 1.191 13 H -0.173 1.173 14 H -0.215 1.215 15 C -0.059 4.059 16 H 0.130 0.870 17 C -0.201 4.201 18 C -0.180 4.180 19 C -0.025 4.025 20 O -0.310 6.310 21 C -0.008 4.008 22 H 0.147 0.853 23 H 0.157 0.843 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.050 0.950 27 H 0.010 0.990 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.132 0.868 34 H 0.060 0.940 35 H 0.124 0.876 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.608 -13.689 9.972 17.316 hybrid contribution 0.256 1.674 1.003 1.968 sum 3.864 -12.015 10.976 16.726 Atomic orbital electron populations 1.81193 1.14766 1.10711 1.11237 1.29624 0.95597 0.91217 0.91116 1.19407 0.78933 1.00398 1.06490 1.21832 0.88380 0.97195 0.99092 1.61887 1.05167 1.06297 1.51045 1.19960 0.95471 0.86118 0.94018 1.21337 1.32317 0.92979 1.08149 0.93520 1.25760 0.97352 0.97453 0.98287 1.70044 1.48318 1.05524 1.35076 0.85902 0.79713 0.77713 0.80788 1.19132 1.17259 1.21477 1.22495 0.96253 0.97392 0.89805 0.87020 1.22331 1.01489 0.99454 0.96828 1.22103 0.95917 1.00316 0.99678 1.22775 0.96245 1.00703 0.82817 1.87903 1.77680 1.48947 1.16505 1.22578 0.91394 0.93129 0.93656 0.85320 0.84311 0.93842 0.92081 0.94992 0.99028 0.92707 0.93381 0.91074 0.89849 0.89834 0.86783 0.93998 0.87638 0.94495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.79 18.54 20.01 0.37 -16.42 16 2 C 0.24 6.63 15.43 89.44 1.38 8.01 16 3 C -0.01 -0.27 5.69 28.79 0.16 -0.10 16 4 C 0.06 1.96 4.67 86.30 0.40 2.37 16 5 N -0.52 -17.20 4.40 -875.00 -3.85 -21.06 16 6 C 0.17 7.20 2.74 85.56 0.23 7.44 16 7 C -0.51 -27.15 8.84 25.60 0.23 -26.92 16 8 H 0.05 2.76 7.50 -2.91 -0.02 2.74 16 9 C 0.01 0.48 5.47 84.66 0.46 0.95 16 10 N -0.95 -57.72 13.96 21.45 0.30 -57.42 16 11 Si 0.93 42.21 27.47 68.60 1.88 44.09 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 H -0.25 -10.34 6.54 99.48 0.65 -9.69 16 14 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 15 C 0.05 1.27 2.29 45.00 0.10 1.37 16 16 H 0.11 2.29 6.48 -2.38 -0.02 2.27 16 17 C -0.16 -3.96 4.62 30.72 0.14 -3.82 16 18 C -0.14 -2.63 6.13 30.68 0.19 -2.44 16 19 C 0.05 1.02 6.84 72.01 0.49 1.51 16 20 O -0.39 -9.84 10.77 -148.98 -1.60 -11.45 16 21 C 0.07 1.87 6.13 72.01 0.44 2.31 16 22 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 23 H 0.14 2.03 6.75 -2.39 -0.02 2.02 16 24 H 0.04 1.24 6.31 -2.39 -0.02 1.22 16 25 H 0.06 2.36 6.59 -2.39 -0.02 2.35 16 26 H 0.03 1.35 5.47 -2.39 -0.01 1.34 16 27 H -0.01 -0.34 5.82 -2.38 -0.01 -0.35 16 28 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 29 H 0.05 1.41 6.39 -2.39 -0.02 1.39 16 30 H 0.07 1.68 6.63 -2.39 -0.02 1.66 16 31 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.11 2.75 8.14 -2.39 -0.02 2.74 16 36 H 0.04 1.14 6.27 -2.38 -0.01 1.12 16 Total: -1.00 -66.22 286.11 2.36 -63.87 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 1.02 Total: 7.72 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 4.24 Total: -9.33 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -3.18 Total: -94.89 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -1.60 Total: -11.45 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.88 Total: 44.09 kcal Total: -66.22 2.36 -63.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254385607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.157 kcal (2) G-P(sol) polarization free energy of solvation -66.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds