Wall clock time and date at job start Thu Apr 9 2020 12:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86807 * 119.99954 * 2 1 4 4 H 1.48504 * 109.46899 * 240.00122 * 3 2 1 5 5 H 1.48496 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47095 * 120.00124 * 3 2 1 7 7 C 1.40045 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99923 * 179.97438 * 7 2 1 9 9 C 1.46379 * 119.99985 * 359.97438 * 7 2 1 10 10 O 1.21686 * 119.99938 * 359.97438 * 9 7 2 11 11 N 1.34770 * 119.99780 * 180.02562 * 9 7 2 12 12 C 1.46505 * 119.99664 * 179.97438 * 11 9 7 13 13 C 1.50706 * 109.47014 * 179.97438 * 12 11 9 14 14 C 1.38241 * 119.98981 * 269.72617 * 13 12 11 15 15 C 1.38210 * 120.01139 * 179.72300 * 14 13 12 16 16 C 1.38349 * 119.98969 * 0.55498 * 15 14 13 17 17 Cl 1.73598 * 120.01695 * 179.70185 * 16 15 14 18 18 C 1.38361 * 119.97127 * 359.71727 * 16 15 14 19 19 C 1.38214 * 119.98666 * 0.02562 * 18 16 15 20 20 H 0.97008 * 120.00026 * 359.97438 * 1 2 3 21 21 H 0.97000 * 120.00231 * 359.97438 * 11 9 7 22 22 H 1.09000 * 109.46864 * 60.00469 * 12 11 9 23 23 H 1.09000 * 109.47078 * 299.99722 * 12 11 9 24 24 H 1.08002 * 119.99152 * 0.02562 * 14 13 12 25 25 H 1.08002 * 120.00562 * 180.27305 * 15 14 13 26 26 H 1.07999 * 120.00328 * 179.97438 * 18 16 15 27 27 H 1.07997 * 119.99198 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6964 -1.2126 5 1 1.2757 2.7465 -0.0006 6 1 3.0945 1.6965 1.2125 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0001 9 6 1.2750 -2.4805 0.0017 10 8 0.0582 -2.4805 0.0026 11 7 1.9489 -3.6476 0.0027 12 6 1.2164 -4.9164 0.0044 13 6 2.1957 -6.0619 0.0047 14 6 2.6395 -6.5918 -1.1925 15 6 3.5420 -7.6386 -1.1928 16 6 3.9926 -8.1636 0.0053 17 17 5.1202 -9.4834 0.0057 18 6 3.5438 -7.6364 1.2032 19 6 2.6453 -6.5861 1.2023 20 1 -0.4850 0.8401 0.0004 21 1 2.9189 -3.6476 0.0023 22 1 0.5895 -4.9751 -0.8853 23 1 0.5901 -4.9731 0.8947 24 1 2.2846 -6.1846 -2.1277 25 1 3.8920 -8.0497 -2.1282 26 1 3.8948 -8.0461 2.1388 27 1 2.2946 -6.1748 2.1373 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000060965.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:05 Heat of formation + Delta-G solvation = -30.749786 kcal Electronic energy + Delta-G solvation = -13822.146911 eV Core-core repulsion = 11184.228034 eV Total energy + Delta-G solvation = -2637.918877 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 239.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.44086 -37.25180 -36.50392 -33.65892 -32.38009 -31.08430 -30.50082 -26.82731 -24.82590 -22.83170 -21.30443 -19.69921 -17.55530 -16.89642 -15.58064 -15.43460 -15.12847 -14.40152 -14.05675 -13.59346 -13.42373 -13.18333 -13.14232 -12.27575 -11.74844 -11.57730 -11.27827 -11.18871 -11.05221 -10.91929 -10.81326 -10.46946 -10.26843 -9.06314 -8.86513 -8.70335 -7.62983 -7.56485 -6.20528 -4.66506 1.09345 1.27795 2.04584 3.15080 3.19951 3.21859 3.58417 4.10779 4.56233 4.76461 4.84661 4.89206 5.13773 5.32594 5.36064 5.65783 5.71864 5.88894 6.15734 6.18176 6.21036 6.34525 6.72762 6.79558 7.41524 7.88807 8.03348 8.29855 9.00266 9.49103 10.57141 10.75168 Molecular weight = 239.05amu Principal moments of inertia in cm(-1) A = 0.051003 B = 0.004390 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.859369 B = 6376.039300 C = 6620.170080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.763 5.763 12 C 0.168 3.832 13 C -0.081 4.081 14 C -0.093 4.093 15 C -0.113 4.113 16 C -0.039 4.039 17 Cl -0.081 7.081 18 C -0.113 4.113 19 C -0.093 4.093 20 H 0.269 0.731 21 H 0.381 0.619 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.134 0.866 25 H 0.131 0.869 26 H 0.131 0.869 27 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.406 -13.949 0.011 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.463 6.463 11 N -0.419 5.419 12 C 0.043 3.957 13 C -0.081 4.081 14 C -0.111 4.111 15 C -0.132 4.132 16 C -0.066 4.066 17 Cl -0.052 7.052 18 C -0.132 4.132 19 C -0.111 4.111 20 H 0.080 0.920 21 H 0.213 0.787 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.152 0.848 25 H 0.149 0.851 26 H 0.149 0.851 27 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.391 -13.951 0.011 15.788 hybrid contribution 1.089 0.597 -0.001 1.242 sum 8.480 -13.355 0.011 15.820 Atomic orbital electron populations 1.70009 1.07058 1.27426 1.35179 1.25711 0.94636 1.00302 0.92610 0.86420 0.79804 0.80973 0.79467 1.19274 1.20544 1.19268 1.20839 0.93573 0.89286 1.54465 0.91438 1.18245 0.87204 0.82315 0.76357 1.90603 1.14081 1.86681 1.54975 1.46213 1.08641 1.04136 1.82933 1.19841 0.92042 0.82025 1.01783 1.20374 0.97748 0.97044 0.92966 1.21135 0.96245 0.95221 0.98548 1.21027 0.98158 0.97254 0.96740 1.20917 0.96823 0.93445 0.95388 1.98354 1.60727 1.47182 1.98987 1.21031 0.98216 0.97193 0.96742 1.21136 0.96260 0.95202 0.98549 0.92008 0.78712 0.92238 0.92228 0.84820 0.85104 0.85104 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.93 11.83 55.55 0.66 -22.27 15 2 C 0.09 2.42 5.50 -17.37 -0.10 2.33 15 3 Si 0.91 20.02 29.56 -169.99 -5.02 14.99 15 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 15 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 15 7 C -0.54 -15.28 9.54 -35.63 -0.34 -15.62 15 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 15 9 C 0.55 15.62 7.75 -12.99 -0.10 15.52 15 10 O -0.58 -18.66 15.02 5.20 0.08 -18.59 15 11 N -0.76 -16.77 5.54 -62.90 -0.35 -17.12 15 12 C 0.17 3.12 5.80 -5.19 -0.03 3.09 15 13 C -0.08 -1.18 5.25 -104.62 -0.55 -1.73 15 14 C -0.09 -1.21 9.70 -39.59 -0.38 -1.60 15 15 C -0.11 -1.33 9.83 -39.55 -0.39 -1.72 15 16 C -0.04 -0.46 6.32 -39.50 -0.25 -0.71 15 17 Cl -0.08 -0.87 28.96 -51.86 -1.50 -2.37 15 18 C -0.11 -1.33 9.83 -39.54 -0.39 -1.72 15 19 C -0.09 -1.21 9.70 -39.59 -0.38 -1.60 15 20 H 0.27 7.29 8.29 -40.82 -0.34 6.96 15 21 H 0.38 7.52 8.44 -40.82 -0.34 7.18 15 22 H 0.06 1.16 8.08 -51.93 -0.42 0.74 15 23 H 0.06 1.16 8.09 -51.93 -0.42 0.74 15 24 H 0.13 1.64 8.06 -52.49 -0.42 1.22 15 25 H 0.13 1.28 8.06 -52.49 -0.42 0.86 15 26 H 0.13 1.28 8.06 -52.49 -0.42 0.86 15 27 H 0.13 1.64 8.06 -52.49 -0.42 1.22 15 LS Contribution 264.43 15.07 3.98 3.98 Total: -1.00 -32.88 264.43 -7.49 -40.36 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -2.42 Total: 4.77 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -2.91 Total: -3.75 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.31 Total: -39.40 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.08 Total: -18.59 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.37 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.88 -7.49 -40.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000060965.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.613 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds