Wall clock time and date at job start Thu Apr 9 2020 12:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86806 * 120.00155 * 2 1 4 4 H 1.48501 * 109.47217 * 270.00080 * 3 2 1 5 5 H 1.48500 * 109.47037 * 29.99379 * 3 2 1 6 6 H 1.48498 * 109.47434 * 149.99875 * 3 2 1 7 7 C 1.38953 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99955 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99712 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00108 * 179.97438 * 9 7 2 11 11 O 1.21286 * 119.99822 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00161 * 180.02562 * 10 9 7 13 13 C 1.50701 * 109.47064 * 180.02562 * 12 10 9 14 14 C 1.38241 * 119.98648 * 269.72807 * 13 12 10 15 15 C 1.38215 * 120.00743 * 179.72780 * 14 13 12 16 16 C 1.38349 * 119.98879 * 0.54512 * 15 14 13 17 17 Cl 1.73606 * 120.01120 * 179.70588 * 16 15 14 18 18 C 1.38346 * 119.97570 * 359.73013 * 16 15 14 19 19 C 1.38215 * 119.98756 * 359.97438 * 18 16 15 20 20 H 0.96996 * 119.99832 * 0.02562 * 1 2 3 21 21 H 0.97005 * 120.00430 * 0.02562 * 9 7 2 22 22 H 1.09002 * 109.47152 * 60.00245 * 12 10 9 23 23 H 1.09001 * 109.46980 * 300.00345 * 12 10 9 24 24 H 1.07995 * 119.99451 * 359.97438 * 14 13 12 25 25 H 1.07999 * 120.00426 * 180.27387 * 15 14 13 26 26 H 1.08006 * 120.01050 * 179.97438 * 18 16 15 27 27 H 1.07995 * 119.99616 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0465 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0000 13 6 2.2231 -6.0084 0.0007 14 6 2.6687 -6.5372 -1.1963 15 6 3.5712 -7.5840 -1.1961 16 6 4.0200 -8.1100 0.0022 17 17 5.1477 -9.4299 0.0031 18 6 3.5693 -7.5841 1.1998 19 6 2.6715 -6.5332 1.1985 20 1 -0.4850 0.8400 -0.0004 21 1 0.3534 -2.3906 -0.0002 22 1 0.6175 -4.9205 -0.8903 23 1 0.6168 -4.9208 0.8897 24 1 2.3147 -6.1297 -2.1316 25 1 3.9227 -7.9942 -2.1313 26 1 3.9189 -7.9945 2.1357 27 1 2.3193 -6.1228 2.1333 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005750464.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:27 Heat of formation + Delta-G solvation = -31.320577 kcal Electronic energy + Delta-G solvation = -13927.629713 eV Core-core repulsion = 11289.686085 eV Total energy + Delta-G solvation = -2637.943628 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 239.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.40617 -37.89480 -36.36223 -34.01448 -32.20368 -31.19328 -30.88759 -27.38997 -24.60944 -22.66505 -21.52068 -19.23080 -17.93303 -16.87620 -15.92744 -15.48690 -15.10737 -14.53848 -13.96475 -13.73129 -13.32005 -13.31032 -13.21632 -12.46860 -11.76169 -11.65339 -11.22112 -11.20985 -11.13337 -11.00516 -10.68402 -10.41567 -10.24477 -9.54920 -8.84377 -8.61851 -8.22353 -8.00971 -6.45222 -3.86243 1.34368 1.49501 2.22158 3.15544 3.24688 3.30641 3.79487 3.85986 4.17176 4.91842 4.94655 5.02647 5.18983 5.21447 5.51147 5.52855 5.78515 5.86184 6.00282 6.14726 6.26583 6.37054 6.45243 6.80297 6.99751 7.52125 8.01654 8.56390 9.13875 9.49781 10.00937 10.72254 Molecular weight = 239.05amu Principal moments of inertia in cm(-1) A = 0.058764 B = 0.004522 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.369221 B = 6190.938873 C = 6362.584521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.561 5.561 10 C 0.442 3.558 11 O -0.588 6.588 12 C -0.101 4.101 13 C -0.034 4.034 14 C -0.096 4.096 15 C -0.110 4.110 16 C -0.044 4.044 17 Cl -0.086 7.086 18 C -0.110 4.110 19 C -0.096 4.096 20 H 0.272 0.728 21 H 0.393 0.607 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.129 0.871 25 H 0.129 0.871 26 H 0.129 0.871 27 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.511 -13.813 0.009 13.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.197 5.197 10 C 0.228 3.772 11 O -0.473 6.473 12 C -0.142 4.142 13 C -0.035 4.035 14 C -0.114 4.114 15 C -0.129 4.129 16 C -0.070 4.070 17 Cl -0.057 7.057 18 C -0.129 4.129 19 C -0.114 4.114 20 H 0.082 0.918 21 H 0.227 0.773 22 H 0.108 0.892 23 H 0.108 0.892 24 H 0.147 0.853 25 H 0.147 0.853 26 H 0.147 0.853 27 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.288 -13.752 0.017 13.941 hybrid contribution -0.085 0.823 -0.013 0.828 sum 2.203 -12.928 0.004 13.115 Atomic orbital electron populations 1.69608 1.05933 1.28231 1.50396 1.25271 0.95643 0.99752 0.97224 0.85860 0.79259 0.80767 0.78431 1.20371 1.20877 1.19401 1.19715 0.93392 0.82236 1.47696 0.87919 1.41887 1.09241 1.04572 1.64033 1.19710 0.88251 0.84518 0.84760 1.90553 1.13795 1.87198 1.55747 1.20644 0.97181 0.92267 1.04066 1.19547 0.96452 0.94438 0.93066 1.20966 0.96858 0.95393 0.98199 1.20934 0.98069 0.97294 0.96596 1.20821 0.97083 0.93722 0.95392 1.98338 1.61025 1.47379 1.98998 1.20935 0.98119 0.97244 0.96606 1.20966 0.96886 0.95342 0.98199 0.91816 0.77345 0.89162 0.89167 0.85286 0.85334 0.85333 0.85286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.19 13.05 55.50 0.72 -23.46 15 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 15 3 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 15 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 7 C -0.30 -8.31 9.68 -14.94 -0.14 -8.45 15 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 15 9 N -0.56 -13.96 5.29 -10.97 -0.06 -14.02 15 10 C 0.44 10.18 7.78 -10.98 -0.09 10.10 15 11 O -0.59 -15.83 15.61 5.55 0.09 -15.74 15 12 C -0.10 -1.70 5.83 -29.03 -0.17 -1.87 15 13 C -0.03 -0.56 4.37 -104.62 -0.46 -1.02 15 14 C -0.10 -1.45 9.70 -39.59 -0.38 -1.83 15 15 C -0.11 -1.54 9.83 -39.55 -0.39 -1.93 15 16 C -0.04 -0.61 6.32 -39.50 -0.25 -0.86 15 17 Cl -0.09 -1.06 28.96 -51.86 -1.50 -2.57 15 18 C -0.11 -1.54 9.83 -39.55 -0.39 -1.93 15 19 C -0.10 -1.45 9.70 -39.59 -0.38 -1.83 15 20 H 0.27 6.91 8.31 -40.82 -0.34 6.57 15 21 H 0.39 9.27 7.90 -40.82 -0.32 8.95 15 22 H 0.09 1.31 8.08 -51.93 -0.42 0.89 15 23 H 0.09 1.31 8.08 -51.93 -0.42 0.89 15 24 H 0.13 1.76 8.06 -52.49 -0.42 1.34 15 25 H 0.13 1.51 8.06 -52.49 -0.42 1.08 15 26 H 0.13 1.51 8.06 -52.48 -0.42 1.08 15 27 H 0.13 1.77 8.06 -52.49 -0.42 1.34 15 LS Contribution 264.08 15.07 3.98 3.98 Total: -1.00 -30.64 264.08 -6.90 -37.54 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -2.36 Total: 7.51 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -2.75 Total: -9.11 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.67 Total: -37.49 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.09 Total: -15.74 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.64 -6.90 -37.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005750464.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.224 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds