Wall clock time and date at job start Thu Apr 9 2020 12:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86806 * 120.00155 * 2 1 4 4 H 1.48501 * 109.47217 * 270.00080 * 3 2 1 5 5 H 1.48500 * 109.47037 * 29.99379 * 3 2 1 6 6 H 1.48498 * 109.47434 * 149.99875 * 3 2 1 7 7 C 1.38953 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99955 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99712 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00108 * 179.97438 * 9 7 2 11 11 O 1.21286 * 119.99822 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00161 * 180.02562 * 10 9 7 13 13 C 1.50701 * 109.47064 * 180.02562 * 12 10 9 14 14 C 1.38241 * 119.98648 * 269.72807 * 13 12 10 15 15 C 1.38215 * 120.00743 * 179.72780 * 14 13 12 16 16 C 1.38349 * 119.98879 * 0.54512 * 15 14 13 17 17 Cl 1.73606 * 120.01120 * 179.70588 * 16 15 14 18 18 C 1.38346 * 119.97570 * 359.73013 * 16 15 14 19 19 C 1.38215 * 119.98756 * 359.97438 * 18 16 15 20 20 H 0.96996 * 119.99832 * 0.02562 * 1 2 3 21 21 H 0.97005 * 120.00430 * 0.02562 * 9 7 2 22 22 H 1.09002 * 109.47152 * 60.00245 * 12 10 9 23 23 H 1.09001 * 109.46980 * 300.00345 * 12 10 9 24 24 H 1.07995 * 119.99451 * 359.97438 * 14 13 12 25 25 H 1.07999 * 120.00426 * 180.27387 * 15 14 13 26 26 H 1.08006 * 120.01050 * 179.97438 * 18 16 15 27 27 H 1.07995 * 119.99616 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0465 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0000 13 6 2.2231 -6.0084 0.0007 14 6 2.6687 -6.5372 -1.1963 15 6 3.5712 -7.5840 -1.1961 16 6 4.0200 -8.1100 0.0022 17 17 5.1477 -9.4299 0.0031 18 6 3.5693 -7.5841 1.1998 19 6 2.6715 -6.5332 1.1985 20 1 -0.4850 0.8400 -0.0004 21 1 0.3534 -2.3906 -0.0002 22 1 0.6175 -4.9205 -0.8903 23 1 0.6168 -4.9208 0.8897 24 1 2.3147 -6.1297 -2.1316 25 1 3.9227 -7.9942 -2.1313 26 1 3.9189 -7.9945 2.1357 27 1 2.3193 -6.1228 2.1333 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005750464.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:27 Heat of formation + Delta-G solvation = -49.910459 kcal Electronic energy + Delta-G solvation = -13928.435831 eV Core-core repulsion = 11289.686085 eV Total energy + Delta-G solvation = -2638.749746 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 239.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.73814 -39.53251 -37.42712 -35.98234 -33.61789 -33.08073 -31.98308 -28.82608 -26.47517 -23.76865 -22.81320 -20.96079 -19.89730 -18.00433 -17.72037 -16.69933 -16.56797 -16.25509 -15.64120 -15.36371 -14.64163 -14.45285 -14.40806 -14.05033 -13.52963 -13.15926 -12.84382 -12.47550 -12.36586 -12.27570 -12.26862 -12.10094 -11.73381 -11.51210 -10.42109 -10.01914 -9.94305 -9.47978 -8.46854 -5.95573 0.19480 0.38967 1.16077 1.37577 1.41882 1.54230 2.05500 2.29444 2.64389 3.20553 3.39921 3.81155 3.84620 3.99886 4.34175 4.41582 4.51031 4.65630 4.69509 4.85760 5.04517 5.27190 5.27201 5.41407 5.64100 5.86780 6.00951 6.59049 7.12232 7.56105 8.11616 8.70195 Molecular weight = 239.05amu Principal moments of inertia in cm(-1) A = 0.058764 B = 0.004522 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.369221 B = 6190.938873 C = 6362.584521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.991 3.009 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.334 4.334 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.442 3.558 11 O -0.630 6.630 12 C -0.088 4.088 13 C -0.060 4.060 14 C -0.107 4.107 15 C -0.114 4.114 16 C -0.050 4.050 17 Cl -0.071 7.071 18 C -0.114 4.114 19 C -0.107 4.107 20 H 0.278 0.722 21 H 0.398 0.602 22 H 0.115 0.885 23 H 0.115 0.885 24 H 0.139 0.861 25 H 0.149 0.851 26 H 0.149 0.851 27 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.399 -14.370 -0.011 14.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.212 4.212 3 Si 0.814 3.186 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.464 4.464 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.230 3.770 11 O -0.517 6.517 12 C -0.128 4.128 13 C -0.060 4.060 14 C -0.125 4.125 15 C -0.132 4.132 16 C -0.077 4.077 17 Cl -0.042 7.042 18 C -0.132 4.132 19 C -0.125 4.125 20 H 0.087 0.913 21 H 0.232 0.768 22 H 0.133 0.867 23 H 0.133 0.867 24 H 0.157 0.843 25 H 0.167 0.833 26 H 0.167 0.833 27 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.150 -14.326 -0.005 14.486 hybrid contribution -0.001 0.886 -0.007 0.886 sum 2.149 -13.440 -0.012 13.610 Atomic orbital electron populations 1.69662 1.06744 1.29303 1.50225 1.26013 0.96539 1.02334 0.96299 0.84963 0.77898 0.77053 0.78648 1.19658 1.19485 1.19899 1.19650 0.92654 0.84102 1.49957 0.90458 1.41958 1.09411 1.04645 1.64854 1.20781 0.88073 0.85943 0.82177 1.90519 1.16043 1.88141 1.57011 1.20575 0.97102 0.88599 1.06494 1.19652 0.97435 0.94908 0.94018 1.21187 0.97166 0.95820 0.98354 1.21191 0.97549 0.96872 0.97600 1.21015 0.97101 0.94018 0.95534 1.98343 1.60391 1.46525 1.98981 1.21191 0.97594 0.96817 0.97612 1.21187 0.97205 0.95787 0.98353 0.91273 0.76775 0.86661 0.86674 0.84348 0.83309 0.83310 0.84372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.91 13.05 21.66 0.28 -48.62 15 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 15 3 Si 0.99 42.61 29.55 68.60 2.03 44.64 15 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 5 H -0.27 -10.98 7.11 99.48 0.71 -10.27 15 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 7 C -0.33 -18.78 9.68 84.04 0.81 -17.97 15 8 H 0.08 4.66 7.16 -2.91 -0.02 4.64 15 9 N -0.57 -28.72 5.29 -306.99 -1.62 -30.34 15 10 C 0.44 20.42 7.78 87.66 0.68 21.10 15 11 O -0.63 -34.45 15.61 -3.05 -0.05 -34.50 15 12 C -0.09 -2.83 5.83 29.10 0.17 -2.66 15 13 C -0.06 -1.87 4.37 -19.86 -0.09 -1.95 15 14 C -0.11 -3.10 9.70 22.27 0.22 -2.89 15 15 C -0.11 -2.98 9.83 22.29 0.22 -2.76 15 16 C -0.05 -1.32 6.32 22.32 0.14 -1.18 15 17 Cl -0.07 -1.62 28.96 -2.72 -0.08 -1.70 15 18 C -0.11 -2.98 9.83 22.29 0.22 -2.76 15 19 C -0.11 -3.11 9.70 22.27 0.22 -2.90 15 20 H 0.28 13.85 8.31 -92.71 -0.77 13.08 15 21 H 0.40 18.81 7.90 -92.70 -0.73 18.08 15 22 H 0.12 3.12 8.08 -2.39 -0.02 3.10 15 23 H 0.12 3.12 8.08 -2.39 -0.02 3.10 15 24 H 0.14 3.61 8.06 -2.91 -0.02 3.59 15 25 H 0.15 3.18 8.06 -2.91 -0.02 3.15 15 26 H 0.15 3.18 8.06 -2.91 -0.02 3.15 15 27 H 0.14 3.62 8.06 -2.91 -0.02 3.59 15 Total: -1.00 -65.34 264.08 4.08 -61.25 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.46 Total: 23.40 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 3.06 Total: -14.13 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -1.34 Total: -78.97 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.05 Total: -34.50 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.08 Total: -1.70 kcal Total: -65.34 4.08 -61.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005750464.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.343 kcal (2) G-P(sol) polarization free energy of solvation -65.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds