Wall clock time and date at job start Thu Apr 9 2020 12:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.44268 * 111.00390 * 2 1 4 4 C 1.54069 * 111.98116 * 219.31185 * 3 2 1 5 5 C 1.54285 * 112.28952 * 318.91279 * 4 3 2 6 6 C 1.50516 * 112.97161 * 318.30061 * 5 4 3 7 7 H 1.08998 * 109.64047 * 332.40584 * 6 5 4 8 8 N 1.46901 * 109.53137 * 212.01288 * 6 5 4 9 9 C 1.47482 * 110.99967 * 79.71394 * 8 6 5 10 10 C 1.53513 * 87.93266 * 138.70311 * 9 8 6 11 11 C 1.50692 * 114.34389 * 220.31828 * 10 9 8 12 12 H 1.08001 * 120.00093 * 93.92437 * 11 10 9 13 13 C 1.37879 * 120.00042 * 273.92076 * 11 10 9 14 14 N 1.31517 * 119.99953 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00090 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47308 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47246 * 120.00224 * 15 13 11 18 18 H 1.48498 * 109.47173 * 240.00226 * 15 13 11 19 19 C 1.47474 * 110.99887 * 175.68718 * 8 6 5 20 20 C 1.54508 * 108.82784 * 92.24257 * 6 5 4 21 21 C 1.45863 * 111.53286 * 282.70803 * 20 6 5 22 22 H 1.09000 * 109.46859 * 298.01667 * 1 2 3 23 23 H 1.08993 * 109.47069 * 58.01024 * 1 2 3 24 24 H 1.08999 * 109.47103 * 178.02184 * 1 2 3 25 25 H 1.09002 * 108.97553 * 339.95802 * 3 2 1 26 26 H 1.09005 * 108.98112 * 98.75186 * 3 2 1 27 27 H 1.09000 * 108.91658 * 79.63715 * 4 3 2 28 28 H 1.09005 * 108.91590 * 198.28199 * 4 3 2 29 29 H 1.09007 * 108.76846 * 79.21533 * 5 4 3 30 30 H 1.08993 * 108.77256 * 197.50240 * 5 4 3 31 31 H 1.08999 * 113.47415 * 253.47222 * 9 8 6 32 32 H 1.09002 * 113.47626 * 23.93799 * 9 8 6 33 33 H 1.08995 * 114.16876 * 87.61957 * 10 9 8 34 34 H 0.96997 * 119.99861 * 179.97438 * 14 13 11 35 35 H 1.08997 * 113.47775 * 336.06216 * 19 8 6 36 36 H 1.09000 * 113.47794 * 106.53158 * 19 8 6 37 37 H 1.09002 * 109.05647 * 162.19914 * 20 6 5 38 38 H 1.09004 * 109.05690 * 43.21441 * 20 6 5 39 39 H 1.09000 * 108.79097 * 182.24753 * 21 20 6 40 40 H 1.08999 * 108.79107 * 300.58821 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9861 1.3468 0.0000 4 6 3.2247 1.4890 -0.9051 5 6 4.1834 0.2868 -0.7782 6 6 4.3614 -0.1750 0.6433 7 1 4.2034 0.6622 1.3230 8 7 5.7193 -0.7066 0.8206 9 6 6.6956 0.3850 0.9947 10 6 7.3641 -0.4619 2.0867 11 6 7.8186 0.3228 3.2903 12 1 7.1727 0.4136 4.1511 13 6 9.0591 0.9247 3.2926 14 7 9.8455 0.8144 2.2442 15 14 9.6227 1.8968 4.7849 16 1 8.5618 1.8688 5.8236 17 1 10.8644 1.2915 5.3298 18 1 9.8903 3.3024 4.3877 19 6 5.9634 -1.0742 2.2278 20 6 3.3282 -1.2849 0.9401 21 6 1.9987 -0.7309 1.1704 22 1 -0.3633 0.4827 0.9072 23 1 -0.3633 0.5444 -0.8716 24 1 -0.3633 -1.0270 -0.0355 25 1 1.2091 2.0248 -0.3533 26 1 2.2596 1.6216 1.0188 27 1 2.8974 1.5721 -1.9415 28 1 3.7609 2.3974 -0.6303 29 1 3.7894 -0.5399 -1.3694 30 1 5.1568 0.5706 -1.1780 31 1 7.3280 0.5454 0.1215 32 1 6.2531 1.3075 1.3706 33 1 8.1187 -1.1549 1.7147 34 1 10.7180 1.2382 2.2458 35 1 5.3255 -0.5411 2.9327 36 1 5.9753 -2.1505 2.3996 37 1 3.6426 -1.8360 1.8264 38 1 3.2869 -1.9687 0.0922 39 1 1.3164 -1.5453 1.4140 40 1 2.0452 -0.0470 2.0178 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254515781.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:41 Heat of formation + Delta-G solvation = 18.058253 kcal Electronic energy + Delta-G solvation = -17835.793609 eV Core-core repulsion = 15264.499988 eV Total energy + Delta-G solvation = -2571.293620 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.31684 -39.39671 -35.42768 -34.27565 -33.42284 -30.12896 -28.25741 -26.79864 -26.31289 -24.95539 -24.09140 -21.44590 -20.52121 -20.44987 -18.61795 -17.18618 -16.73611 -16.46768 -16.11274 -15.81072 -15.68166 -15.26161 -14.56626 -14.06091 -13.98231 -13.83445 -13.76433 -13.17954 -13.02277 -12.81290 -12.79936 -12.63537 -12.31339 -12.20348 -11.88192 -11.81327 -11.59502 -11.28930 -11.21969 -11.02522 -10.71372 -10.49545 -9.64710 -9.26701 -8.15787 -6.27324 1.40728 1.42278 1.54074 2.41671 2.96992 3.13229 3.29216 3.71093 3.96644 4.06173 4.19324 4.24690 4.28743 4.34714 4.46819 4.49133 4.53125 4.57837 4.66784 4.72331 4.79105 4.86349 4.91005 4.93189 5.04758 5.10458 5.15391 5.19941 5.24099 5.27554 5.31276 5.46821 5.62098 5.62334 5.85071 6.11809 6.24567 6.29888 6.47035 6.82178 7.41230 8.94364 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.039726 B = 0.005406 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.654357 B = 5178.264363 C = 5189.004131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.545 5.545 3 C 0.056 3.944 4 C -0.105 4.105 5 C -0.092 4.092 6 C 0.058 3.942 7 H 0.027 0.973 8 N -0.479 5.479 9 C 0.022 3.978 10 C 0.020 3.980 11 C -0.530 4.530 12 H 0.058 0.942 13 C 0.015 3.985 14 N -0.922 5.922 15 Si 0.958 3.042 16 H -0.264 1.264 17 H -0.279 1.279 18 H -0.280 1.280 19 C 0.015 3.985 20 C -0.100 4.100 21 C 0.062 3.938 22 H 0.028 0.972 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.029 0.971 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.030 0.970 34 H 0.263 0.737 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.870 -0.022 -3.574 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.269 5.269 3 C -0.073 4.073 4 C -0.143 4.143 5 C -0.130 4.130 6 C -0.051 4.051 7 H 0.045 0.955 8 N -0.202 5.202 9 C -0.107 4.107 10 C 0.001 3.999 11 C -0.568 4.568 12 H 0.076 0.924 13 C -0.184 4.184 14 N -0.561 5.561 15 Si 0.783 3.217 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.206 1.206 19 C -0.114 4.114 20 C -0.138 4.138 21 C -0.066 4.066 22 H 0.047 0.953 23 H 0.096 0.904 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.047 0.953 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -17.524 -0.708 -4.637 18.141 hybrid contribution 0.446 1.590 1.871 2.495 sum -17.078 0.882 -2.767 17.323 Atomic orbital electron populations 1.22515 0.85632 1.02921 1.01006 1.61569 1.08817 1.14727 1.41776 1.21923 0.97126 0.89878 0.98394 1.21902 0.95088 0.96783 1.00570 1.21075 0.98104 0.98678 0.95171 1.21972 0.89868 0.95857 0.97360 0.95516 1.68878 1.04441 1.24980 1.21855 1.23667 0.94504 0.93736 0.98792 1.20061 0.91716 0.94244 0.93898 1.21383 1.01590 1.32248 1.01546 0.92404 1.25838 0.96570 0.97268 0.98771 1.70106 1.10136 1.44948 1.30907 0.85505 0.78340 0.78231 0.79585 1.18834 1.20425 1.20588 1.23709 0.97843 1.00114 0.89711 1.20528 0.93598 0.97404 1.02247 1.20966 0.96318 0.98530 0.90748 0.95331 0.90410 0.90536 0.90124 0.95312 0.90733 0.92725 0.91563 0.94311 0.93849 0.93815 0.95188 0.92829 0.92612 0.90944 0.91719 0.91200 0.89612 0.95251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.19 127.69 1.17 1.60 16 2 N -0.54 -11.93 4.48 -938.14 -4.21 -16.14 16 3 C 0.06 1.25 5.18 87.16 0.45 1.70 16 4 C -0.10 -2.65 6.14 31.39 0.19 -2.46 16 5 C -0.09 -2.88 5.07 30.23 0.15 -2.73 16 6 C 0.06 1.99 1.21 44.62 0.05 2.05 16 7 H 0.03 0.99 6.57 -2.39 -0.02 0.97 16 8 N -0.48 -19.89 6.08 -904.14 -5.49 -25.39 16 9 C 0.02 1.08 6.64 83.58 0.55 1.63 16 10 C 0.02 1.04 3.76 -11.20 -0.04 1.00 16 11 C -0.53 -29.50 8.83 25.60 0.23 -29.27 16 12 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 13 C 0.01 0.83 5.46 84.65 0.46 1.29 16 14 N -0.92 -54.82 13.26 21.45 0.28 -54.53 16 15 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 16 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 C 0.01 0.64 5.94 83.58 0.50 1.14 16 20 C -0.10 -2.82 5.05 28.92 0.15 -2.68 16 21 C 0.06 1.44 4.96 83.94 0.42 1.86 16 22 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 23 H 0.08 1.07 8.01 -2.39 -0.02 1.05 16 24 H 0.08 1.07 8.05 -2.39 -0.02 1.05 16 25 H 0.08 1.47 7.49 -2.39 -0.02 1.45 16 26 H 0.03 0.71 6.50 -2.38 -0.02 0.70 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.07 2.04 7.38 -2.38 -0.02 2.02 16 30 H 0.04 1.36 7.43 -2.39 -0.02 1.34 16 31 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.04 2.13 7.58 -2.39 -0.02 2.11 16 33 H 0.03 1.75 8.11 -2.39 -0.02 1.73 16 34 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 35 H 0.06 2.33 7.81 -2.39 -0.02 2.31 16 36 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.06 1.87 6.93 -2.39 -0.02 1.86 16 38 H 0.07 2.01 7.58 -2.38 -0.02 1.99 16 39 H 0.09 1.66 7.74 -2.39 -0.02 1.64 16 40 H 0.03 0.72 7.23 -2.39 -0.02 0.70 16 Total: -1.00 -60.97 303.35 -2.12 -63.09 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.98 Total: 12.22 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 4.28 Total: -24.87 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -9.42 Total: -96.05 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -60.97 -2.12 -63.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254515781.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.150 kcal (2) G-P(sol) polarization free energy of solvation -60.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds