Wall clock time and date at job start Thu Apr 9 2020 12:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46835 * 2 1 4 4 C 1.50700 * 109.47278 * 119.99389 * 2 1 3 5 5 H 1.07993 * 120.00282 * 119.99948 * 4 2 1 6 6 C 1.37879 * 119.99796 * 300.00846 * 4 2 1 7 7 N 1.31511 * 120.00446 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99770 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47238 * 89.99364 * 8 6 4 10 10 H 1.48498 * 109.47073 * 209.99598 * 8 6 4 11 11 H 1.48503 * 109.46974 * 329.99469 * 8 6 4 12 12 N 1.46896 * 109.47423 * 239.99939 * 2 1 3 13 13 C 1.46490 * 111.00516 * 86.92065 * 12 2 1 14 14 H 1.12060 * 105.67334 * 315.23207 * 13 12 2 15 15 C 1.53229 * 112.77393 * 71.53489 * 13 12 2 16 16 C 1.52172 * 113.19160 * 78.85580 * 15 13 12 17 17 C 1.52275 * 111.60262 * 88.86787 * 16 15 13 18 18 C 1.52497 * 111.57701 * 276.70901 * 17 16 15 19 19 N 1.43909 * 110.30019 * 9.41714 * 18 17 16 20 20 C 1.46466 * 111.49594 * 295.48016 * 19 18 17 21 21 C 1.51707 * 112.90031 * 320.64962 * 16 15 13 22 22 C 1.42919 * 117.98469 * 72.54760 * 19 18 17 23 23 H 1.08998 * 109.47002 * 186.09714 * 1 2 3 24 24 H 1.08996 * 109.47495 * 306.09968 * 1 2 3 25 25 H 1.08999 * 109.46797 * 66.10292 * 1 2 3 26 26 H 0.96999 * 120.00354 * 180.02562 * 7 6 4 27 27 H 1.00904 * 110.99910 * 210.87438 * 12 2 1 28 28 H 1.10369 * 109.36084 * 200.83452 * 15 13 12 29 29 H 1.10323 * 109.44039 * 316.74753 * 15 13 12 30 30 H 1.11177 * 106.84090 * 204.12587 * 16 15 13 31 31 H 1.08984 * 108.96155 * 156.33931 * 17 16 15 32 32 H 1.08964 * 109.10389 * 37.28000 * 17 16 15 33 33 H 1.08780 * 109.35598 * 249.23714 * 18 17 16 34 34 H 1.08855 * 109.21609 * 129.29941 * 18 17 16 35 35 H 1.08696 * 110.35819 * 182.76751 * 20 19 18 36 36 H 1.09491 * 109.05549 * 301.84913 * 20 19 18 37 37 H 1.09902 * 108.47958 * 198.60089 * 21 16 15 38 38 H 1.08652 * 110.46662 * 316.07077 * 21 16 15 39 39 H 1.10007 * 108.19549 * 143.94188 * 22 19 18 40 40 H 1.10005 * 108.21374 * 29.31901 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5883 1.1316 6 6 1.6991 -0.2391 2.4827 7 7 0.9433 0.8303 2.6034 8 14 2.3224 -1.1192 4.0081 9 1 3.6304 -0.5435 4.4119 10 1 1.3444 -0.9486 5.1124 11 1 2.4881 -2.5650 3.7124 12 7 2.0197 -0.6925 -1.1994 13 6 2.1255 0.2304 -2.3321 14 1 1.1797 0.8313 -2.3223 15 6 3.2825 1.2236 -2.1819 16 6 4.6376 0.6213 -2.5237 17 6 4.9600 0.7705 -4.0044 18 6 4.3177 -0.3371 -4.8326 19 7 3.4020 -1.0980 -4.0242 20 6 4.0977 -1.8060 -2.9472 21 6 4.7907 -0.8053 -2.0309 22 6 2.1637 -0.4860 -3.6570 23 1 -0.3633 -1.0218 0.1092 24 1 -0.3634 0.6055 0.8303 25 1 -0.3633 0.4163 -0.9396 26 1 0.7092 1.1620 3.4843 27 1 2.9025 -1.1468 -1.0195 28 1 3.1004 2.0983 -2.8300 29 1 3.3054 1.6071 -1.1477 30 1 5.4022 1.2218 -1.9844 31 1 6.0410 0.7308 -4.1371 32 1 4.5925 1.7349 -4.3540 33 1 5.0931 -0.9975 -5.2146 34 1 3.7738 0.1070 -5.6644 35 1 3.3970 -2.4123 -2.3789 36 1 4.8538 -2.4667 -3.3838 37 1 5.8613 -1.0523 -2.0064 38 1 4.4121 -0.8997 -1.0169 39 1 1.3841 -1.2621 -3.6555 40 1 1.8848 0.2267 -4.4472 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254842166.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:47 Heat of formation + Delta-G solvation = 3.370182 kcal Electronic energy + Delta-G solvation = -18607.278031 eV Core-core repulsion = 16035.347488 eV Total energy + Delta-G solvation = -2571.930543 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.39655 -35.80797 -33.19930 -32.89019 -31.00612 -30.50613 -27.32999 -25.24356 -25.12129 -23.59252 -22.92873 -20.19100 -19.16073 -17.95336 -16.74762 -15.85630 -15.76142 -14.85283 -14.65359 -13.89824 -13.64993 -13.43142 -13.05460 -12.60238 -12.36013 -12.30798 -12.18464 -11.94512 -11.42106 -11.30124 -10.94669 -10.80561 -10.59232 -10.40878 -10.28309 -10.14089 -10.12151 -9.94974 -9.88783 -9.68945 -8.76431 -8.47704 -7.63835 -7.14547 -6.02582 -4.08356 3.28346 3.35400 3.39115 4.27752 4.40026 4.83962 4.96283 5.00385 5.22741 5.30244 5.37464 5.46056 5.53000 5.61508 5.66136 5.70015 5.79935 5.88479 6.02961 6.15316 6.20739 6.33046 6.37667 6.41355 6.45283 6.56520 6.58002 6.73888 6.95063 7.18505 7.29566 7.53019 7.62704 7.79838 7.88582 7.94596 8.28339 8.45042 8.74875 9.03993 9.57572 11.04084 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.035243 B = 0.007301 C = 0.006864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.288127 B = 3834.009519 C = 4077.990143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.210 3.790 3 H 0.004 0.996 4 C -0.518 4.518 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.681 5.681 13 C 0.063 3.937 14 H 0.064 0.936 15 C -0.141 4.141 16 C -0.073 4.073 17 C -0.148 4.148 18 C 0.087 3.913 19 N -0.579 5.579 20 C 0.080 3.920 21 C -0.151 4.151 22 C 0.105 3.895 23 H 0.031 0.969 24 H 0.074 0.926 25 H 0.004 0.996 26 H 0.260 0.740 27 H 0.333 0.667 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.413 -0.776 -12.000 13.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.102 3.898 3 H 0.021 0.979 4 C -0.557 4.557 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.721 3.279 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.316 5.316 13 C -0.050 4.050 14 H 0.083 0.917 15 C -0.181 4.181 16 C -0.092 4.092 17 C -0.188 4.188 18 C -0.041 4.041 19 N -0.300 5.300 20 C -0.048 4.048 21 C -0.191 4.191 22 C -0.023 4.023 23 H 0.051 0.949 24 H 0.093 0.907 25 H 0.023 0.977 26 H 0.070 0.930 27 H 0.156 0.844 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.538 -1.161 -12.285 13.525 hybrid contribution 1.387 0.935 1.776 2.440 sum 6.925 -0.226 -10.509 12.587 Atomic orbital electron populations 1.21695 0.98038 1.00002 0.98215 1.19109 0.92412 0.92632 0.85632 0.97877 1.21262 1.31439 1.12402 0.90603 0.92489 1.24905 0.95027 0.94987 0.98967 1.69909 1.36628 1.22892 1.23385 0.86573 0.78464 0.80145 0.82686 1.20835 1.21188 1.19817 1.61095 1.33775 1.30100 1.06580 1.21898 0.96554 0.93201 0.93370 0.91743 1.22436 0.94886 0.98463 1.02316 1.20474 0.97398 0.96180 0.95115 1.22107 1.00512 1.00275 0.95899 1.21186 0.94636 0.93516 0.94783 1.56105 1.07585 1.38559 1.27711 1.21670 0.97170 0.94943 0.90983 1.21895 1.00726 0.95143 1.01306 1.20772 0.89667 0.97508 0.94349 0.94941 0.90689 0.97666 0.92989 0.84403 0.93087 0.91469 0.93078 0.92583 0.92313 0.91454 0.91716 0.89669 0.92030 0.92934 0.90216 0.91141 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.04 9.12 37.16 0.34 -2.70 16 2 C 0.21 5.28 2.36 -68.87 -0.16 5.12 16 3 H 0.00 0.10 6.31 -51.92 -0.33 -0.23 16 4 C -0.52 -14.18 8.59 -34.44 -0.30 -14.48 16 5 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.50 11.39 55.43 0.63 -24.87 16 8 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.68 -14.40 5.80 -101.13 -0.59 -14.99 16 13 C 0.06 1.14 2.06 -68.99 -0.14 0.99 16 14 H 0.06 1.26 7.08 -50.15 -0.36 0.90 16 15 C -0.14 -2.43 5.04 -27.04 -0.14 -2.57 16 16 C -0.07 -1.09 2.37 -92.07 -0.22 -1.31 16 17 C -0.15 -1.86 5.67 -27.36 -0.16 -2.01 16 18 C 0.09 1.06 5.91 -5.68 -0.03 1.03 16 19 N -0.58 -8.27 4.11 -242.09 -0.99 -9.27 16 20 C 0.08 1.16 5.34 -4.39 -0.02 1.13 16 21 C -0.15 -2.30 4.83 -27.71 -0.13 -2.43 16 22 C 0.11 1.64 5.23 -7.10 -0.04 1.60 16 23 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.07 2.04 6.26 -51.93 -0.33 1.71 16 25 H 0.00 0.10 7.21 -51.93 -0.37 -0.27 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.33 6.90 3.15 -39.29 -0.12 6.77 16 28 H 0.05 0.81 7.71 -51.15 -0.39 0.41 16 29 H 0.07 1.35 6.68 -51.17 -0.34 1.01 16 30 H 0.05 0.78 8.26 -50.67 -0.42 0.36 16 31 H 0.06 0.64 8.14 -51.94 -0.42 0.21 16 32 H 0.06 0.72 7.63 -51.95 -0.40 0.32 16 33 H 0.07 0.75 8.08 -52.05 -0.42 0.32 16 34 H 0.06 0.73 7.92 -52.01 -0.41 0.32 16 35 H 0.08 1.36 6.91 -52.10 -0.36 1.00 16 36 H 0.06 0.79 8.15 -51.65 -0.42 0.37 16 37 H 0.05 0.71 8.22 -51.42 -0.42 0.29 16 38 H 0.08 1.42 5.91 -52.12 -0.31 1.11 16 39 H 0.07 1.17 8.23 -51.36 -0.42 0.75 16 40 H 0.05 0.76 7.84 -51.36 -0.40 0.36 16 LS Contribution 287.73 15.07 4.34 4.34 Total: -1.00 -27.82 287.73 -9.33 -37.15 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.61 Total: 5.31 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -1.09 Total: -13.98 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -0.95 Total: -49.12 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.82 -9.33 -37.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254842166.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.524 kcal (2) G-P(sol) polarization free energy of solvation -27.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds