Wall clock time and date at job start Thu Apr 9 2020 12:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72489 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.71985 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72245 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.47248 * 180.02562 * 10 9 7 12 12 C 1.46898 * 110.99888 * 179.97438 * 11 10 9 13 13 H 1.08993 * 108.91659 * 326.30560 * 12 11 10 14 14 C 1.52878 * 108.93360 * 207.69628 * 12 11 10 15 15 C 1.53049 * 109.10030 * 175.26911 * 14 12 11 16 16 C 1.52219 * 110.31765 * 93.71410 * 15 14 12 17 17 C 1.51486 * 113.31432 * 288.04752 * 16 15 14 18 18 N 1.46945 * 111.82689 * 352.76309 * 17 16 15 19 19 C 1.44456 * 113.46276 * 311.25013 * 18 17 16 20 20 C 1.51831 * 109.08871 * 328.68873 * 15 14 12 21 21 C 1.47122 * 110.01156 * 84.08585 * 18 17 16 22 22 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 24 24 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 25 25 H 1.09004 * 109.46930 * 299.99899 * 10 9 7 26 26 H 1.09000 * 109.47312 * 59.99955 * 10 9 7 27 27 H 1.00901 * 110.99330 * 303.94962 * 11 10 9 28 28 H 1.09004 * 109.53172 * 295.15877 * 14 12 11 29 29 H 1.09005 * 109.52988 * 55.37980 * 14 12 11 30 30 H 1.09008 * 108.13681 * 211.87740 * 15 14 12 31 31 H 1.09008 * 108.71074 * 167.06306 * 16 15 14 32 32 H 1.08998 * 108.71777 * 49.03998 * 16 15 14 33 33 H 1.09002 * 109.01045 * 232.16325 * 17 16 15 34 34 H 1.08998 * 108.94664 * 113.32853 * 17 16 15 35 35 H 1.09001 * 108.86290 * 182.65236 * 19 18 17 36 36 H 1.08998 * 108.86683 * 301.06421 * 19 18 17 37 37 H 1.09004 * 108.97829 * 205.69589 * 20 15 14 38 38 H 1.09003 * 108.97611 * 324.47371 * 20 15 14 39 39 H 1.09001 * 109.24049 * 144.61730 * 21 18 17 40 40 H 1.08998 * 109.20992 * 25.20014 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1081 1.6933 -1.2091 5 1 1.2844 2.7464 -0.0068 6 1 3.0980 1.6992 1.2159 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2450 -3.6621 0.0134 11 7 1.5104 -4.9343 0.0128 12 6 2.4348 -6.0760 0.0194 13 1 3.3264 -5.8120 -0.5491 14 6 1.7549 -7.2687 -0.6533 15 6 2.7545 -8.4232 -0.7547 16 6 2.6129 -9.3517 0.4431 17 6 3.1364 -8.7519 1.7319 18 7 3.8193 -7.4714 1.5007 19 6 4.7864 -7.5207 0.4288 20 6 4.1541 -7.8559 -0.9118 21 6 2.8364 -6.3776 1.4555 22 1 -0.4851 -0.8400 -0.0004 23 1 0.6205 -2.5547 0.8933 24 1 0.6280 -2.5591 -0.8867 25 1 2.8757 -3.6068 -0.8739 26 1 2.8676 -3.6021 0.9061 27 1 0.8702 -4.9825 0.7912 28 1 0.8961 -7.5812 -0.0592 29 1 1.4243 -6.9839 -1.6522 30 1 2.5254 -8.9922 -1.6558 31 1 3.1596 -10.2723 0.2385 32 1 1.5587 -9.5957 0.5739 33 1 3.8371 -9.4502 2.1897 34 1 2.3004 -8.5906 2.4125 35 1 5.2788 -6.5511 0.3536 36 1 5.5353 -8.2768 0.6642 37 1 4.7779 -8.5880 -1.4246 38 1 4.1035 -6.9494 -1.5150 39 1 3.2728 -5.4839 1.9017 40 1 1.9517 -6.6668 2.0226 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254847393.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:49 Heat of formation + Delta-G solvation = -9.873398 kcal Electronic energy + Delta-G solvation = -17739.783644 eV Core-core repulsion = 15167.278817 eV Total energy + Delta-G solvation = -2572.504828 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.76329 -36.13647 -33.64843 -33.39750 -31.51962 -30.88256 -27.84934 -25.37545 -24.34496 -23.40466 -22.98349 -20.98059 -20.02549 -18.07381 -16.78911 -16.65643 -16.19326 -15.51530 -14.50145 -13.99431 -13.75848 -13.67639 -13.41779 -13.27012 -13.03790 -12.69648 -12.66009 -12.31895 -11.95131 -11.77936 -11.25717 -11.05687 -10.84444 -10.67424 -10.50258 -10.33614 -10.19327 -10.14461 -10.09888 -9.66555 -8.61490 -8.46818 -8.29329 -7.61980 -6.33894 -4.02646 3.45402 3.47642 3.66329 3.87067 4.42835 4.52600 4.57622 4.69030 4.84841 5.01851 5.03487 5.15196 5.22495 5.24991 5.40886 5.44022 5.49027 5.53548 5.69513 5.76455 5.87536 5.89074 5.95110 6.02411 6.06061 6.12029 6.23129 6.25626 6.36903 6.42414 6.83890 7.04313 7.27228 7.32900 7.51691 7.70632 7.86939 8.26680 8.48732 8.91136 9.69823 11.07240 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.047314 B = 0.004702 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.651078 B = 5953.180502 C = 6097.452073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.015 3.985 3 Si 1.069 2.931 4 H -0.288 1.288 5 H -0.282 1.282 6 H -0.288 1.288 7 C -0.603 4.603 8 H 0.047 0.953 9 C 0.012 3.988 10 C 0.074 3.926 11 N -0.688 5.688 12 C 0.052 3.948 13 H 0.080 0.920 14 C -0.101 4.101 15 C -0.083 4.083 16 C -0.142 4.142 17 C 0.066 3.934 18 N -0.557 5.557 19 C 0.079 3.921 20 C -0.152 4.152 21 C 0.043 3.957 22 H 0.269 0.731 23 H 0.004 0.996 24 H 0.015 0.985 25 H 0.057 0.943 26 H 0.018 0.982 27 H 0.334 0.666 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.884 -18.986 1.132 20.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.188 4.188 3 Si 0.897 3.103 4 H -0.215 1.215 5 H -0.207 1.207 6 H -0.215 1.215 7 C -0.642 4.642 8 H 0.065 0.935 9 C -0.025 4.025 10 C -0.054 4.054 11 N -0.317 5.317 12 C -0.059 4.059 13 H 0.098 0.902 14 C -0.139 4.139 15 C -0.103 4.103 16 C -0.181 4.181 17 C -0.062 4.062 18 N -0.279 5.279 19 C -0.050 4.050 20 C -0.191 4.191 21 C -0.085 4.085 22 H 0.080 0.920 23 H 0.022 0.978 24 H 0.034 0.966 25 H 0.076 0.924 26 H 0.036 0.964 27 H 0.151 0.849 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.879 -17.230 0.806 18.569 hybrid contribution 0.073 -1.844 0.157 1.852 sum 6.951 -19.074 0.963 20.324 Atomic orbital electron populations 1.70768 1.06875 1.30676 1.46555 1.25839 0.96549 1.02669 0.93781 0.83545 0.74879 0.75352 0.76479 1.21457 1.20745 1.21485 1.21993 0.94207 0.92029 1.55937 0.93459 1.19194 0.94674 0.92289 0.96347 1.22032 0.96636 0.88049 0.98706 1.60729 1.19267 1.02034 1.49716 1.22209 0.96144 0.91918 0.95648 0.90220 1.21648 0.97266 0.93539 1.01473 1.20580 0.95329 0.96439 0.97953 1.21664 1.01624 0.98785 0.96028 1.21815 0.97770 0.90685 0.95976 1.59543 1.19605 1.03899 1.44834 1.21147 0.93869 1.02053 0.87899 1.21908 0.96327 1.01482 0.99417 1.22771 0.94303 0.94229 0.97228 0.92031 0.97768 0.96637 0.92437 0.96385 0.84883 0.92188 0.91106 0.91643 0.92354 0.91837 0.91399 0.91297 0.91075 0.91180 0.92217 0.91134 0.90953 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.51 13.65 55.43 0.76 -27.75 16 2 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 3 Si 1.07 25.69 29.90 -169.99 -5.08 20.61 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.60 -17.57 9.11 -34.44 -0.31 -17.89 16 8 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 9 C 0.01 0.33 4.54 -27.88 -0.13 0.20 16 10 C 0.07 1.59 5.40 -3.82 -0.02 1.57 16 11 N -0.69 -12.29 6.21 -107.25 -0.67 -12.95 16 12 C 0.05 0.76 2.00 -68.21 -0.14 0.63 16 13 H 0.08 1.25 4.86 -51.93 -0.25 0.99 16 14 C -0.10 -1.30 5.19 -26.77 -0.14 -1.44 16 15 C -0.08 -0.90 2.78 -91.59 -0.25 -1.15 16 16 C -0.14 -1.36 5.34 -27.90 -0.15 -1.51 16 17 C 0.07 0.67 5.95 -4.57 -0.03 0.64 16 18 N -0.56 -6.76 4.62 -238.61 -1.10 -7.86 16 19 C 0.08 0.88 5.37 -5.66 -0.03 0.85 16 20 C -0.15 -1.63 5.16 -27.85 -0.14 -1.78 16 21 C 0.04 0.59 5.27 -4.14 -0.02 0.57 16 22 H 0.27 8.41 7.22 -40.82 -0.29 8.11 16 23 H 0.00 0.11 8.00 -51.93 -0.42 -0.30 16 24 H 0.02 0.43 8.01 -51.93 -0.42 0.02 16 25 H 0.06 1.27 8.04 -51.93 -0.42 0.85 16 26 H 0.02 0.39 7.32 -51.93 -0.38 0.01 16 27 H 0.33 5.77 8.45 -39.29 -0.33 5.44 16 28 H 0.06 0.76 7.63 -51.93 -0.40 0.36 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 31 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.06 0.58 7.84 -51.93 -0.41 0.18 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.69 7.29 -51.93 -0.38 0.31 16 35 H 0.07 0.84 8.06 -51.93 -0.42 0.43 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.84 6.31 -51.93 -0.33 0.51 16 39 H 0.07 1.11 7.30 -51.93 -0.38 0.73 16 40 H 0.07 0.90 7.18 -51.93 -0.37 0.52 16 LS Contribution 297.38 15.07 4.48 4.48 Total: -1.00 -30.56 297.38 -10.00 -40.56 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.93 Total: 1.86 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -1.46 Total: -18.94 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -1.01 Total: -48.57 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.08 Total: 20.61 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.56 -10.00 -40.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254847393.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.688 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds