Wall clock time and date at job start Thu Apr 9 2020 12:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50706 * 120.00217 * 2 1 4 4 N 1.46902 * 109.46946 * 124.99904 * 3 2 1 5 5 C 1.46955 * 110.99696 * 190.00080 * 4 3 2 6 6 C 1.53048 * 109.36386 * 183.18742 * 5 4 3 7 7 N 1.46951 * 109.36859 * 301.60140 * 6 5 4 8 8 C 1.46902 * 111.00458 * 183.18587 * 7 6 5 9 9 H 1.08999 * 109.47046 * 186.12915 * 8 7 6 10 10 C 1.50692 * 109.46994 * 306.13312 * 8 7 6 11 11 H 1.08005 * 120.00323 * 359.72525 * 10 8 7 12 12 C 1.37883 * 119.99984 * 179.97438 * 10 8 7 13 13 N 1.31513 * 119.99955 * 359.72832 * 12 10 8 14 14 Si 1.86796 * 120.00003 * 179.72660 * 12 10 8 15 15 H 1.48500 * 109.47519 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47279 * 120.00292 * 14 12 10 17 17 H 1.48505 * 109.47038 * 240.00437 * 14 12 10 18 18 C 1.53002 * 109.46831 * 66.13622 * 8 7 6 19 19 C 1.52996 * 109.47464 * 63.30055 * 18 8 7 20 20 C 1.46960 * 110.87856 * 59.31564 * 7 6 5 21 21 C 1.46955 * 110.99951 * 313.80009 * 4 3 2 22 22 H 1.08003 * 119.99905 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.00419 * 179.97438 * 1 2 3 24 24 H 1.08003 * 119.99905 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47132 * 4.99929 * 3 2 1 26 26 H 1.09001 * 109.47130 * 244.99794 * 3 2 1 27 27 H 1.09000 * 109.49202 * 63.22148 * 5 4 3 28 28 H 1.08999 * 109.48862 * 303.15326 * 5 4 3 29 29 H 1.09000 * 109.49253 * 181.62756 * 6 5 4 30 30 H 1.09004 * 109.50691 * 61.57986 * 6 5 4 31 31 H 0.97000 * 120.00437 * 179.97438 * 13 12 10 32 32 H 1.08997 * 109.46791 * 183.30107 * 18 8 7 33 33 H 1.09005 * 109.46837 * 303.29593 * 18 8 7 34 34 H 1.09007 * 109.46772 * 304.75603 * 19 18 8 35 35 H 1.09000 * 109.47331 * 64.75523 * 19 18 8 36 36 H 1.08997 * 109.47060 * 184.75807 * 19 18 8 37 37 H 1.09001 * 109.48785 * 60.65698 * 20 7 6 38 38 H 1.09008 * 109.48685 * 180.71277 * 20 7 6 39 39 H 1.08997 * 109.48900 * 296.77880 * 21 4 3 40 40 H 1.09000 * 109.49237 * 56.82480 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3319 1.1346 5 6 3.5749 2.6715 1.3090 6 6 4.5977 2.6381 2.4470 7 7 3.9393 2.1872 3.6810 8 6 4.8721 2.2140 4.8155 9 1 4.3930 1.7743 5.6903 10 6 6.1074 1.4237 4.4689 11 1 6.1894 0.9453 3.5041 12 6 7.1310 1.3071 5.3854 13 7 7.0314 1.8901 6.5601 14 14 8.6590 0.3211 4.9586 15 1 8.5254 -0.2296 3.5860 16 1 9.8517 1.2035 5.0234 17 1 8.8150 -0.7940 5.9268 18 6 5.2617 3.6617 5.1213 19 6 4.0197 4.4439 5.5529 20 6 3.3606 0.8477 3.5065 21 6 2.3377 0.8810 2.3685 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5401 -0.9353 -0.0004 24 1 1.8499 -0.9353 0.0004 25 1 1.3586 2.1317 0.0896 26 1 2.6213 1.4026 -0.9314 27 1 2.7836 3.3806 1.5519 28 1 4.0675 2.9778 0.3862 29 1 5.0072 3.6371 2.5974 30 1 5.4034 1.9496 2.1922 31 1 7.7512 1.8078 7.2050 32 1 5.9985 3.6777 5.9244 33 1 5.6875 4.1196 4.2284 34 1 3.2508 4.3572 4.7851 35 1 3.6430 4.0384 6.4918 36 1 4.2805 5.4935 5.6890 37 1 4.1520 0.1385 3.2636 38 1 2.8681 0.5413 4.4294 39 1 1.5324 1.5698 2.6235 40 1 1.9280 -0.1178 2.2180 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172557.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:57 Heat of formation + Delta-G solvation = 29.397734 kcal Electronic energy + Delta-G solvation = -17969.564144 eV Core-core repulsion = 15398.762240 eV Total energy + Delta-G solvation = -2570.801904 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.90309 -36.33408 -33.75112 -32.08445 -31.12433 -30.09678 -27.68044 -25.77811 -23.60902 -23.04571 -22.25912 -19.84377 -19.46906 -18.80326 -16.39269 -15.89844 -15.10447 -14.74913 -14.35588 -14.16921 -14.03470 -13.48240 -13.27277 -12.88510 -12.53777 -12.14240 -11.87195 -11.63115 -11.35838 -11.26588 -11.05522 -10.80681 -10.67681 -10.50030 -10.35251 -10.25470 -9.79722 -9.61000 -9.39474 -9.30419 -9.02900 -8.33450 -8.00105 -7.06370 -5.95462 -4.08228 2.21829 3.28165 3.36890 3.41384 4.27886 4.43058 4.89068 5.08333 5.15709 5.29091 5.48055 5.56467 5.63173 5.72270 5.84399 5.96062 6.01672 6.03918 6.21200 6.31031 6.43199 6.49802 6.56238 6.64886 6.65527 6.72469 6.83243 6.93238 7.12641 7.20005 7.36102 7.39377 7.46124 7.64901 7.80354 8.02608 8.19990 8.36342 8.51267 9.02550 9.59269 11.03754 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.027190 B = 0.006940 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.539615 B = 4033.475420 C = 4579.504837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.140 4.140 3 C 0.079 3.921 4 N -0.534 5.534 5 C 0.058 3.942 6 C 0.063 3.937 7 N -0.536 5.536 8 C 0.213 3.787 9 H 0.037 0.963 10 C -0.540 4.540 11 H 0.059 0.941 12 C 0.067 3.933 13 N -0.887 5.887 14 Si 0.886 3.114 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.285 1.285 18 C -0.110 4.110 19 C -0.139 4.139 20 C 0.064 3.936 21 C 0.061 3.939 22 H 0.093 0.907 23 H 0.097 0.903 24 H 0.113 0.887 25 H 0.033 0.967 26 H 0.079 0.921 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.260 0.740 32 H 0.092 0.908 33 H 0.032 0.968 34 H 0.049 0.951 35 H 0.037 0.963 36 H 0.024 0.976 37 H 0.044 0.956 38 H 0.065 0.935 39 H 0.031 0.969 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.206 -0.155 -9.474 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.158 4.158 3 C -0.048 4.048 4 N -0.259 5.259 5 C -0.070 4.070 6 C -0.065 4.065 7 N -0.260 5.260 8 C 0.107 3.893 9 H 0.054 0.946 10 C -0.579 4.579 11 H 0.077 0.923 12 C -0.135 4.135 13 N -0.526 5.526 14 Si 0.714 3.286 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.148 4.148 19 C -0.196 4.196 20 C -0.065 4.065 21 C -0.067 4.067 22 H 0.111 0.889 23 H 0.115 0.885 24 H 0.131 0.869 25 H 0.051 0.949 26 H 0.097 0.903 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.050 0.950 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.098 -0.115 -9.288 13.001 hybrid contribution 0.928 -0.596 -0.152 1.113 sum -8.169 -0.711 -9.439 12.504 Atomic orbital electron populations 1.23805 0.95869 1.01656 1.02398 1.22929 0.95629 0.98887 0.98362 1.21262 0.93949 0.94262 0.95366 1.62248 1.33200 1.26276 1.04207 1.22257 0.97611 0.88228 0.98877 1.21962 0.94750 1.00890 0.88948 1.62625 1.35700 1.22831 1.04863 1.19256 0.88838 0.93108 0.88096 0.94559 1.21804 1.02848 1.32120 1.01115 0.92265 1.24910 0.98228 0.95408 0.94919 1.69884 1.32942 1.43560 1.06179 0.86631 0.83408 0.80057 0.78470 1.19886 1.21062 1.21097 1.21587 0.96764 0.95529 1.00952 1.21720 1.00015 0.97647 1.00252 1.21919 0.96383 0.92276 0.95949 1.22215 0.95868 0.99199 0.89374 0.88884 0.88480 0.86882 0.94855 0.90315 0.94906 0.91486 0.90956 0.93286 0.93027 0.88998 0.94949 0.93238 0.94378 0.95673 0.93729 0.91631 0.95023 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.05 14.32 29.02 0.42 -1.63 16 2 C -0.14 -1.63 7.60 -36.02 -0.27 -1.91 16 3 C 0.08 1.02 5.73 -4.97 -0.03 0.99 16 4 N -0.53 -8.54 4.85 -235.91 -1.14 -9.68 16 5 C 0.06 0.96 5.58 -3.77 -0.02 0.94 16 6 C 0.06 1.25 4.96 -3.77 -0.02 1.23 16 7 N -0.54 -11.34 3.96 -227.88 -0.90 -12.25 16 8 C 0.21 5.24 1.73 -68.87 -0.12 5.12 16 9 H 0.04 0.99 8.03 -51.93 -0.42 0.58 16 10 C -0.54 -14.42 7.17 -34.44 -0.25 -14.66 16 11 H 0.06 1.62 5.80 -52.48 -0.30 1.31 16 12 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 13 N -0.89 -24.93 11.29 55.43 0.63 -24.31 16 14 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 15 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 18 C -0.11 -2.60 5.12 -26.73 -0.14 -2.74 16 19 C -0.14 -2.84 9.85 37.16 0.37 -2.48 16 20 C 0.06 1.26 5.37 -3.77 -0.02 1.24 16 21 C 0.06 1.01 5.19 -3.77 -0.02 0.99 16 22 H 0.09 0.91 7.84 -52.48 -0.41 0.50 16 23 H 0.10 0.86 8.06 -52.49 -0.42 0.44 16 24 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 25 H 0.03 0.42 7.73 -51.93 -0.40 0.02 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.45 6.27 -51.93 -0.33 1.12 16 30 H 0.05 1.09 6.25 -51.93 -0.32 0.76 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.09 2.44 5.98 -51.93 -0.31 2.13 16 33 H 0.03 0.75 6.35 -51.93 -0.33 0.42 16 34 H 0.05 0.98 7.57 -51.92 -0.39 0.59 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.04 0.98 7.21 -51.93 -0.37 0.60 16 38 H 0.07 1.28 8.07 -51.92 -0.42 0.86 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 1.06 6.62 -51.93 -0.34 0.72 16 LS Contribution 305.87 15.07 4.61 4.61 Total: -1.00 -27.34 305.87 -8.90 -36.24 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -6.87 Total: 0.31 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -0.20 Total: -11.16 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -1.42 Total: -46.24 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.34 -8.90 -36.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172557.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.637 kcal (2) G-P(sol) polarization free energy of solvation -27.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds