Wall clock time and date at job start Thu Apr 9 2020 12:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50706 * 120.00217 * 2 1 4 4 N 1.46902 * 109.46946 * 124.99904 * 3 2 1 5 5 C 1.46955 * 110.99696 * 190.00080 * 4 3 2 6 6 C 1.53048 * 109.36386 * 183.18742 * 5 4 3 7 7 N 1.46951 * 109.36859 * 301.60140 * 6 5 4 8 8 C 1.46902 * 111.00458 * 183.18587 * 7 6 5 9 9 H 1.08999 * 109.47046 * 186.12915 * 8 7 6 10 10 C 1.50692 * 109.46994 * 306.13312 * 8 7 6 11 11 H 1.08005 * 120.00323 * 359.72525 * 10 8 7 12 12 C 1.37883 * 119.99984 * 179.97438 * 10 8 7 13 13 N 1.31513 * 119.99955 * 359.72832 * 12 10 8 14 14 Si 1.86796 * 120.00003 * 179.72660 * 12 10 8 15 15 H 1.48500 * 109.47519 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47279 * 120.00292 * 14 12 10 17 17 H 1.48505 * 109.47038 * 240.00437 * 14 12 10 18 18 C 1.53002 * 109.46831 * 66.13622 * 8 7 6 19 19 C 1.52996 * 109.47464 * 63.30055 * 18 8 7 20 20 C 1.46960 * 110.87856 * 59.31564 * 7 6 5 21 21 C 1.46955 * 110.99951 * 313.80009 * 4 3 2 22 22 H 1.08003 * 119.99905 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.00419 * 179.97438 * 1 2 3 24 24 H 1.08003 * 119.99905 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47132 * 4.99929 * 3 2 1 26 26 H 1.09001 * 109.47130 * 244.99794 * 3 2 1 27 27 H 1.09000 * 109.49202 * 63.22148 * 5 4 3 28 28 H 1.08999 * 109.48862 * 303.15326 * 5 4 3 29 29 H 1.09000 * 109.49253 * 181.62756 * 6 5 4 30 30 H 1.09004 * 109.50691 * 61.57986 * 6 5 4 31 31 H 0.97000 * 120.00437 * 179.97438 * 13 12 10 32 32 H 1.08997 * 109.46791 * 183.30107 * 18 8 7 33 33 H 1.09005 * 109.46837 * 303.29593 * 18 8 7 34 34 H 1.09007 * 109.46772 * 304.75603 * 19 18 8 35 35 H 1.09000 * 109.47331 * 64.75523 * 19 18 8 36 36 H 1.08997 * 109.47060 * 184.75807 * 19 18 8 37 37 H 1.09001 * 109.48785 * 60.65698 * 20 7 6 38 38 H 1.09008 * 109.48685 * 180.71277 * 20 7 6 39 39 H 1.08997 * 109.48900 * 296.77880 * 21 4 3 40 40 H 1.09000 * 109.49237 * 56.82480 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3319 1.1346 5 6 3.5749 2.6715 1.3090 6 6 4.5977 2.6381 2.4470 7 7 3.9393 2.1872 3.6810 8 6 4.8721 2.2140 4.8155 9 1 4.3930 1.7743 5.6903 10 6 6.1074 1.4237 4.4689 11 1 6.1894 0.9453 3.5041 12 6 7.1310 1.3071 5.3854 13 7 7.0314 1.8901 6.5601 14 14 8.6590 0.3211 4.9586 15 1 8.5254 -0.2296 3.5860 16 1 9.8517 1.2035 5.0234 17 1 8.8150 -0.7940 5.9268 18 6 5.2617 3.6617 5.1213 19 6 4.0197 4.4439 5.5529 20 6 3.3606 0.8477 3.5065 21 6 2.3377 0.8810 2.3685 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5401 -0.9353 -0.0004 24 1 1.8499 -0.9353 0.0004 25 1 1.3586 2.1317 0.0896 26 1 2.6213 1.4026 -0.9314 27 1 2.7836 3.3806 1.5519 28 1 4.0675 2.9778 0.3862 29 1 5.0072 3.6371 2.5974 30 1 5.4034 1.9496 2.1922 31 1 7.7512 1.8078 7.2050 32 1 5.9985 3.6777 5.9244 33 1 5.6875 4.1196 4.2284 34 1 3.2508 4.3572 4.7851 35 1 3.6430 4.0384 6.4918 36 1 4.2805 5.4935 5.6890 37 1 4.1520 0.1385 3.2636 38 1 2.8681 0.5413 4.4294 39 1 1.5324 1.5698 2.6235 40 1 1.9280 -0.1178 2.2180 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172557.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:57 Heat of formation + Delta-G solvation = 12.244357 kcal Electronic energy + Delta-G solvation = -17970.307970 eV Core-core repulsion = 15398.762240 eV Total energy + Delta-G solvation = -2571.545730 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.37038 -37.84113 -35.18147 -33.79160 -32.78414 -31.57266 -29.26572 -27.44535 -25.17710 -24.54213 -23.86634 -21.39584 -20.55003 -20.49692 -18.27474 -17.42120 -16.62259 -16.15740 -15.90644 -15.57563 -15.47244 -15.13358 -14.70577 -14.56454 -13.78580 -13.75233 -13.42593 -13.21987 -13.04912 -12.75917 -12.66714 -12.44218 -12.30271 -12.14863 -11.97791 -11.70068 -11.59956 -11.48917 -11.08623 -10.92982 -10.42446 -10.26428 -9.24177 -8.89845 -8.02296 -6.24179 1.35390 1.37653 1.38737 1.48752 2.40733 3.08067 3.15818 3.43947 3.95777 4.10791 4.23314 4.30000 4.41637 4.51698 4.56340 4.63704 4.70863 4.76011 4.77812 4.82832 4.91779 4.92052 5.07060 5.12512 5.15882 5.26363 5.31184 5.43137 5.51786 5.65222 5.73205 5.76950 5.80190 6.05931 6.14678 6.19878 6.26283 6.42578 6.67565 6.96991 7.46381 8.92831 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.027190 B = 0.006940 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.539615 B = 4033.475420 C = 4579.504837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.082 3.918 4 N -0.550 5.550 5 C 0.068 3.932 6 C 0.067 3.933 7 N -0.530 5.530 8 C 0.219 3.781 9 H 0.002 0.998 10 C -0.547 4.547 11 H 0.047 0.953 12 C 0.022 3.978 13 N -0.911 5.911 14 Si 0.945 3.055 15 H -0.275 1.275 16 H -0.279 1.279 17 H -0.281 1.281 18 C -0.104 4.104 19 C -0.126 4.126 20 C 0.064 3.936 21 C 0.076 3.924 22 H 0.100 0.900 23 H 0.112 0.888 24 H 0.110 0.890 25 H 0.041 0.959 26 H 0.088 0.912 27 H 0.039 0.961 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.020 0.980 31 H 0.261 0.739 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.056 0.944 35 H 0.032 0.968 36 H 0.046 0.954 37 H 0.016 0.984 38 H 0.061 0.939 39 H 0.035 0.965 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.378 0.001 -11.014 15.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.179 4.179 3 C -0.044 4.044 4 N -0.275 5.275 5 C -0.060 4.060 6 C -0.062 4.062 7 N -0.254 5.254 8 C 0.112 3.888 9 H 0.020 0.980 10 C -0.586 4.586 11 H 0.066 0.934 12 C -0.178 4.178 13 N -0.551 5.551 14 Si 0.772 3.228 15 H -0.200 1.200 16 H -0.205 1.205 17 H -0.207 1.207 18 C -0.143 4.143 19 C -0.183 4.183 20 C -0.065 4.065 21 C -0.052 4.052 22 H 0.118 0.882 23 H 0.130 0.870 24 H 0.128 0.872 25 H 0.059 0.941 26 H 0.106 0.894 27 H 0.058 0.942 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.035 0.965 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.283 0.040 -10.844 14.944 hybrid contribution 1.245 -0.667 0.305 1.445 sum -9.038 -0.627 -10.539 13.898 Atomic orbital electron populations 1.24003 0.95388 1.02750 0.99773 1.22853 0.96120 0.98179 1.00729 1.21292 0.93691 0.95267 0.94164 1.62207 1.34573 1.25932 1.04766 1.22135 0.96899 0.88854 0.98120 1.21940 0.95141 0.99613 0.89491 1.62595 1.34556 1.23646 1.04650 1.19038 0.88392 0.93192 0.88198 0.98015 1.21983 1.03848 1.32233 1.00565 0.93436 1.25581 1.00838 0.96414 0.94919 1.70001 1.33731 1.44482 1.06853 0.85709 0.80313 0.78804 0.78005 1.19989 1.20467 1.20714 1.21422 0.97562 0.95466 0.99825 1.21572 0.98426 0.98325 1.00017 1.21944 0.96368 0.90769 0.97414 1.22031 0.94446 1.00337 0.88392 0.88179 0.86987 0.87234 0.94073 0.89410 0.94235 0.89339 0.91386 0.96185 0.92959 0.91957 0.94998 0.92463 0.94925 0.93449 0.96535 0.92096 0.94667 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 14.32 67.79 0.97 -2.16 16 2 C -0.16 -3.33 7.60 25.66 0.19 -3.13 16 3 C 0.08 1.90 5.73 85.56 0.49 2.39 16 4 N -0.55 -16.55 4.85 -900.29 -4.37 -20.92 16 5 C 0.07 2.10 5.58 86.31 0.48 2.58 16 6 C 0.07 2.64 4.96 86.31 0.43 3.07 16 7 N -0.53 -22.65 3.96 -874.87 -3.46 -26.12 16 8 C 0.22 11.07 1.73 44.17 0.08 11.14 16 9 H 0.00 0.11 8.03 -2.39 -0.02 0.09 16 10 C -0.55 -30.07 7.17 25.60 0.18 -29.89 16 11 H 0.05 2.68 5.80 -2.91 -0.02 2.67 16 12 C 0.02 1.23 5.30 84.66 0.45 1.68 16 13 N -0.91 -52.35 11.29 21.45 0.24 -52.11 16 14 Si 0.95 44.31 29.54 68.60 2.03 46.34 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 C -0.10 -5.00 5.12 30.59 0.16 -4.85 16 19 C -0.13 -5.06 9.85 71.98 0.71 -4.35 16 20 C 0.06 2.56 5.37 86.31 0.46 3.02 16 21 C 0.08 2.39 5.19 86.31 0.45 2.84 16 22 H 0.10 1.60 7.84 -2.91 -0.02 1.58 16 23 H 0.11 1.61 8.06 -2.91 -0.02 1.58 16 24 H 0.11 2.35 8.06 -2.91 -0.02 2.32 16 25 H 0.04 0.90 7.73 -2.39 -0.02 0.88 16 26 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.07 2.71 6.27 -2.39 -0.01 2.69 16 30 H 0.02 0.90 6.25 -2.39 -0.01 0.89 16 31 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 32 H 0.06 3.38 5.98 -2.39 -0.01 3.37 16 33 H 0.03 1.49 6.35 -2.38 -0.02 1.48 16 34 H 0.06 2.19 7.57 -2.38 -0.02 2.17 16 35 H 0.03 1.31 8.14 -2.39 -0.02 1.30 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.02 0.74 7.21 -2.39 -0.02 0.72 16 38 H 0.06 2.43 8.07 -2.38 -0.02 2.41 16 39 H 0.04 1.09 8.14 -2.39 -0.02 1.08 16 40 H 0.09 2.45 6.62 -2.39 -0.02 2.43 16 Total: -1.00 -59.17 305.87 0.47 -58.70 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.98 Total: 11.76 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 5.05 Total: -17.65 kcal Atomic # 7 Polarization: -91.56 SS G_CDS: -7.59 Total: -99.15 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -59.17 0.47 -58.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172557.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.949 kcal (2) G-P(sol) polarization free energy of solvation -59.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds