Wall clock time and date at job start Thu Apr 9 2020 12:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46942 * 2 1 4 4 H 1.08999 * 109.47193 * 302.76534 * 3 2 1 5 5 C 1.50695 * 109.47100 * 182.76435 * 3 2 1 6 6 H 1.08002 * 120.00059 * 239.99799 * 5 3 2 7 7 C 1.37881 * 120.00284 * 60.00045 * 5 3 2 8 8 N 1.31518 * 119.99333 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00424 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47101 * 59.99970 * 9 7 5 11 11 H 1.48505 * 109.47202 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47050 * 299.99884 * 9 7 5 13 13 N 1.46905 * 109.47093 * 62.76721 * 3 2 1 14 14 C 1.48558 * 110.99974 * 176.31020 * 13 3 2 15 15 C 1.54234 * 104.55029 * 200.45472 * 14 13 3 16 16 H 1.08999 * 112.70587 * 262.18594 * 15 14 13 17 17 C 1.54417 * 108.97980 * 136.84616 * 15 14 13 18 18 C 1.54915 * 102.98414 * 225.54811 * 17 15 14 19 19 N 1.48464 * 103.21533 * 37.78852 * 18 17 15 20 20 C 1.46902 * 110.99736 * 200.05704 * 19 18 17 21 21 C 1.47884 * 106.03513 * 320.70507 * 19 18 17 22 22 H 1.09004 * 111.76062 * 262.40519 * 21 19 18 23 23 C 1.48490 * 111.00184 * 60.90163 * 13 3 2 24 24 H 1.08998 * 109.46991 * 294.61099 * 1 2 3 25 25 H 1.08999 * 109.47286 * 54.61663 * 1 2 3 26 26 H 1.09004 * 109.46887 * 174.61342 * 1 2 3 27 27 H 1.08998 * 109.46825 * 239.99907 * 2 1 3 28 28 H 1.08999 * 109.47169 * 120.00082 * 2 1 3 29 29 H 0.97000 * 119.99531 * 179.97438 * 8 7 5 30 30 H 1.09003 * 110.41829 * 81.68609 * 14 13 3 31 31 H 1.09002 * 110.41853 * 319.21966 * 14 13 3 32 32 H 1.08996 * 110.71337 * 343.92305 * 17 15 14 33 33 H 1.09005 * 110.70692 * 107.00027 * 17 15 14 34 34 H 1.08996 * 110.66393 * 156.22315 * 18 17 15 35 35 H 1.09002 * 110.66698 * 279.19184 * 18 17 15 36 36 H 1.09000 * 109.47056 * 59.87641 * 20 19 18 37 37 H 1.08999 * 109.46956 * 179.87702 * 20 19 18 38 38 H 1.08996 * 109.47230 * 299.87677 * 20 19 18 39 39 H 1.09005 * 110.36727 * 40.05599 * 23 13 3 40 40 H 1.09000 * 110.37270 * 277.72601 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6367 1.9704 -0.8641 5 6 3.5453 1.4431 -0.0685 6 1 4.1218 1.8979 0.7235 7 6 4.1869 0.8630 -1.1423 8 7 3.4848 0.3097 -2.1070 9 14 6.0529 0.8644 -1.2277 10 1 6.6027 0.1456 -0.0503 11 1 6.4920 0.1845 -2.4728 12 1 6.5473 2.2647 -1.2281 13 7 1.6056 2.1154 1.2315 14 6 2.1570 3.4927 1.3085 15 6 2.0796 3.8581 2.8049 16 1 1.1995 4.4535 3.0477 17 6 3.3923 4.5576 3.2196 18 6 3.7514 3.8602 4.5555 19 7 3.3596 2.4481 4.3171 20 6 3.1762 1.7314 5.5862 21 6 2.0966 2.4986 3.5495 22 1 1.2264 2.3785 4.1949 23 6 2.1549 1.4352 2.4318 24 1 -0.3633 0.4280 0.9343 25 1 -0.3634 0.5950 -0.8378 26 1 -0.3633 -1.0232 -0.0965 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9361 -0.0981 -2.8627 30 1 1.5501 4.1788 0.7176 31 1 3.1918 3.5077 0.9664 32 1 4.1706 4.3893 2.4754 33 1 3.2293 5.6248 3.3704 34 1 4.8207 3.9348 4.7530 35 1 3.1786 4.2873 5.3786 36 1 2.3949 2.2191 6.1693 37 1 2.8874 0.7002 5.3827 38 1 4.1099 1.7430 6.1484 39 1 3.1854 1.1269 2.2548 40 1 1.5402 0.5743 2.6946 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:01 Heat of formation + Delta-G solvation = 12.842428 kcal Electronic energy + Delta-G solvation = -18446.867616 eV Core-core repulsion = 15875.347820 eV Total energy + Delta-G solvation = -2571.519796 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.66452 -36.45054 -33.37225 -31.88390 -31.03808 -28.70828 -27.14061 -25.86868 -24.37303 -23.08781 -21.14176 -20.79137 -19.29226 -18.50289 -16.53579 -15.87382 -15.33184 -14.60328 -14.31224 -13.86044 -13.62629 -13.15920 -12.80324 -12.58927 -12.44215 -12.14061 -11.72165 -11.39086 -11.33406 -11.10791 -10.95488 -10.77066 -10.59583 -10.50129 -10.34227 -10.26944 -10.17117 -9.77430 -9.60829 -9.37567 -9.01655 -8.29812 -8.16794 -7.13004 -5.92966 -4.04580 3.33108 3.37627 3.41495 4.23605 4.45577 4.83368 4.93217 5.23718 5.31395 5.44668 5.50505 5.53746 5.57296 5.74982 5.76875 5.93927 5.97035 6.00090 6.15381 6.35422 6.39292 6.48190 6.49996 6.65072 6.69508 6.72570 6.86596 6.97834 7.11242 7.21264 7.22489 7.34173 7.44332 7.67321 7.81005 8.03275 8.21325 8.29061 8.50099 9.05572 9.61777 11.06900 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.021188 B = 0.009479 C = 0.007847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.213644 B = 2953.100409 C = 3567.308447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C 0.204 3.796 4 H 0.038 0.962 5 C -0.539 4.539 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.887 5.887 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.511 5.511 14 C 0.045 3.955 15 C -0.101 4.101 16 H 0.077 0.923 17 C -0.119 4.119 18 C 0.036 3.964 19 N -0.514 5.514 20 C 0.019 3.981 21 C 0.062 3.938 22 H 0.057 0.943 23 C 0.054 3.946 24 H 0.044 0.956 25 H 0.040 0.960 26 H 0.024 0.976 27 H 0.091 0.909 28 H 0.032 0.968 29 H 0.260 0.740 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.021 0.979 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.883 4.994 11.059 12.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.149 4.149 3 C 0.097 3.903 4 H 0.056 0.944 5 C -0.578 4.578 6 H 0.080 0.920 7 C -0.134 4.134 8 N -0.526 5.526 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.235 5.235 14 C -0.084 4.084 15 C -0.121 4.121 16 H 0.095 0.905 17 C -0.158 4.158 18 C -0.092 4.092 19 N -0.238 5.238 20 C -0.130 4.130 21 C -0.047 4.047 22 H 0.075 0.925 23 C -0.075 4.075 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.043 0.957 27 H 0.110 0.890 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.056 0.944 36 H 0.040 0.960 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.053 4.582 10.563 11.696 hybrid contribution 1.332 0.298 0.409 1.425 sum -0.721 4.880 10.972 12.030 Atomic orbital electron populations 1.21704 0.98939 0.98298 1.00487 1.21580 0.92090 0.99220 1.02031 1.19371 0.92889 0.91044 0.87008 0.94409 1.21711 0.92631 1.37281 1.06193 0.92034 1.24904 0.97820 0.95109 0.95607 1.69875 1.34982 1.37879 1.09834 0.86748 0.86391 0.78174 0.77246 1.20275 1.21411 1.20412 1.65757 1.52926 1.01308 1.03540 1.23055 1.00267 0.92392 0.92654 1.22722 0.96925 0.95125 0.97315 0.90468 1.22630 0.97818 0.98334 0.96989 1.23221 1.00522 0.88637 0.96816 1.64824 1.29299 1.12613 1.17032 1.22474 1.00125 0.99400 0.91026 1.23277 0.89708 0.96632 0.95073 0.92469 1.22886 1.00615 0.94805 0.89150 0.93694 0.94132 0.95661 0.89044 0.94960 0.92955 0.92218 0.91603 0.90234 0.91665 0.90597 0.94437 0.96015 0.91308 0.91833 0.90792 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.71 37.16 0.36 -2.48 16 2 C -0.11 -2.67 5.05 -26.73 -0.14 -2.80 16 3 C 0.20 5.07 1.92 -68.87 -0.13 4.93 16 4 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 5 C -0.54 -14.41 6.50 -34.44 -0.22 -14.63 16 6 H 0.06 1.67 5.67 -52.49 -0.30 1.37 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -25.10 11.30 55.43 0.63 -24.48 16 9 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.51 -11.00 4.88 -223.55 -1.09 -12.09 16 14 C 0.04 0.88 5.81 -2.26 -0.01 0.87 16 15 C -0.10 -1.65 4.02 -88.17 -0.35 -2.00 16 16 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 17 C -0.12 -1.73 6.60 -24.98 -0.16 -1.89 16 18 C 0.04 0.49 6.55 -1.95 -0.01 0.48 16 19 N -0.51 -8.14 5.00 -229.36 -1.15 -9.29 16 20 C 0.02 0.24 9.41 60.07 0.57 0.81 16 21 C 0.06 1.04 3.49 -65.38 -0.23 0.81 16 22 H 0.06 0.92 7.79 -51.93 -0.40 0.51 16 23 C 0.05 1.09 4.86 -2.22 -0.01 1.08 16 24 H 0.04 0.89 7.85 -51.93 -0.41 0.49 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 2.45 6.00 -51.93 -0.31 2.14 16 28 H 0.03 0.77 6.82 -51.93 -0.35 0.41 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.44 5.00 -51.93 -0.26 1.18 16 32 H 0.08 1.29 7.19 -51.93 -0.37 0.91 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.04 0.46 8.01 -51.93 -0.42 0.05 16 36 H 0.02 0.26 8.06 -51.93 -0.42 -0.16 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.72 5.98 -51.93 -0.31 1.41 16 40 H 0.06 1.15 7.61 -51.93 -0.40 0.75 16 LS Contribution 298.83 15.07 4.50 4.50 Total: -1.00 -27.61 298.83 -9.46 -37.07 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.89 Total: 0.98 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -0.44 Total: -13.06 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -1.61 Total: -45.86 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.61 -9.46 -37.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.912 kcal (2) G-P(sol) polarization free energy of solvation -27.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds