Wall clock time and date at job start Thu Apr 9 2020 12:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47105 * 2 1 4 4 H 1.08995 * 109.47383 * 180.32434 * 3 2 1 5 5 C 1.50702 * 109.47198 * 300.32438 * 3 2 1 6 6 H 1.08000 * 120.00168 * 120.00149 * 5 3 2 7 7 C 1.37878 * 119.99802 * 299.99909 * 5 3 2 8 8 N 1.31509 * 120.00165 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99703 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47113 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46967 * 120.00018 * 9 7 5 12 12 H 1.48495 * 109.47024 * 240.00051 * 9 7 5 13 13 N 1.46901 * 109.47397 * 60.32311 * 3 2 1 14 14 C 1.48551 * 111.00446 * 176.75447 * 13 3 2 15 15 C 1.54237 * 104.55286 * 200.45712 * 14 13 3 16 16 H 1.09002 * 112.27111 * 261.87283 * 15 14 13 17 17 C 1.54415 * 108.97721 * 136.85233 * 15 14 13 18 18 C 1.54914 * 102.98049 * 225.54530 * 17 15 14 19 19 N 1.48462 * 103.21732 * 37.79025 * 18 17 15 20 20 C 1.46896 * 111.00015 * 200.05532 * 19 18 17 21 21 C 1.47885 * 106.03135 * 320.70302 * 19 18 17 22 22 H 1.08999 * 111.75998 * 262.40214 * 21 19 18 23 23 C 1.48498 * 110.99705 * 61.35042 * 13 3 2 24 24 H 1.09000 * 109.46686 * 65.09374 * 1 2 3 25 25 H 1.08992 * 109.46885 * 185.08997 * 1 2 3 26 26 H 1.09000 * 109.47309 * 305.09520 * 1 2 3 27 27 H 1.08994 * 109.47276 * 240.00214 * 2 1 3 28 28 H 1.08998 * 109.46857 * 119.99882 * 2 1 3 29 29 H 0.96997 * 120.00041 * 180.02562 * 8 7 5 30 30 H 1.08997 * 110.42385 * 319.23000 * 14 13 3 31 31 H 1.09004 * 110.41775 * 81.68831 * 14 13 3 32 32 H 1.08995 * 110.71662 * 343.91661 * 17 15 14 33 33 H 1.08999 * 110.71299 * 107.00209 * 17 15 14 34 34 H 1.09002 * 110.66972 * 156.22628 * 18 17 15 35 35 H 1.09004 * 110.66942 * 279.19230 * 18 17 15 36 36 H 1.08996 * 109.47401 * 59.87777 * 20 19 18 37 37 H 1.09001 * 109.47101 * 179.87832 * 20 19 18 38 38 H 1.08995 * 109.47577 * 299.87271 * 20 19 18 39 39 H 1.09003 * 110.37396 * 277.72169 * 23 13 3 40 40 H 1.08996 * 110.36934 * 40.05960 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 -0.0058 5 6 1.5311 2.1552 -1.2264 6 1 0.9108 3.0331 -1.1224 7 6 1.8576 1.6865 -2.4813 8 7 2.6134 0.6178 -2.6081 9 14 1.2262 2.5696 -4.0015 10 1 0.4035 3.7356 -3.5907 11 1 2.3766 3.0382 -4.8153 12 1 0.3972 1.6374 -4.8069 13 7 1.5568 2.1328 1.2033 14 6 2.0965 3.5148 1.2773 15 6 1.9622 3.9043 2.7636 16 1 1.0710 4.5020 2.9551 17 6 3.2544 4.6195 3.2141 18 6 3.5686 3.9467 4.5737 19 7 3.1946 2.5283 4.3450 20 6 2.9693 1.8314 5.6183 21 6 1.9603 2.5575 3.5311 22 1 1.0678 2.4423 4.1462 23 6 2.0660 1.4762 2.4341 24 1 -0.3633 0.4328 -0.9321 25 1 -0.3633 -1.0236 0.0912 26 1 -0.3634 0.5908 0.8408 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.8434 0.2883 -3.4909 30 1 3.1430 3.5312 0.9729 31 1 1.5075 4.1870 0.6532 32 1 4.0605 4.4441 2.5018 33 1 3.0795 5.6879 3.3410 34 1 4.6296 4.0318 4.8090 35 1 2.9635 4.3836 5.3681 36 1 2.1642 2.3233 6.1642 37 1 2.6946 0.7951 5.4217 38 1 3.8817 1.8586 6.2139 39 1 1.4474 0.6156 2.6888 40 1 3.1040 1.1720 2.3000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175130.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:03 Heat of formation + Delta-G solvation = 13.019469 kcal Electronic energy + Delta-G solvation = -18227.420151 eV Core-core repulsion = 15655.908032 eV Total energy + Delta-G solvation = -2571.512119 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.73289 -36.45676 -33.58224 -31.97945 -30.84490 -28.72660 -27.20728 -25.88005 -24.43935 -23.25347 -21.23182 -20.89988 -19.34131 -18.49682 -16.32389 -16.00962 -15.27025 -14.70965 -14.40528 -14.06412 -13.50678 -13.41652 -12.87275 -12.59401 -12.46486 -12.23808 -11.72875 -11.60258 -11.34229 -11.17899 -10.98990 -10.90412 -10.61453 -10.46771 -10.43642 -10.33249 -10.11361 -9.85280 -9.62754 -9.28443 -8.74274 -8.36736 -8.31487 -7.20011 -5.95243 -3.98346 3.32250 3.40381 3.44579 4.10777 4.46329 4.72720 4.81973 5.13777 5.30993 5.38193 5.39583 5.43864 5.48221 5.64394 5.66516 5.83835 5.86464 5.89586 6.04420 6.23697 6.36615 6.45755 6.51112 6.53702 6.65074 6.70081 6.76597 6.85576 7.04174 7.17615 7.22118 7.36065 7.47022 7.67480 7.77370 7.89450 8.17417 8.40058 8.62412 9.07363 9.65422 11.11496 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.034344 B = 0.007075 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.082130 B = 3956.820007 C = 4408.274013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.109 4.109 3 C 0.208 3.792 4 H 0.000 1.000 5 C -0.493 4.493 6 H 0.060 0.940 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.503 5.503 14 C 0.059 3.941 15 C -0.104 4.104 16 H 0.082 0.918 17 C -0.120 4.120 18 C 0.036 3.964 19 N -0.518 5.518 20 C 0.018 3.982 21 C 0.064 3.936 22 H 0.062 0.938 23 C 0.050 3.950 24 H 0.054 0.946 25 H 0.014 0.986 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.012 0.988 29 H 0.259 0.741 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.023 0.977 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.229 4.502 12.771 13.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.148 4.148 3 C 0.101 3.899 4 H 0.017 0.983 5 C -0.532 4.532 6 H 0.079 0.921 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.227 5.227 14 C -0.069 4.069 15 C -0.124 4.124 16 H 0.100 0.900 17 C -0.158 4.158 18 C -0.092 4.092 19 N -0.242 5.242 20 C -0.131 4.131 21 C -0.045 4.045 22 H 0.080 0.920 23 C -0.079 4.079 24 H 0.073 0.927 25 H 0.033 0.967 26 H 0.064 0.936 27 H 0.108 0.892 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.141 4.071 12.314 12.970 hybrid contribution -0.031 0.726 -0.381 0.821 sum 0.110 4.797 11.933 12.862 Atomic orbital electron populations 1.21457 0.97371 0.97167 1.01767 1.21518 0.95138 0.98163 0.99966 1.19426 0.92961 0.91126 0.86342 0.98292 1.21077 1.30754 1.11735 0.89626 0.92138 1.24900 0.95304 0.95117 0.98858 1.69893 1.37316 1.23071 1.22982 0.86538 0.78565 0.79732 0.83179 1.19801 1.21247 1.21104 1.65476 1.54015 1.01090 1.02168 1.22902 0.98421 0.92902 0.92682 1.22786 0.97348 0.95118 0.97128 0.89995 1.22631 0.97931 0.98682 0.96533 1.23231 1.00615 0.88423 0.96953 1.64814 1.30936 1.13044 1.15388 1.22478 1.00053 0.99523 0.91033 1.23230 0.90362 0.96389 0.94476 0.91984 1.22937 0.98827 0.95713 0.90440 0.92701 0.96729 0.93580 0.89188 0.96915 0.93143 0.94143 0.90835 0.90445 0.91411 0.90501 0.94212 0.95803 0.91300 0.91743 0.91647 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 9.48 37.16 0.35 -2.37 16 2 C -0.11 -2.68 5.25 -26.73 -0.14 -2.82 16 3 C 0.21 5.25 1.52 -68.86 -0.10 5.15 16 4 H 0.00 -0.01 7.98 -51.93 -0.41 -0.43 16 5 C -0.49 -13.38 6.96 -34.44 -0.24 -13.62 16 6 H 0.06 1.66 7.15 -52.49 -0.38 1.28 16 7 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 8 N -0.89 -25.52 11.32 55.43 0.63 -24.89 16 9 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 13 N -0.50 -10.88 4.35 -223.55 -0.97 -11.86 16 14 C 0.06 1.16 5.32 -2.26 -0.01 1.15 16 15 C -0.10 -1.64 4.02 -88.17 -0.35 -1.99 16 16 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 17 C -0.12 -1.61 6.60 -24.98 -0.16 -1.77 16 18 C 0.04 0.45 6.55 -1.95 -0.01 0.43 16 19 N -0.52 -7.52 5.00 -229.37 -1.15 -8.67 16 20 C 0.02 0.21 9.41 60.06 0.56 0.78 16 21 C 0.06 1.02 3.49 -65.38 -0.23 0.79 16 22 H 0.06 0.95 7.79 -51.93 -0.40 0.54 16 23 C 0.05 0.95 5.09 -2.21 -0.01 0.94 16 24 H 0.05 1.33 7.40 -51.93 -0.38 0.95 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 1.00 7.46 -51.93 -0.39 0.62 16 27 H 0.09 2.45 6.08 -51.93 -0.32 2.13 16 28 H 0.01 0.28 6.96 -51.93 -0.36 -0.08 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.04 0.85 6.98 -51.93 -0.36 0.48 16 31 H 0.07 1.48 7.56 -51.93 -0.39 1.09 16 32 H 0.08 1.14 7.19 -51.93 -0.37 0.76 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.04 0.45 8.01 -51.93 -0.42 0.04 16 36 H 0.02 0.26 8.05 -51.93 -0.42 -0.16 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.24 7.67 -51.93 -0.40 0.84 16 40 H 0.05 0.99 7.76 -51.93 -0.40 0.59 16 LS Contribution 301.70 15.07 4.55 4.55 Total: -1.00 -28.26 301.70 -9.49 -37.75 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -7.08 Total: -1.48 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -0.45 Total: -11.79 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -1.49 Total: -45.42 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.26 -9.49 -37.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175130.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.773 kcal (2) G-P(sol) polarization free energy of solvation -28.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds