Wall clock time and date at job start Thu Apr 9 2020 12:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47105 * 2 1 4 4 H 1.08995 * 109.47383 * 180.32434 * 3 2 1 5 5 C 1.50702 * 109.47198 * 300.32438 * 3 2 1 6 6 H 1.08000 * 120.00168 * 120.00149 * 5 3 2 7 7 C 1.37878 * 119.99802 * 299.99909 * 5 3 2 8 8 N 1.31509 * 120.00165 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99703 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47113 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46967 * 120.00018 * 9 7 5 12 12 H 1.48495 * 109.47024 * 240.00051 * 9 7 5 13 13 N 1.46901 * 109.47397 * 60.32311 * 3 2 1 14 14 C 1.48551 * 111.00446 * 176.75447 * 13 3 2 15 15 C 1.54237 * 104.55286 * 200.45712 * 14 13 3 16 16 H 1.09002 * 112.27111 * 261.87283 * 15 14 13 17 17 C 1.54415 * 108.97721 * 136.85233 * 15 14 13 18 18 C 1.54914 * 102.98049 * 225.54530 * 17 15 14 19 19 N 1.48462 * 103.21732 * 37.79025 * 18 17 15 20 20 C 1.46896 * 111.00015 * 200.05532 * 19 18 17 21 21 C 1.47885 * 106.03135 * 320.70302 * 19 18 17 22 22 H 1.08999 * 111.75998 * 262.40214 * 21 19 18 23 23 C 1.48498 * 110.99705 * 61.35042 * 13 3 2 24 24 H 1.09000 * 109.46686 * 65.09374 * 1 2 3 25 25 H 1.08992 * 109.46885 * 185.08997 * 1 2 3 26 26 H 1.09000 * 109.47309 * 305.09520 * 1 2 3 27 27 H 1.08994 * 109.47276 * 240.00214 * 2 1 3 28 28 H 1.08998 * 109.46857 * 119.99882 * 2 1 3 29 29 H 0.96997 * 120.00041 * 180.02562 * 8 7 5 30 30 H 1.08997 * 110.42385 * 319.23000 * 14 13 3 31 31 H 1.09004 * 110.41775 * 81.68831 * 14 13 3 32 32 H 1.08995 * 110.71662 * 343.91661 * 17 15 14 33 33 H 1.08999 * 110.71299 * 107.00209 * 17 15 14 34 34 H 1.09002 * 110.66972 * 156.22628 * 18 17 15 35 35 H 1.09004 * 110.66942 * 279.19230 * 18 17 15 36 36 H 1.08996 * 109.47401 * 59.87777 * 20 19 18 37 37 H 1.09001 * 109.47101 * 179.87832 * 20 19 18 38 38 H 1.08995 * 109.47577 * 299.87271 * 20 19 18 39 39 H 1.09003 * 110.37396 * 277.72169 * 23 13 3 40 40 H 1.08996 * 110.36934 * 40.05960 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 -0.0058 5 6 1.5311 2.1552 -1.2264 6 1 0.9108 3.0331 -1.1224 7 6 1.8576 1.6865 -2.4813 8 7 2.6134 0.6178 -2.6081 9 14 1.2262 2.5696 -4.0015 10 1 0.4035 3.7356 -3.5907 11 1 2.3766 3.0382 -4.8153 12 1 0.3972 1.6374 -4.8069 13 7 1.5568 2.1328 1.2033 14 6 2.0965 3.5148 1.2773 15 6 1.9622 3.9043 2.7636 16 1 1.0710 4.5020 2.9551 17 6 3.2544 4.6195 3.2141 18 6 3.5686 3.9467 4.5737 19 7 3.1946 2.5283 4.3450 20 6 2.9693 1.8314 5.6183 21 6 1.9603 2.5575 3.5311 22 1 1.0678 2.4423 4.1462 23 6 2.0660 1.4762 2.4341 24 1 -0.3633 0.4328 -0.9321 25 1 -0.3633 -1.0236 0.0912 26 1 -0.3634 0.5908 0.8408 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.8434 0.2883 -3.4909 30 1 3.1430 3.5312 0.9729 31 1 1.5075 4.1870 0.6532 32 1 4.0605 4.4441 2.5018 33 1 3.0795 5.6879 3.3410 34 1 4.6296 4.0318 4.8090 35 1 2.9635 4.3836 5.3681 36 1 2.1642 2.3233 6.1642 37 1 2.6946 0.7951 5.4217 38 1 3.8817 1.8586 6.2139 39 1 1.4474 0.6156 2.6888 40 1 3.1040 1.1720 2.3000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175130.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:03 Heat of formation + Delta-G solvation = -5.466156 kcal Electronic energy + Delta-G solvation = -18228.221748 eV Core-core repulsion = 15655.908032 eV Total energy + Delta-G solvation = -2572.313715 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.06753 -38.07618 -35.29515 -33.56365 -32.50906 -30.30336 -28.54306 -27.76103 -25.62618 -25.13659 -22.83808 -22.08261 -20.93055 -20.11894 -18.13258 -17.55305 -16.90345 -16.18527 -15.83882 -15.53926 -15.15377 -14.94325 -14.31550 -14.06381 -14.00710 -13.79894 -13.32276 -13.10683 -12.85376 -12.67316 -12.61313 -12.35874 -12.28446 -12.22035 -11.85795 -11.76383 -11.61975 -11.55208 -11.47918 -11.15226 -10.77701 -10.47525 -9.38428 -9.02306 -8.07820 -6.18080 1.40382 1.42493 1.53839 2.43357 3.00647 3.20423 3.46311 3.61012 3.79918 3.96733 4.27260 4.33373 4.47981 4.49728 4.53912 4.57368 4.61011 4.73263 4.77452 4.85613 4.90509 4.93251 4.99605 5.02132 5.09070 5.14274 5.19734 5.25562 5.34087 5.41626 5.48582 5.69706 5.75168 5.84185 5.99540 6.18105 6.28066 6.38611 6.66550 6.94527 7.49755 8.98426 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.034344 B = 0.007075 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.082130 B = 3956.820007 C = 4408.274013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.105 4.105 3 C 0.217 3.783 4 H -0.047 1.047 5 C -0.502 4.502 6 H 0.054 0.946 7 C 0.012 3.988 8 N -0.921 5.921 9 Si 0.954 3.046 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.280 1.280 13 N -0.507 5.507 14 C 0.059 3.941 15 C -0.097 4.097 16 H 0.101 0.899 17 C -0.116 4.116 18 C 0.041 3.959 19 N -0.541 5.541 20 C 0.019 3.981 21 C 0.073 3.927 22 H 0.078 0.922 23 C 0.052 3.948 24 H 0.033 0.967 25 H 0.038 0.962 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.023 0.977 29 H 0.260 0.740 30 H 0.016 0.984 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.038 0.962 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.753 5.668 14.467 15.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.144 4.144 3 C 0.109 3.891 4 H -0.030 1.030 5 C -0.541 4.541 6 H 0.072 0.928 7 C -0.186 4.186 8 N -0.562 5.562 9 Si 0.780 3.220 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.206 1.206 13 N -0.231 5.231 14 C -0.070 4.070 15 C -0.116 4.116 16 H 0.119 0.881 17 C -0.154 4.154 18 C -0.086 4.086 19 N -0.266 5.266 20 C -0.130 4.130 21 C -0.035 4.035 22 H 0.096 0.904 23 C -0.077 4.077 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.035 0.965 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -0.842 5.245 14.033 15.005 hybrid contribution 0.328 0.341 -0.879 0.998 sum -0.515 5.586 13.154 14.300 Atomic orbital electron populations 1.21305 0.95533 0.98686 1.00881 1.21395 0.96633 0.97387 0.98981 1.19174 0.90091 0.92061 0.87748 1.02980 1.21256 1.30548 1.11610 0.90664 0.92764 1.25648 0.95472 0.95781 1.01680 1.70030 1.38265 1.24285 1.23589 0.85563 0.78062 0.78785 0.79605 1.19118 1.20916 1.20619 1.65394 1.53889 1.02038 1.01802 1.22901 0.96548 0.91707 0.95829 1.22778 0.99464 0.95706 0.93701 0.88058 1.22608 0.95910 1.00213 0.96704 1.23263 1.01715 0.86997 0.96655 1.64727 1.30167 1.14751 1.16958 1.22517 1.01387 0.99047 0.90016 1.23076 0.91823 0.94746 0.93904 0.90424 1.22928 0.97116 0.97010 0.90628 0.94801 0.94268 0.92772 0.92142 0.95844 0.93114 0.96536 0.91858 0.92501 0.88733 0.89412 0.92018 0.94332 0.91827 0.90248 0.91458 0.95917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.78 9.48 71.98 0.68 -4.10 16 2 C -0.11 -5.29 5.25 30.59 0.16 -5.12 16 3 C 0.22 11.38 1.52 44.17 0.07 11.45 16 4 H -0.05 -2.86 7.98 -2.39 -0.02 -2.88 16 5 C -0.50 -27.97 6.96 25.60 0.18 -27.80 16 6 H 0.05 3.03 7.15 -2.91 -0.02 3.01 16 7 C 0.01 0.70 5.30 84.66 0.45 1.15 16 8 N -0.92 -54.21 11.32 21.45 0.24 -53.96 16 9 Si 0.95 44.41 29.54 68.60 2.03 46.44 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 N -0.51 -22.31 4.35 -861.17 -3.75 -26.05 16 14 C 0.06 2.33 5.32 86.40 0.46 2.79 16 15 C -0.10 -2.88 4.02 -9.21 -0.04 -2.91 16 16 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 17 C -0.12 -2.88 6.60 31.73 0.21 -2.67 16 18 C 0.04 0.90 6.55 86.66 0.57 1.46 16 19 N -0.54 -14.56 5.00 -879.58 -4.40 -18.96 16 20 C 0.02 0.39 9.41 127.69 1.20 1.59 16 21 C 0.07 2.21 3.49 45.89 0.16 2.37 16 22 H 0.08 2.12 7.79 -2.39 -0.02 2.10 16 23 C 0.05 1.99 5.09 86.47 0.44 2.43 16 24 H 0.03 1.63 7.40 -2.39 -0.02 1.61 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.05 2.31 7.46 -2.39 -0.02 2.29 16 27 H 0.06 3.40 6.08 -2.39 -0.01 3.38 16 28 H 0.02 1.08 6.96 -2.39 -0.02 1.07 16 29 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.02 0.72 6.98 -2.39 -0.02 0.71 16 31 H 0.06 2.60 7.56 -2.38 -0.02 2.58 16 32 H 0.06 1.65 7.19 -2.39 -0.02 1.63 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.06 1.12 8.01 -2.39 -0.02 1.10 16 36 H 0.04 0.70 8.05 -2.39 -0.02 0.68 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 2.51 7.67 -2.39 -0.02 2.49 16 40 H 0.02 0.98 7.76 -2.39 -0.02 0.96 16 Total: -1.00 -62.34 301.70 -0.36 -62.69 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.98 Total: 9.21 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: 4.54 Total: -19.37 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -7.90 Total: -98.97 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -62.34 -0.36 -62.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175130.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.228 kcal (2) G-P(sol) polarization free energy of solvation -62.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds