Wall clock time and date at job start Thu Apr 9 2020 12:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47446 * 111.00255 * 2 1 4 4 C 1.54316 * 107.23320 * 123.25926 * 3 2 1 5 5 C 1.55139 * 103.01810 * 22.28197 * 4 3 2 6 6 H 1.09005 * 110.98834 * 82.44234 * 5 4 3 7 7 N 1.46898 * 110.99041 * 206.21396 * 5 4 3 8 8 C 1.46907 * 111.00333 * 205.00035 * 7 5 4 9 9 H 1.09000 * 109.41321 * 324.86445 * 8 7 5 10 10 C 1.52956 * 109.40970 * 84.64815 * 8 7 5 11 11 C 1.53225 * 109.40511 * 183.70485 * 10 8 7 12 12 C 1.51276 * 108.53890 * 305.37535 * 11 10 8 13 13 C 1.37869 * 120.85315 * 231.32486 * 12 11 10 14 14 N 1.31515 * 120.00479 * 180.02562 * 13 12 11 15 15 Si 1.86804 * 119.99759 * 0.02562 * 13 12 11 16 16 H 1.48501 * 109.47302 * 90.00322 * 15 13 12 17 17 H 1.48506 * 109.46681 * 209.99926 * 15 13 12 18 18 H 1.48492 * 109.47105 * 329.99570 * 15 13 12 19 19 C 1.51269 * 118.29694 * 51.34477 * 12 11 10 20 20 C 1.52957 * 109.41284 * 205.00526 * 8 7 5 21 21 C 1.47843 * 110.99888 * 120.84451 * 2 1 3 22 22 H 1.09006 * 109.46978 * 59.87430 * 1 2 3 23 23 H 1.08996 * 109.47091 * 179.87344 * 1 2 3 24 24 H 1.08998 * 109.46910 * 299.87827 * 1 2 3 25 25 H 1.08997 * 109.88511 * 242.66682 * 3 2 1 26 26 H 1.08995 * 109.88851 * 3.68984 * 3 2 1 27 27 H 1.08999 * 110.70589 * 140.66668 * 4 3 2 28 28 H 1.09003 * 110.70251 * 263.90046 * 4 3 2 29 29 H 1.00897 * 111.00317 * 328.96323 * 7 5 4 30 30 H 1.08995 * 109.48435 * 303.68891 * 10 8 7 31 31 H 1.09008 * 109.48251 * 63.72712 * 10 8 7 32 32 H 1.08997 * 109.62856 * 185.66299 * 11 10 8 33 33 H 1.09003 * 109.78428 * 65.17927 * 11 10 8 34 34 H 0.96990 * 120.00655 * 180.02562 * 14 13 12 35 35 H 1.08996 * 109.62540 * 188.94102 * 19 12 11 36 36 H 1.08996 * 109.62642 * 68.36691 * 19 12 11 37 37 H 1.09007 * 109.47966 * 296.27404 * 20 8 7 38 38 H 1.08994 * 109.48463 * 56.30517 * 20 8 7 39 39 H 1.08998 * 110.37465 * 332.46027 * 21 2 1 40 40 H 1.09003 * 110.37404 * 94.80784 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9975 1.3765 0.0000 4 6 2.9159 1.5136 1.2325 5 6 3.3047 0.0443 1.5437 6 1 4.1302 -0.2834 0.9118 7 7 3.6355 -0.1226 2.9652 8 6 4.5351 -1.2666 3.1656 9 1 4.2841 -2.0538 2.4547 10 6 5.9811 -0.8219 2.9398 11 6 6.9108 -2.0341 3.0578 12 6 6.6650 -2.7006 4.3934 13 6 7.7115 -2.9857 5.2445 14 7 7.4787 -3.5660 6.4015 15 14 9.4600 -2.5477 4.7543 16 1 9.7771 -1.1755 5.2251 17 1 10.4039 -3.5135 5.3722 18 1 9.5891 -2.6062 3.2762 19 6 5.2417 -3.0467 4.7709 20 6 4.3724 -1.7977 4.5908 21 6 1.9988 -0.7077 1.1850 22 1 -0.3633 0.5158 -0.8889 23 1 -0.3633 -1.0276 -0.0023 24 1 -0.3633 0.5119 0.8911 25 1 2.5697 1.5539 -0.9105 26 1 1.1755 2.0892 0.0660 27 1 3.8001 2.1033 0.9905 28 1 2.3745 1.9546 2.0694 29 1 4.0349 0.7224 3.3452 30 1 6.0763 -0.3861 1.9453 31 1 6.2545 -0.0796 3.6898 32 1 7.9487 -1.7067 2.9976 33 1 6.7020 -2.7390 2.2530 34 1 8.2148 -3.7662 7.0005 35 1 5.2071 -3.3699 5.8113 36 1 4.8751 -3.8441 4.1245 37 1 4.6839 -1.0324 5.3017 38 1 3.3275 -2.0534 4.7664 39 1 1.2889 -0.6502 2.0102 40 1 2.2147 -1.7478 0.9408 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255412031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:07 Heat of formation + Delta-G solvation = -10.313878 kcal Electronic energy + Delta-G solvation = -17641.854248 eV Core-core repulsion = 15069.330319 eV Total energy + Delta-G solvation = -2572.523928 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.19432 -37.19859 -34.09195 -31.95532 -30.35956 -29.57144 -28.29804 -26.47384 -24.80602 -21.88063 -21.25860 -20.97893 -20.26428 -19.19518 -16.28702 -16.24572 -15.56087 -14.55964 -14.36783 -14.20200 -13.85243 -13.39432 -13.11508 -12.94836 -12.75254 -12.26051 -12.13377 -11.92272 -11.64475 -11.46504 -11.26068 -11.03262 -10.87604 -10.79195 -10.71311 -10.30855 -10.09548 -9.79218 -9.58331 -8.86063 -8.73578 -8.44084 -8.37583 -7.83122 -6.07041 -3.97335 3.27134 3.36086 3.37631 3.92083 4.40054 4.53639 4.67224 4.79616 5.08661 5.21043 5.26998 5.35702 5.40315 5.63626 5.64179 5.74948 5.75798 5.82449 5.92964 5.96908 6.13532 6.18094 6.24053 6.51246 6.74216 6.81817 6.84531 6.90319 6.97173 7.03687 7.06410 7.23093 7.42103 7.60603 7.68183 7.74566 7.89986 7.93224 8.44003 9.01179 9.57798 11.02660 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.047336 B = 0.005373 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.372054 B = 5209.537061 C = 5507.964835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.538 5.538 3 C 0.045 3.955 4 C -0.146 4.146 5 C 0.078 3.922 6 H 0.061 0.939 7 N -0.682 5.682 8 C 0.100 3.900 9 H 0.065 0.935 10 C -0.133 4.133 11 C -0.012 4.012 12 C -0.486 4.486 13 C 0.075 3.925 14 N -0.891 5.891 15 Si 0.887 3.113 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.268 1.268 19 C 0.009 3.991 20 C -0.092 4.092 21 C 0.052 3.948 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.026 0.974 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.337 0.663 30 H 0.027 0.973 31 H 0.051 0.949 32 H 0.027 0.973 33 H 0.016 0.984 34 H 0.263 0.737 35 H 0.057 0.943 36 H 0.002 0.998 37 H 0.046 0.954 38 H 0.035 0.965 39 H 0.057 0.943 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.568 8.925 -9.775 16.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.262 5.262 3 C -0.084 4.084 4 C -0.185 4.185 5 C -0.033 4.033 6 H 0.079 0.921 7 N -0.312 5.312 8 C -0.009 4.009 9 H 0.083 0.917 10 C -0.173 4.173 11 C -0.050 4.050 12 C -0.505 4.505 13 C -0.127 4.127 14 N -0.529 5.529 15 Si 0.715 3.285 16 H -0.205 1.205 17 H -0.216 1.216 18 H -0.193 1.193 19 C -0.029 4.029 20 C -0.131 4.131 21 C -0.076 4.076 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.045 0.955 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.156 0.844 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.021 0.979 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.917 8.237 -9.915 16.263 hybrid contribution 1.573 1.068 0.194 1.911 sum -8.344 9.304 -9.721 15.833 Atomic orbital electron populations 1.22513 0.87888 1.02012 1.00246 1.63556 1.07795 1.14016 1.40877 1.22745 0.97743 0.89621 0.98246 1.22967 0.99967 0.97296 0.98269 1.22587 0.96627 0.93750 0.90369 0.92147 1.60733 1.48789 1.08301 1.13372 1.21544 0.89345 0.91025 0.98964 0.91668 1.22227 0.97244 0.99999 0.97801 1.19688 0.94716 0.93178 0.97435 1.20053 0.92422 1.37783 1.00231 1.24840 0.98489 0.94812 0.94608 1.69834 1.31980 1.41833 1.09218 0.86685 0.84784 0.78230 0.78790 1.20527 1.21645 1.19326 1.19394 0.92879 0.91708 0.98945 1.21570 0.97942 0.99886 0.93699 1.23045 0.95865 0.98265 0.90392 0.91711 0.91425 0.95528 0.90716 0.92859 0.90966 0.90757 0.84443 0.95439 0.92981 0.95456 0.96609 0.92660 0.92466 0.97941 0.93499 0.94608 0.92500 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.12 60.06 0.55 0.77 16 2 N -0.54 -6.68 5.44 -239.52 -1.30 -7.99 16 3 C 0.04 0.49 6.90 -2.84 -0.02 0.47 16 4 C -0.15 -1.69 6.34 -24.91 -0.16 -1.85 16 5 C 0.08 1.10 3.09 -65.58 -0.20 0.90 16 6 H 0.06 0.94 7.21 -51.93 -0.37 0.57 16 7 N -0.68 -10.89 6.15 -97.55 -0.60 -11.49 16 8 C 0.10 1.91 2.23 -67.75 -0.15 1.76 16 9 H 0.07 1.31 7.86 -51.93 -0.41 0.90 16 10 C -0.13 -2.68 5.18 -26.64 -0.14 -2.82 16 11 C -0.01 -0.28 5.59 -27.48 -0.15 -0.44 16 12 C -0.49 -12.89 5.51 -98.92 -0.55 -13.44 16 13 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 14 N -0.89 -25.89 12.73 55.43 0.71 -25.18 16 15 Si 0.89 21.31 27.27 -169.99 -4.64 16.68 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.27 -6.27 6.46 56.52 0.37 -5.91 16 19 C 0.01 0.22 5.97 -27.48 -0.16 0.05 16 20 C -0.09 -2.00 5.54 -26.63 -0.15 -2.14 16 21 C 0.05 0.73 6.42 -2.30 -0.01 0.71 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.03 0.27 8.10 -51.93 -0.42 -0.16 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.51 7.58 -51.93 -0.39 0.12 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.34 5.14 8.19 -39.29 -0.32 4.82 16 30 H 0.03 0.50 7.46 -51.93 -0.39 0.11 16 31 H 0.05 1.07 8.14 -51.92 -0.42 0.64 16 32 H 0.03 0.64 4.78 -51.93 -0.25 0.39 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.06 1.58 7.07 -51.93 -0.37 1.22 16 36 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 37 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.82 7.78 -51.93 -0.40 0.41 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 303.56 15.07 4.57 4.57 Total: -1.00 -27.84 303.56 -9.65 -37.49 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.15 Total: -0.03 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -1.24 Total: -14.05 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: -1.20 Total: -44.66 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.64 Total: 16.68 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.84 -9.65 -37.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255412031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.174 kcal (2) G-P(sol) polarization free energy of solvation -27.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds