Wall clock time and date at job start Thu Apr 9 2020 12:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48716 * 111.01563 * 2 1 4 4 C 1.54380 * 104.51766 * 158.96919 * 3 2 1 5 5 C 1.54255 * 105.15185 * 336.26924 * 4 3 2 6 6 H 1.08999 * 110.32974 * 118.94389 * 5 4 3 7 7 N 1.46900 * 110.32605 * 241.05615 * 5 4 3 8 8 C 1.46908 * 110.99887 * 210.56012 * 7 5 4 9 9 C 1.50700 * 110.01297 * 59.04225 * 8 7 5 10 10 H 1.08005 * 119.99841 * 239.12837 * 9 8 7 11 11 C 1.37877 * 120.00043 * 59.13534 * 9 8 7 12 12 N 1.31506 * 120.00410 * 352.91525 * 11 9 8 13 13 Si 1.86807 * 119.99592 * 172.91256 * 11 9 8 14 14 H 1.48493 * 109.47324 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46794 * 120.00238 * 13 11 9 16 16 H 1.48497 * 109.47103 * 239.99525 * 13 11 9 17 17 C 1.54256 * 110.03352 * 297.60001 * 8 7 5 18 18 C 1.54883 * 104.19594 * 217.10634 * 17 8 7 19 19 C 1.54886 * 102.74954 * 37.94245 * 18 17 8 20 20 C 1.53871 * 110.03123 * 180.43183 * 8 7 5 21 21 C 1.48564 * 111.00446 * 115.51161 * 2 1 3 22 22 H 1.08996 * 109.47003 * 304.48635 * 1 2 3 23 23 H 1.08998 * 109.47570 * 64.49023 * 1 2 3 24 24 H 1.09003 * 109.47049 * 184.49600 * 1 2 3 25 25 H 1.09001 * 110.39080 * 40.24729 * 3 2 1 26 26 H 1.09000 * 110.50744 * 277.75044 * 3 2 1 27 27 H 1.09000 * 110.32678 * 217.32434 * 4 3 2 28 28 H 1.08999 * 110.32403 * 95.21492 * 4 3 2 29 29 H 1.00895 * 111.00411 * 86.60484 * 7 5 4 30 30 H 0.96997 * 120.00704 * 185.01167 * 12 11 9 31 31 H 1.09002 * 110.48740 * 335.78090 * 17 8 7 32 32 H 1.09004 * 110.49022 * 98.42586 * 17 8 7 33 33 H 1.09002 * 110.75966 * 279.62695 * 18 17 8 34 34 H 1.09005 * 110.75923 * 156.25879 * 18 17 8 35 35 H 1.09007 * 110.48710 * 203.37867 * 19 18 17 36 36 H 1.09004 * 110.48837 * 80.73801 * 19 18 17 37 37 H 1.09004 * 110.03241 * 238.57611 * 20 8 7 38 38 H 1.09001 * 110.03347 * 359.97438 * 20 8 7 39 39 H 1.08998 * 110.40947 * 82.17570 * 21 2 1 40 40 H 1.09005 * 110.50551 * 319.78888 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0023 1.3882 0.0000 4 6 3.4432 1.2492 0.5363 5 6 3.4433 -0.0561 1.3583 6 1 4.1496 -0.7702 0.9349 7 7 3.7808 0.2238 2.7604 8 6 4.4774 -0.9159 3.3718 9 6 5.7416 -1.2173 2.6089 10 1 5.8834 -2.1901 2.1616 11 6 6.7172 -0.2514 2.4820 12 7 6.4890 0.9731 2.9039 13 14 8.3632 -0.6821 1.7109 14 1 8.3675 -2.1149 1.3212 15 1 8.5806 0.1588 0.5063 16 1 9.4498 -0.4320 2.6917 17 6 3.5572 -2.1539 3.3821 18 6 3.8784 -2.8548 4.7254 19 6 4.0808 -1.6625 5.6932 20 6 4.8103 -0.6035 4.8412 21 6 2.0015 -0.5973 1.2517 22 1 -0.3633 0.5819 0.8470 23 1 -0.3634 0.4426 -0.9274 24 1 -0.3633 -1.0245 0.0806 25 1 1.4105 2.0224 0.6601 26 1 2.0107 1.7941 -1.0116 27 1 3.6937 2.0976 1.1732 28 1 4.1496 1.1759 -0.2906 29 1 2.9570 0.4697 3.2885 30 1 7.1460 1.6697 2.7494 31 1 2.5105 -1.8515 3.3504 32 1 3.7913 -2.8103 2.5439 33 1 4.7908 -3.4457 4.6444 34 1 3.0421 -3.4756 5.0469 35 1 4.6970 -1.9602 6.5416 36 1 3.1186 -1.2807 6.0347 37 1 5.8863 -0.6706 5.0027 38 1 4.4555 0.3940 5.1005 39 1 2.0079 -1.6850 1.1811 40 1 1.4105 -0.2764 2.1095 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255425387.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:13 Heat of formation + Delta-G solvation = 6.506299 kcal Electronic energy + Delta-G solvation = -18493.390592 eV Core-core repulsion = 15921.596041 eV Total energy + Delta-G solvation = -2571.794551 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.80834 -37.17320 -33.19967 -32.04094 -30.08457 -27.93015 -27.39483 -26.13181 -24.66484 -23.46012 -20.72107 -19.82346 -19.18340 -18.68224 -16.20064 -15.59517 -14.97900 -14.64383 -14.23463 -14.21240 -13.81945 -13.08878 -12.74126 -12.37651 -12.34095 -12.23013 -11.55911 -11.26061 -11.12946 -10.98749 -10.86995 -10.80719 -10.51132 -10.37317 -10.16198 -10.00457 -9.92304 -9.63912 -9.43841 -9.28938 -8.71574 -8.29525 -8.16906 -6.73873 -5.77115 -3.90543 3.34989 3.44433 3.47797 4.43841 4.52772 5.27970 5.29286 5.36218 5.54563 5.62472 5.71989 5.75544 5.78239 5.82725 5.87895 5.96824 6.06731 6.11818 6.27731 6.38600 6.46081 6.57538 6.67559 6.68193 6.78445 6.88446 6.90184 6.93492 7.06297 7.13351 7.25961 7.36314 7.39263 7.47889 7.81254 7.97396 8.34251 8.74996 8.95281 9.26537 9.74570 11.22932 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.019804 B = 0.010394 C = 0.007789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.538468 B = 2693.168548 C = 3593.720774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.518 5.518 3 C 0.031 3.969 4 C -0.109 4.109 5 C 0.106 3.894 6 H 0.097 0.903 7 N -0.633 5.633 8 C 0.246 3.754 9 C -0.521 4.521 10 H 0.051 0.949 11 C 0.086 3.914 12 N -0.836 5.836 13 Si 0.870 3.130 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.286 1.286 17 C -0.148 4.148 18 C -0.115 4.115 19 C -0.129 4.129 20 C -0.087 4.087 21 C 0.006 3.994 22 H 0.022 0.978 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.296 0.704 30 H 0.252 0.748 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.040 0.960 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.437 -1.135 -0.943 8.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.242 5.242 3 C -0.097 4.097 4 C -0.147 4.147 5 C -0.005 4.005 6 H 0.115 0.885 7 N -0.260 5.260 8 C 0.157 3.843 9 C -0.560 4.560 10 H 0.070 0.930 11 C -0.120 4.120 12 N -0.470 5.470 13 Si 0.698 3.302 14 H -0.200 1.200 15 H -0.213 1.213 16 H -0.213 1.213 17 C -0.188 4.188 18 C -0.153 4.153 19 C -0.167 4.167 20 C -0.126 4.126 21 C -0.124 4.124 22 H 0.041 0.959 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.053 0.947 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.572 -0.890 -1.481 7.767 hybrid contribution -0.223 -0.364 0.318 0.532 sum -7.796 -1.253 -1.163 7.981 Atomic orbital electron populations 1.22462 0.89387 1.01258 1.00257 1.65349 1.06933 1.15867 1.36023 1.23207 0.97121 0.89396 1.00013 1.22315 0.93286 1.00009 0.99131 1.22010 0.91516 0.95422 0.91592 0.88520 1.60930 1.24912 1.40589 0.99583 1.19167 0.90884 0.82909 0.91349 1.20866 1.00120 0.98672 1.36294 0.93045 1.24887 0.97098 0.95196 0.94863 1.70135 1.33368 1.00057 1.43436 0.86918 0.85708 0.78531 0.79051 1.20037 1.21297 1.21274 1.23306 0.98353 1.00822 0.96297 1.22325 0.99686 0.96944 0.96354 1.22454 0.99118 0.97406 0.97749 1.22043 0.99931 0.95535 0.95057 1.24180 0.98607 0.99928 0.89660 0.95926 0.91912 0.91916 0.94657 0.91240 0.90283 0.92193 0.88710 0.93831 0.94307 0.92878 0.91909 0.94100 0.93455 0.93655 0.91758 0.93434 0.91010 0.94816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.53 60.06 0.57 0.78 16 2 N -0.52 -8.55 5.66 -238.09 -1.35 -9.90 16 3 C 0.03 0.50 6.51 -2.09 -0.01 0.48 16 4 C -0.11 -2.08 6.78 -25.35 -0.17 -2.25 16 5 C 0.11 2.18 2.84 -66.33 -0.19 1.99 16 6 H 0.10 2.28 6.52 -51.93 -0.34 1.94 16 7 N -0.63 -13.87 4.86 -91.65 -0.45 -14.32 16 8 C 0.25 5.57 0.41 -131.64 -0.05 5.52 16 9 C -0.52 -13.40 6.23 -34.44 -0.21 -13.62 16 10 H 0.05 1.37 7.53 -52.48 -0.40 0.97 16 11 C 0.09 2.28 4.95 -17.82 -0.09 2.19 16 12 N -0.84 -22.65 12.04 55.43 0.67 -21.99 16 13 Si 0.87 20.79 29.55 -169.99 -5.02 15.76 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 C -0.15 -2.97 4.62 -25.08 -0.12 -3.08 16 18 C -0.12 -2.12 6.91 -24.74 -0.17 -2.29 16 19 C -0.13 -2.42 6.83 -25.08 -0.17 -2.59 16 20 C -0.09 -1.95 5.47 -25.62 -0.14 -2.09 16 21 C 0.01 0.11 4.45 -2.18 -0.01 0.10 16 22 H 0.02 0.29 7.98 -51.93 -0.41 -0.12 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.55 7.91 -51.93 -0.41 0.14 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.08 1.62 7.95 -51.93 -0.41 1.21 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.30 6.15 7.91 -39.29 -0.31 5.84 16 30 H 0.25 6.68 8.32 -40.82 -0.34 6.34 16 31 H 0.04 0.73 6.51 -51.93 -0.34 0.39 16 32 H 0.05 1.11 7.65 -51.93 -0.40 0.71 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.60 7.36 -51.93 -0.38 1.22 16 38 H 0.05 1.09 7.90 -51.93 -0.41 0.68 16 39 H 0.07 1.29 7.64 -51.93 -0.40 0.89 16 40 H 0.03 0.59 7.22 -51.93 -0.37 0.21 16 LS Contribution 302.48 15.07 4.56 4.56 Total: -1.00 -26.24 302.48 -9.45 -35.69 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.10 Total: 5.06 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -0.77 Total: -14.87 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -1.13 Total: -46.20 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -26.24 -9.45 -35.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255425387.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.197 kcal (2) G-P(sol) polarization free energy of solvation -26.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds