Wall clock time and date at job start Thu Apr 9 2020 12:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48561 * 110.99872 * 2 1 4 4 C 1.54384 * 104.59469 * 200.95594 * 3 2 1 5 5 C 1.54259 * 105.05682 * 23.85113 * 4 3 2 6 6 H 1.08996 * 110.32241 * 240.99557 * 5 4 3 7 7 N 1.46905 * 110.32228 * 118.89830 * 5 4 3 8 8 C 1.46894 * 111.00277 * 148.49208 * 7 5 4 9 9 C 1.50699 * 110.01787 * 62.27556 * 8 7 5 10 10 H 1.08002 * 119.99786 * 241.22288 * 9 8 7 11 11 C 1.37878 * 119.99886 * 61.22002 * 9 8 7 12 12 N 1.31509 * 119.99995 * 357.36814 * 11 9 8 13 13 Si 1.86803 * 119.99669 * 177.36071 * 11 9 8 14 14 H 1.48496 * 109.46774 * 180.02562 * 13 11 9 15 15 H 1.48492 * 109.47389 * 300.00305 * 13 11 9 16 16 H 1.48500 * 109.46889 * 60.00442 * 13 11 9 17 17 C 1.54270 * 110.03415 * 183.66816 * 8 7 5 18 18 C 1.54962 * 104.15816 * 95.75134 * 17 8 7 19 19 C 1.54894 * 102.78132 * 37.89088 * 18 17 8 20 20 C 1.53884 * 110.03175 * 300.88353 * 8 7 5 21 21 C 1.48720 * 111.01786 * 244.48835 * 2 1 3 22 22 H 1.09000 * 109.47012 * 60.12707 * 1 2 3 23 23 H 1.08996 * 109.46741 * 180.12403 * 1 2 3 24 24 H 1.08996 * 109.47522 * 300.12663 * 1 2 3 25 25 H 1.09006 * 110.41190 * 82.18071 * 3 2 1 26 26 H 1.08998 * 110.51455 * 319.78608 * 3 2 1 27 27 H 1.08998 * 110.32668 * 264.95494 * 4 3 2 28 28 H 1.09001 * 110.40635 * 142.79263 * 4 3 2 29 29 H 1.00904 * 111.00080 * 24.53379 * 7 5 4 30 30 H 0.97002 * 120.00005 * 355.26293 * 12 11 9 31 31 H 1.08999 * 110.48672 * 214.40165 * 17 8 7 32 32 H 1.08996 * 110.48011 * 337.04462 * 17 8 7 33 33 H 1.08997 * 110.72327 * 279.57505 * 18 17 8 34 34 H 1.09005 * 110.76277 * 156.22128 * 18 17 8 35 35 H 1.09001 * 110.48770 * 203.40624 * 19 18 17 36 36 H 1.09000 * 110.48704 * 80.75803 * 19 18 17 37 37 H 1.09005 * 110.02987 * 359.95361 * 20 8 7 38 38 H 1.08999 * 110.02868 * 121.37994 * 20 8 7 39 39 H 1.09001 * 110.38456 * 40.24729 * 21 2 1 40 40 H 1.08994 * 110.50814 * 277.74982 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3869 0.0000 4 6 3.4433 1.2502 -0.5343 5 6 3.4433 -0.0539 -1.3583 6 1 4.1497 -0.7685 -0.9360 7 7 3.7809 0.2282 -2.7600 8 6 4.4972 -0.9017 -3.3667 9 6 3.6182 -2.1257 -3.3740 10 1 3.9220 -3.0120 -2.8367 11 6 2.4260 -2.1142 -4.0666 12 7 2.0312 -1.0187 -4.6777 13 14 1.3718 -3.6547 -4.1369 14 1 0.1512 -3.3830 -4.9377 15 1 2.1437 -4.7543 -4.7696 16 1 0.9829 -4.0516 -2.7598 17 6 4.9209 -0.5468 -4.8069 18 6 6.3820 -0.0515 -4.6610 19 6 6.9572 -0.9957 -3.5762 20 6 5.7913 -1.1867 -2.5842 21 6 2.0024 -0.5979 -1.2529 22 1 -0.3633 0.5119 -0.8911 23 1 -0.3633 -1.0276 0.0022 24 1 -0.3634 0.5158 0.8888 25 1 2.0078 1.7917 1.0121 26 1 1.4104 2.0229 -0.6591 27 1 4.1483 1.1749 0.2935 28 1 3.6954 2.0994 -1.1695 29 1 4.3161 1.0799 -2.8386 30 1 2.5431 -0.2000 -4.5846 31 1 4.8793 -1.4293 -5.4453 32 1 4.2871 0.2447 -5.2068 33 1 6.4062 0.9846 -4.3235 34 1 6.9244 -0.1660 -5.5996 35 1 7.8089 -0.5315 -3.0790 36 1 7.2447 -1.9510 -4.0154 37 1 5.8881 -0.4860 -1.7548 38 1 5.7834 -2.2103 -2.2098 39 1 1.4106 -0.2753 -2.1095 40 1 2.0108 -1.6856 -1.1835 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255425388.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:15 Heat of formation + Delta-G solvation = 2.956567 kcal Electronic energy + Delta-G solvation = -18689.169838 eV Core-core repulsion = 16117.221359 eV Total energy + Delta-G solvation = -2571.948479 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.87080 -37.31955 -33.28592 -32.22962 -29.87259 -27.84641 -27.55024 -26.24823 -24.38296 -23.32477 -20.53767 -20.14919 -19.33058 -18.72529 -16.65724 -15.57889 -15.14550 -14.56864 -14.20378 -13.79811 -13.65664 -13.42458 -12.88216 -12.62454 -12.47053 -12.07838 -11.68320 -11.27965 -11.02788 -10.94091 -10.69813 -10.58655 -10.48249 -10.40865 -10.14754 -10.04941 -9.93705 -9.88822 -9.72165 -9.55921 -8.44222 -8.20763 -7.88665 -7.14367 -6.02087 -3.87396 3.49185 3.50132 3.67897 4.60680 4.63213 5.24594 5.28453 5.36615 5.47298 5.56578 5.62605 5.65969 5.75330 5.85807 5.91236 6.01805 6.21061 6.22776 6.23792 6.29843 6.35282 6.48656 6.53990 6.57193 6.60118 6.71269 6.77907 6.86367 7.00514 7.03948 7.17409 7.18577 7.35155 7.52046 7.64656 8.10565 8.44692 8.67232 8.83498 9.19575 9.92996 11.33024 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.017612 B = 0.012762 C = 0.008377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.416921 B = 2193.450528 C = 3341.704091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.529 5.529 3 C 0.039 3.961 4 C -0.133 4.133 5 C 0.109 3.891 6 H 0.051 0.949 7 N -0.664 5.664 8 C 0.227 3.773 9 C -0.591 4.591 10 H 0.041 0.959 11 C 0.045 3.955 12 N -0.898 5.898 13 Si 1.045 2.955 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.290 1.290 17 C -0.100 4.100 18 C -0.131 4.131 19 C -0.119 4.119 20 C -0.141 4.141 21 C 0.060 3.940 22 H 0.027 0.973 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.039 0.961 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.303 0.697 30 H 0.295 0.705 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.057 0.943 37 H 0.040 0.960 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.702 3.871 5.432 7.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.253 5.253 3 C -0.090 4.090 4 C -0.172 4.172 5 C -0.002 4.002 6 H 0.068 0.932 7 N -0.295 5.295 8 C 0.139 3.861 9 C -0.630 4.630 10 H 0.060 0.940 11 C -0.165 4.165 12 N -0.533 5.533 13 Si 0.875 3.125 14 H -0.211 1.211 15 H -0.218 1.218 16 H -0.217 1.217 17 C -0.139 4.139 18 C -0.169 4.169 19 C -0.157 4.157 20 C -0.180 4.180 21 C -0.067 4.067 22 H 0.045 0.955 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.841 2.760 4.999 5.771 hybrid contribution 1.948 1.061 0.456 2.265 sum 2.789 3.821 5.455 7.220 Atomic orbital electron populations 1.22412 0.89097 1.01764 0.99859 1.65463 1.07437 1.14412 1.38011 1.22949 0.95472 0.91004 0.99554 1.22659 0.96270 0.98837 0.99395 1.21778 0.96406 0.93634 0.88402 0.93155 1.61183 1.48988 1.04930 1.14380 1.19345 0.88221 0.89565 0.88969 1.21716 1.07114 0.96980 1.37230 0.94039 1.25303 0.95836 1.02193 0.93130 1.70550 1.42026 1.02119 1.38629 0.83923 0.76666 0.75665 0.76220 1.21080 1.21819 1.21681 1.22508 0.92153 1.00074 0.99169 1.22611 0.98663 0.98058 0.97568 1.22272 0.97227 0.98949 0.97210 1.22929 0.97149 1.00542 0.97396 1.23177 0.95096 0.99570 0.88874 0.95486 0.91649 0.92380 0.91462 0.94285 0.92090 0.91581 0.87950 0.89079 0.91797 0.92410 0.93024 0.93216 0.93755 0.92442 0.94171 0.92529 0.91630 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.53 60.06 0.57 0.87 16 2 N -0.53 -9.82 5.66 -238.09 -1.35 -11.16 16 3 C 0.04 0.64 6.49 -2.18 -0.01 0.62 16 4 C -0.13 -2.24 6.68 -25.35 -0.17 -2.41 16 5 C 0.11 2.21 2.52 -66.33 -0.17 2.05 16 6 H 0.05 1.10 6.17 -51.93 -0.32 0.78 16 7 N -0.66 -14.30 4.38 -91.64 -0.40 -14.70 16 8 C 0.23 5.16 0.37 -131.63 -0.05 5.11 16 9 C -0.59 -15.39 6.22 -34.44 -0.21 -15.61 16 10 H 0.04 1.13 7.33 -52.49 -0.38 0.74 16 11 C 0.05 1.21 4.52 -17.82 -0.08 1.13 16 12 N -0.90 -25.23 13.20 55.43 0.73 -24.50 16 13 Si 1.05 24.71 29.90 -169.99 -5.08 19.62 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 17 C -0.10 -2.22 4.90 -25.03 -0.12 -2.34 16 18 C -0.13 -2.38 6.91 -24.70 -0.17 -2.55 16 19 C -0.12 -2.14 6.83 -25.07 -0.17 -2.31 16 20 C -0.14 -2.87 5.15 -25.61 -0.13 -3.00 16 21 C 0.06 1.31 4.70 -2.09 -0.01 1.30 16 22 H 0.03 0.45 7.98 -51.93 -0.41 0.04 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.04 0.65 7.98 -51.93 -0.41 0.24 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.07 1.05 7.40 -51.93 -0.38 0.67 16 29 H 0.30 6.05 7.86 -39.29 -0.31 5.74 16 30 H 0.29 8.20 4.73 -40.82 -0.19 8.00 16 31 H 0.06 1.55 7.85 -51.93 -0.41 1.14 16 32 H 0.06 1.34 6.87 -51.93 -0.36 0.99 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.04 0.78 6.78 -51.93 -0.35 0.43 16 38 H 0.06 1.22 7.37 -51.93 -0.38 0.84 16 39 H 0.07 1.62 7.71 -51.93 -0.40 1.22 16 40 H 0.08 1.86 7.80 -51.93 -0.41 1.46 16 LS Contribution 298.24 15.07 4.49 4.49 Total: -1.00 -27.10 298.24 -9.24 -36.33 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.90 Total: 7.07 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -0.73 Total: -17.16 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: -1.02 Total: -50.36 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.08 Total: 19.62 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.10 -9.24 -36.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255425388.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.288 kcal (2) G-P(sol) polarization free energy of solvation -27.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds