Wall clock time and date at job start Thu Apr 9 2020 12:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48561 * 110.99872 * 2 1 4 4 C 1.54384 * 104.59469 * 200.95594 * 3 2 1 5 5 C 1.54259 * 105.05682 * 23.85113 * 4 3 2 6 6 H 1.08996 * 110.32241 * 240.99557 * 5 4 3 7 7 N 1.46905 * 110.32228 * 118.89830 * 5 4 3 8 8 C 1.46894 * 111.00277 * 148.49208 * 7 5 4 9 9 C 1.50699 * 110.01787 * 62.27556 * 8 7 5 10 10 H 1.08002 * 119.99786 * 241.22288 * 9 8 7 11 11 C 1.37878 * 119.99886 * 61.22002 * 9 8 7 12 12 N 1.31509 * 119.99995 * 357.36814 * 11 9 8 13 13 Si 1.86803 * 119.99669 * 177.36071 * 11 9 8 14 14 H 1.48496 * 109.46774 * 180.02562 * 13 11 9 15 15 H 1.48492 * 109.47389 * 300.00305 * 13 11 9 16 16 H 1.48500 * 109.46889 * 60.00442 * 13 11 9 17 17 C 1.54270 * 110.03415 * 183.66816 * 8 7 5 18 18 C 1.54962 * 104.15816 * 95.75134 * 17 8 7 19 19 C 1.54894 * 102.78132 * 37.89088 * 18 17 8 20 20 C 1.53884 * 110.03175 * 300.88353 * 8 7 5 21 21 C 1.48720 * 111.01786 * 244.48835 * 2 1 3 22 22 H 1.09000 * 109.47012 * 60.12707 * 1 2 3 23 23 H 1.08996 * 109.46741 * 180.12403 * 1 2 3 24 24 H 1.08996 * 109.47522 * 300.12663 * 1 2 3 25 25 H 1.09006 * 110.41190 * 82.18071 * 3 2 1 26 26 H 1.08998 * 110.51455 * 319.78608 * 3 2 1 27 27 H 1.08998 * 110.32668 * 264.95494 * 4 3 2 28 28 H 1.09001 * 110.40635 * 142.79263 * 4 3 2 29 29 H 1.00904 * 111.00080 * 24.53379 * 7 5 4 30 30 H 0.97002 * 120.00005 * 355.26293 * 12 11 9 31 31 H 1.08999 * 110.48672 * 214.40165 * 17 8 7 32 32 H 1.08996 * 110.48011 * 337.04462 * 17 8 7 33 33 H 1.08997 * 110.72327 * 279.57505 * 18 17 8 34 34 H 1.09005 * 110.76277 * 156.22128 * 18 17 8 35 35 H 1.09001 * 110.48770 * 203.40624 * 19 18 17 36 36 H 1.09000 * 110.48704 * 80.75803 * 19 18 17 37 37 H 1.09005 * 110.02987 * 359.95361 * 20 8 7 38 38 H 1.08999 * 110.02868 * 121.37994 * 20 8 7 39 39 H 1.09001 * 110.38456 * 40.24729 * 21 2 1 40 40 H 1.08994 * 110.50814 * 277.74982 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3869 0.0000 4 6 3.4433 1.2502 -0.5343 5 6 3.4433 -0.0539 -1.3583 6 1 4.1497 -0.7685 -0.9360 7 7 3.7809 0.2282 -2.7600 8 6 4.4972 -0.9017 -3.3667 9 6 3.6182 -2.1257 -3.3740 10 1 3.9220 -3.0120 -2.8367 11 6 2.4260 -2.1142 -4.0666 12 7 2.0312 -1.0187 -4.6777 13 14 1.3718 -3.6547 -4.1369 14 1 0.1512 -3.3830 -4.9377 15 1 2.1437 -4.7543 -4.7696 16 1 0.9829 -4.0516 -2.7598 17 6 4.9209 -0.5468 -4.8069 18 6 6.3820 -0.0515 -4.6610 19 6 6.9572 -0.9957 -3.5762 20 6 5.7913 -1.1867 -2.5842 21 6 2.0024 -0.5979 -1.2529 22 1 -0.3633 0.5119 -0.8911 23 1 -0.3633 -1.0276 0.0022 24 1 -0.3634 0.5158 0.8888 25 1 2.0078 1.7917 1.0121 26 1 1.4104 2.0229 -0.6591 27 1 4.1483 1.1749 0.2935 28 1 3.6954 2.0994 -1.1695 29 1 4.3161 1.0799 -2.8386 30 1 2.5431 -0.2000 -4.5846 31 1 4.8793 -1.4293 -5.4453 32 1 4.2871 0.2447 -5.2068 33 1 6.4062 0.9846 -4.3235 34 1 6.9244 -0.1660 -5.5996 35 1 7.8089 -0.5315 -3.0790 36 1 7.2447 -1.9510 -4.0154 37 1 5.8881 -0.4860 -1.7548 38 1 5.7834 -2.2103 -2.2098 39 1 1.4106 -0.2753 -2.1095 40 1 2.0108 -1.6856 -1.1835 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255425388.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:15 Heat of formation + Delta-G solvation = -14.674227 kcal Electronic energy + Delta-G solvation = -18689.934366 eV Core-core repulsion = 16117.221359 eV Total energy + Delta-G solvation = -2572.713007 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.50025 -38.89110 -34.90711 -34.12077 -31.39350 -29.50694 -29.14741 -27.99850 -25.94681 -25.12477 -22.02112 -21.67742 -20.91708 -20.56745 -18.56219 -17.16741 -16.71555 -16.09728 -15.83049 -15.60765 -15.30827 -14.90005 -14.50231 -14.21614 -14.03616 -13.83317 -13.33304 -12.83195 -12.72536 -12.47185 -12.26374 -12.23574 -12.14334 -11.96940 -11.94314 -11.69792 -11.65466 -11.48008 -11.33502 -11.24851 -10.42684 -10.20218 -9.43238 -8.90070 -8.10023 -5.98906 1.52684 1.56701 1.74776 2.65680 3.11977 3.44476 3.80257 3.84413 3.89293 4.06861 4.08345 4.16547 4.26007 4.45433 4.56613 4.60073 4.67733 4.80415 4.85208 4.87844 4.90042 4.92827 5.00280 5.01284 5.09293 5.15624 5.17518 5.20708 5.29762 5.32127 5.45272 5.54466 5.71441 5.85823 6.13909 6.18138 6.48784 6.81315 6.99410 7.23742 7.86004 9.21504 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.017612 B = 0.012762 C = 0.008377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.416921 B = 2193.450528 C = 3341.704091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.534 5.534 3 C 0.040 3.960 4 C -0.124 4.124 5 C 0.108 3.892 6 H 0.034 0.966 7 N -0.672 5.672 8 C 0.221 3.779 9 C -0.595 4.595 10 H 0.020 0.980 11 C 0.013 3.987 12 N -0.923 5.923 13 Si 1.074 2.926 14 H -0.289 1.289 15 H -0.281 1.281 16 H -0.284 1.284 17 C -0.097 4.097 18 C -0.119 4.119 19 C -0.112 4.112 20 C -0.136 4.136 21 C 0.073 3.927 22 H 0.017 0.983 23 H 0.060 0.940 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.037 0.963 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.316 0.684 30 H 0.290 0.710 31 H 0.032 0.968 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.035 0.965 39 H 0.031 0.969 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.833 5.278 6.673 9.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.258 5.258 3 C -0.088 4.088 4 C -0.162 4.162 5 C -0.003 4.003 6 H 0.052 0.948 7 N -0.303 5.303 8 C 0.132 3.868 9 C -0.634 4.634 10 H 0.038 0.962 11 C -0.193 4.193 12 N -0.560 5.560 13 Si 0.901 3.099 14 H -0.215 1.215 15 H -0.207 1.207 16 H -0.210 1.210 17 C -0.136 4.136 18 C -0.156 4.156 19 C -0.150 4.150 20 C -0.176 4.176 21 C -0.056 4.056 22 H 0.036 0.964 23 H 0.079 0.921 24 H 0.109 0.891 25 H 0.116 0.884 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.134 0.866 30 H 0.103 0.897 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.984 4.166 6.250 7.769 hybrid contribution 1.575 0.603 0.114 1.691 sum 3.559 4.770 6.364 8.713 Atomic orbital electron populations 1.22479 0.87789 1.01953 1.00922 1.65435 1.08797 1.15947 1.35622 1.23055 0.94869 0.89569 1.01313 1.22617 0.97150 0.96922 0.99529 1.21743 0.94888 0.95395 0.88265 0.94844 1.60939 1.49209 1.04968 1.15187 1.19314 0.88757 0.88817 0.89932 1.21925 1.07521 0.97743 1.36196 0.96186 1.26072 0.96861 1.03376 0.92978 1.70615 1.42636 1.02461 1.40261 0.83519 0.75703 0.74178 0.76464 1.21497 1.20682 1.20994 1.22332 0.95035 0.98275 0.97962 1.22536 0.95496 0.98891 0.98708 1.22244 0.97086 0.99187 0.96491 1.22808 0.97153 0.99527 0.98103 1.22826 0.95922 0.97682 0.89148 0.96450 0.92073 0.89122 0.88372 0.94472 0.90106 0.90275 0.86613 0.89658 0.94893 0.94114 0.91147 0.91351 0.90593 0.92691 0.93003 0.94634 0.95081 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.53 127.69 1.22 1.77 16 2 N -0.53 -19.22 5.66 -907.19 -5.13 -24.35 16 3 C 0.04 1.21 6.49 86.45 0.56 1.77 16 4 C -0.12 -3.84 6.68 31.49 0.21 -3.63 16 5 C 0.11 4.36 2.52 45.81 0.12 4.47 16 6 H 0.03 1.46 6.17 -2.39 -0.01 1.45 16 7 N -0.67 -28.79 4.38 -443.86 -1.94 -30.73 16 8 C 0.22 10.08 0.37 3.51 0.00 10.08 16 9 C -0.59 -31.94 6.22 25.60 0.16 -31.78 16 10 H 0.02 1.13 7.33 -2.91 -0.02 1.11 16 11 C 0.01 0.70 4.52 84.66 0.38 1.08 16 12 N -0.92 -53.39 13.20 21.45 0.28 -53.11 16 13 Si 1.07 51.24 29.90 68.60 2.05 53.29 16 14 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 15 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 16 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 17 C -0.10 -4.30 4.90 31.70 0.16 -4.15 16 18 C -0.12 -4.02 6.91 31.91 0.22 -3.80 16 19 C -0.11 -3.76 6.83 31.67 0.22 -3.54 16 20 C -0.14 -5.45 5.15 31.32 0.16 -5.28 16 21 C 0.07 3.21 4.70 86.42 0.41 3.62 16 22 H 0.02 0.57 7.98 -2.39 -0.02 0.55 16 23 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.09 2.26 8.14 -2.39 -0.02 2.25 16 25 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 26 H 0.04 1.15 7.98 -2.39 -0.02 1.13 16 27 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.08 2.26 7.40 -2.39 -0.02 2.25 16 29 H 0.32 12.12 7.86 -89.69 -0.70 11.42 16 30 H 0.29 16.57 4.73 -92.71 -0.44 16.13 16 31 H 0.03 1.62 7.85 -2.39 -0.02 1.60 16 32 H 0.04 1.91 6.87 -2.39 -0.02 1.89 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.13 16 34 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.05 1.92 6.78 -2.38 -0.02 1.91 16 38 H 0.03 1.54 7.37 -2.39 -0.02 1.52 16 39 H 0.03 1.58 7.71 -2.39 -0.02 1.56 16 40 H 0.04 2.17 7.80 -2.39 -0.02 2.15 16 Total: -1.00 -60.16 298.24 -0.31 -60.47 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.62 Total: 23.83 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: 3.81 Total: -29.40 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -6.79 Total: -108.19 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 2.05 Total: 53.29 kcal Total: -60.16 -0.31 -60.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255425388.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.794 kcal (2) G-P(sol) polarization free energy of solvation -60.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds