Wall clock time and date at job start Thu Apr 9 2020 12:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38320 * 120.44985 * 2 1 4 4 C 1.38868 * 118.51236 * 180.24871 * 3 2 1 5 5 C 1.38078 * 119.33493 * 359.74150 * 4 3 2 6 6 N 1.31927 * 120.86266 * 0.02562 * 5 4 3 7 7 C 1.32496 * 121.61475 * 359.97438 * 6 5 4 8 8 S 1.76199 * 119.70896 * 179.97438 * 7 6 5 9 9 C 1.81396 * 103.00267 * 359.97438 * 8 7 6 10 10 C 1.52996 * 109.47320 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47066 * 60.00127 * 10 9 8 12 12 O 1.42903 * 109.47446 * 300.00003 * 10 9 8 13 13 C 1.50702 * 109.47159 * 179.97438 * 10 9 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 10 9 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 10 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 10 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 H 1.09002 * 109.47125 * 270.25293 * 1 2 3 22 22 H 1.08991 * 109.47284 * 30.25643 * 1 2 3 23 23 H 1.09004 * 109.47062 * 150.25554 * 1 2 3 24 24 H 1.07997 * 120.74488 * 359.97438 * 3 2 1 25 25 H 1.07998 * 120.33411 * 179.72238 * 4 3 2 26 26 H 1.08000 * 119.57006 * 180.02562 * 5 4 3 27 27 H 1.09004 * 109.46947 * 59.99814 * 9 8 7 28 28 H 1.09000 * 109.47486 * 300.00242 * 9 8 7 29 29 H 0.96697 * 113.99557 * 300.00558 * 12 10 9 30 30 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2079 1.1924 0.0000 4 6 3.5958 1.1455 -0.0053 5 6 4.2312 -0.0804 -0.0049 6 7 3.5372 -1.2024 -0.0002 7 6 2.2123 -1.1995 0.0050 8 16 1.3357 -2.7280 0.0105 9 6 2.6659 -3.9613 0.0064 10 6 2.0592 -5.3658 0.0113 11 1 1.4393 -5.4970 -0.8757 12 8 1.2572 -5.5343 1.1820 13 6 3.1643 -6.3904 0.0072 14 1 4.1962 -6.0717 0.0020 15 6 2.8580 -7.7348 0.0163 16 7 1.6015 -8.1229 0.0229 17 14 4.2279 -9.0047 0.0189 18 1 5.0711 -8.8208 1.2274 19 1 3.6390 -10.3680 0.0286 20 1 5.0626 -8.8352 -1.1976 21 1 -0.3633 0.0045 1.0277 22 1 -0.3633 0.8876 -0.5178 23 1 -0.3633 -0.8923 -0.5099 24 1 1.6876 2.1388 -0.0004 25 1 4.1724 2.0586 -0.0100 26 1 5.3104 -0.1214 -0.0086 27 1 3.2855 -3.8304 0.8936 28 1 3.2779 -3.8326 -0.8864 29 1 1.7446 -5.4310 2.0107 30 1 1.3860 -9.0687 0.0290 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295141516.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:12 Heat of formation + Delta-G solvation = -52.051618 kcal Electronic energy + Delta-G solvation = -14255.641347 eV Core-core repulsion = 11754.675555 eV Total energy + Delta-G solvation = -2500.965793 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.94804 -37.92355 -34.61891 -34.31157 -32.83650 -31.57115 -28.27914 -27.33136 -24.77446 -23.42115 -22.66088 -19.29430 -18.78037 -17.51942 -16.72679 -16.57287 -16.27146 -16.07493 -15.58497 -15.37467 -14.99882 -14.10236 -13.87376 -13.70662 -13.40541 -13.28756 -13.25907 -12.90243 -12.76373 -12.54321 -12.05336 -11.48772 -11.04163 -10.94827 -10.73610 -10.45924 -10.35267 -10.30812 -8.49389 -8.18253 -6.45889 0.06054 0.33259 0.61398 1.39812 1.42596 1.46084 1.51500 2.38233 2.74963 3.07624 3.62574 3.89765 4.05976 4.08929 4.14205 4.23401 4.30663 4.41843 4.59893 4.76873 4.80478 4.91960 5.15736 5.20877 5.30250 5.49104 5.62613 5.75407 5.95669 6.62676 6.86720 7.25613 7.43144 8.86328 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.043899 B = 0.005617 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.678554 B = 4983.613380 C = 5526.467359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.129 4.129 3 C -0.061 4.061 4 C -0.169 4.169 5 C 0.086 3.914 6 N -0.525 5.525 7 C 0.087 3.913 8 S -0.085 6.085 9 C -0.091 4.091 10 C 0.246 3.754 11 H 0.030 0.970 12 O -0.570 6.570 13 C -0.587 4.587 14 H 0.060 0.940 15 C 0.029 3.971 16 N -0.897 5.897 17 Si 0.966 3.034 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.268 1.268 21 H 0.082 0.918 22 H 0.099 0.901 23 H 0.058 0.942 24 H 0.176 0.824 25 H 0.175 0.825 26 H 0.175 0.825 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.358 0.642 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.081 19.359 0.485 19.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.138 4.138 3 C -0.088 4.088 4 C -0.192 4.192 5 C -0.074 4.074 6 N -0.238 5.238 7 C -0.161 4.161 8 S 0.158 5.842 9 C -0.240 4.240 10 C 0.187 3.813 11 H 0.048 0.952 12 O -0.374 6.374 13 C -0.626 4.626 14 H 0.079 0.921 15 C -0.174 4.174 16 N -0.533 5.533 17 Si 0.790 3.210 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.193 1.193 21 H 0.101 0.899 22 H 0.118 0.882 23 H 0.077 0.923 24 H 0.193 0.807 25 H 0.192 0.808 26 H 0.192 0.808 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.203 0.797 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.711 17.971 0.030 17.985 hybrid contribution 2.078 -0.022 0.264 2.095 sum 2.789 17.950 0.294 18.167 Atomic orbital electron populations 1.20785 0.88632 1.03774 1.03548 1.20821 0.98651 0.92011 1.02356 1.21868 0.94457 0.98021 0.94497 1.22469 0.95469 0.99845 1.01433 1.23238 1.01304 0.87893 0.94969 1.68041 1.06876 1.33469 1.15409 1.23352 0.93407 0.97710 1.01599 1.85630 1.13509 0.94417 1.90626 1.24210 0.98502 0.96848 1.04458 1.18963 0.89770 0.87062 0.85492 0.95228 1.86523 1.40226 1.94796 1.15859 1.21847 0.93327 0.92066 1.55339 0.92143 1.25919 0.97856 1.00661 0.92986 1.70207 1.19068 1.16421 1.47612 0.85517 0.78886 0.77434 0.79173 1.19117 1.20611 1.19310 0.89912 0.88188 0.92268 0.80676 0.80807 0.80751 0.90720 0.90766 0.79737 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.37 9.59 71.23 0.68 -1.69 16 2 C -0.13 -3.38 5.92 -19.63 -0.12 -3.50 16 3 C -0.06 -1.16 9.85 22.44 0.22 -0.93 16 4 C -0.17 -3.07 10.11 22.38 0.23 -2.84 16 5 C 0.09 2.15 11.17 84.64 0.95 3.10 16 6 N -0.53 -18.10 9.43 -192.22 -1.81 -19.91 16 7 C 0.09 2.99 7.00 84.81 0.59 3.58 16 8 S -0.09 -3.39 19.78 -56.49 -1.12 -4.51 16 9 C -0.09 -4.15 4.84 71.98 0.35 -3.80 16 10 C 0.25 13.20 2.88 29.85 0.09 13.29 16 11 H 0.03 1.78 8.14 -2.38 -0.02 1.76 16 12 O -0.57 -30.62 12.32 -148.98 -1.84 -32.45 16 13 C -0.59 -33.10 8.76 25.60 0.22 -32.87 16 14 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 15 C 0.03 1.65 5.40 84.66 0.46 2.10 16 16 N -0.90 -54.10 12.83 21.45 0.28 -53.82 16 17 Si 0.97 43.72 29.54 68.60 2.03 45.74 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.10 1.48 8.10 -2.39 -0.02 1.46 16 23 H 0.06 1.52 6.80 -2.38 -0.02 1.50 16 24 H 0.18 1.82 8.06 -2.91 -0.02 1.79 16 25 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 26 H 0.18 3.33 8.06 -2.91 -0.02 3.30 16 27 H 0.07 3.38 8.14 -2.39 -0.02 3.36 16 28 H 0.07 3.43 8.14 -2.39 -0.02 3.41 16 29 H 0.36 17.14 9.04 -74.06 -0.67 16.47 16 30 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 Total: -1.00 -69.97 277.46 1.68 -68.29 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.47 Total: 20.23 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 3.67 Total: -23.57 kcal Atomic # 7 Polarization: -72.20 SS G_CDS: -1.54 Total: -73.73 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -1.84 Total: -32.45 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -1.12 Total: -4.51 kcal Total: -69.97 1.68 -68.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295141516.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.239 kcal (2) G-P(sol) polarization free energy of solvation -69.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds