Wall clock time and date at job start Thu Apr 9 2020 12:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38232 * 120.00794 * 2 1 4 4 C 1.38220 * 120.01498 * 179.97438 * 3 2 1 5 5 C 1.50692 * 119.98848 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.47320 * 90.00113 * 5 4 3 7 7 C 1.46902 * 111.00369 * 179.97438 * 6 5 4 8 8 C 1.50693 * 109.47182 * 180.02562 * 7 6 5 9 9 H 1.08001 * 120.00367 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99842 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00409 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99833 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.47125 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46934 * 119.99803 * 12 10 8 15 15 H 1.48498 * 109.46974 * 239.99286 * 12 10 8 16 16 C 1.38264 * 120.02583 * 0.02562 * 4 3 2 17 17 C 1.38189 * 120.01199 * 359.97438 * 16 4 3 18 18 C 1.38335 * 120.00426 * 179.97438 * 2 1 3 19 19 Cl 1.73595 * 120.01468 * 359.74809 * 18 2 1 20 20 H 1.08997 * 109.47389 * 270.01704 * 1 2 3 21 21 H 1.09002 * 109.47291 * 30.02179 * 1 2 3 22 22 H 1.09002 * 109.47234 * 150.01696 * 1 2 3 23 23 H 1.08002 * 119.99411 * 359.95836 * 3 2 1 24 24 H 1.08998 * 109.47388 * 210.00495 * 5 4 3 25 25 H 1.09001 * 109.47195 * 330.00365 * 5 4 3 26 26 H 1.00901 * 110.99351 * 56.04635 * 6 5 4 27 27 H 1.08999 * 109.46854 * 300.00488 * 7 6 5 28 28 H 1.08996 * 109.46680 * 59.99998 * 7 6 5 29 29 H 0.96996 * 120.00400 * 180.02562 * 11 10 8 30 30 H 1.07997 * 119.99869 * 179.97438 * 16 4 3 31 31 H 1.08001 * 120.00973 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3335 2.5025 0.0011 6 7 4.5777 2.9263 1.3863 7 6 5.3121 4.1980 1.4261 8 6 5.5441 4.5995 2.8599 9 1 5.1818 3.9729 3.6615 10 6 6.2179 5.7673 3.1484 11 7 6.6586 6.5306 2.1724 12 14 6.5048 6.2653 4.9259 13 1 5.9155 5.2432 5.8276 14 1 7.9640 6.3681 5.1817 15 1 5.8637 7.5802 5.1812 16 6 4.2725 0.0002 0.0005 17 6 3.5825 -1.1971 0.0005 18 6 2.1987 -1.1980 0.0005 19 17 1.3313 -2.7016 0.0078 20 1 -0.3634 0.0003 1.0276 21 1 -0.3634 0.8898 -0.5142 22 1 -0.3634 -0.8901 -0.5136 23 1 1.6583 2.1324 -0.0007 24 1 5.2861 2.3726 -0.5124 25 1 3.7444 3.2621 -0.5127 26 1 5.0667 2.2104 1.9025 27 1 6.2715 4.0794 0.9225 28 1 4.7301 4.9695 0.9220 29 1 7.1329 7.3520 2.3754 30 1 5.3525 0.0008 0.0005 31 1 4.1231 -2.1321 0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308739182.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:37 Heat of formation + Delta-G solvation = 1.473043 kcal Electronic energy + Delta-G solvation = -14000.631018 eV Core-core repulsion = 11499.942522 eV Total energy + Delta-G solvation = -2500.688496 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.52156 -36.62746 -35.33806 -33.03124 -32.36969 -30.76642 -27.26262 -26.74926 -24.32753 -22.22494 -21.50661 -20.35706 -16.89365 -16.43031 -15.89886 -15.04062 -14.57796 -14.34206 -14.03501 -13.55264 -13.32284 -13.13867 -12.62890 -12.43567 -12.25809 -11.66654 -11.55386 -11.37380 -11.23970 -10.94814 -10.75233 -10.67493 -10.59928 -9.97064 -9.22481 -8.77433 -8.53341 -8.44056 -7.36569 -6.06228 -4.08335 1.21170 1.35376 2.13373 3.29692 3.37047 3.42392 3.66555 4.41685 4.74237 4.78619 4.94520 5.29927 5.31203 5.33428 5.52290 5.53623 5.57576 5.65454 5.81610 5.95977 6.11699 6.18507 6.26735 6.39965 6.73621 6.89806 7.17989 7.35974 7.74537 8.07614 8.32047 8.54384 9.01027 9.56899 11.04898 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.045550 B = 0.004130 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.565543 B = 6777.455720 C = 6813.669640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.079 4.079 3 C -0.089 4.089 4 C -0.056 4.056 5 C 0.092 3.908 6 N -0.683 5.683 7 C 0.193 3.807 8 C -0.514 4.514 9 H 0.063 0.937 10 C 0.056 3.944 11 N -0.898 5.898 12 Si 0.899 3.101 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.283 1.283 16 C -0.111 4.111 17 C -0.108 4.108 18 C -0.045 4.045 19 Cl -0.081 7.081 20 H 0.074 0.926 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.133 0.867 24 H 0.031 0.969 25 H 0.075 0.925 26 H 0.330 0.670 27 H -0.012 1.012 28 H 0.029 0.971 29 H 0.261 0.739 30 H 0.129 0.871 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.040 -14.975 -6.266 18.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.079 4.079 3 C -0.108 4.108 4 C -0.057 4.057 5 C -0.038 4.038 6 N -0.314 5.314 7 C 0.066 3.934 8 C -0.553 4.553 9 H 0.081 0.919 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.727 3.273 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.130 4.130 17 C -0.127 4.127 18 C -0.072 4.072 19 Cl -0.052 7.052 20 H 0.093 0.907 21 H 0.089 0.911 22 H 0.088 0.912 23 H 0.151 0.849 24 H 0.049 0.951 25 H 0.094 0.906 26 H 0.147 0.853 27 H 0.005 0.995 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.146 0.854 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.636 -14.614 -6.232 18.581 hybrid contribution 1.131 -0.035 0.663 1.312 sum -8.505 -14.649 -5.569 17.831 Atomic orbital electron populations 1.20844 0.90549 1.03114 1.02863 1.19749 0.96572 0.91413 1.00216 1.20931 0.93629 0.97018 0.99196 1.20158 0.93925 0.95400 0.96198 1.20916 0.97361 0.92225 0.93251 1.60758 1.54437 1.07180 1.08982 1.19602 0.90886 0.85408 0.97482 1.21212 1.35248 1.06715 0.92110 0.91858 1.24989 0.95619 0.96357 0.97584 1.69967 1.38567 1.13822 1.31388 0.86421 0.77733 0.78493 0.84653 1.19625 1.21069 1.20951 1.21037 1.00143 0.91273 1.00516 1.20940 0.91842 0.98926 1.00950 1.20731 0.92298 0.86171 1.07961 1.98331 1.77161 1.32674 1.97082 0.90739 0.91127 0.91155 0.84927 0.95102 0.90643 0.85323 0.99450 0.95266 0.92921 0.85351 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 9.61 36.00 0.35 -0.85 16 2 C -0.08 -1.01 5.88 -104.59 -0.62 -1.62 16 3 C -0.09 -1.25 9.36 -39.59 -0.37 -1.62 16 4 C -0.06 -0.84 5.39 -104.62 -0.56 -1.40 16 5 C 0.09 1.59 5.81 -4.98 -0.03 1.56 16 6 N -0.68 -14.46 6.48 -116.35 -0.75 -15.21 16 7 C 0.19 4.99 5.44 -4.98 -0.03 4.96 16 8 C -0.51 -14.52 9.32 -34.44 -0.32 -14.84 16 9 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 10 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 11 N -0.90 -26.67 13.29 55.43 0.74 -25.94 16 12 Si 0.90 21.61 29.54 -169.99 -5.02 16.58 16 13 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 C -0.11 -1.48 9.70 -39.59 -0.38 -1.87 16 17 C -0.11 -1.34 9.83 -39.55 -0.39 -1.73 16 18 C -0.04 -0.57 6.31 -39.49 -0.25 -0.82 16 19 Cl -0.08 -0.91 27.30 -51.86 -1.42 -2.33 16 20 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 22 H 0.07 0.67 6.91 -51.93 -0.36 0.31 16 23 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 24 H 0.03 0.52 8.09 -51.93 -0.42 0.10 16 25 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 26 H 0.33 6.76 8.71 -39.29 -0.34 6.42 16 27 H -0.01 -0.34 8.14 -51.93 -0.42 -0.76 16 28 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 30 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 284.64 15.07 4.29 4.29 Total: -1.00 -29.57 284.64 -8.91 -38.47 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -4.04 Total: 0.86 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -2.70 Total: -16.73 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: -0.02 Total: -41.15 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.42 Total: -2.33 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.57 -8.91 -38.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308739182.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.947 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds