Wall clock time and date at job start Thu Apr 9 2020 12:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38264 * 120.34038 * 2 1 4 4 N 1.31878 * 120.85277 * 180.02562 * 3 2 1 5 5 O 1.41599 * 119.19631 * 179.97438 * 4 3 2 6 6 C 1.32592 * 121.60872 * 0.02562 * 4 3 2 7 7 N 1.39073 * 119.70537 * 179.97438 * 6 4 3 8 8 C 1.32712 * 120.00092 * 186.03226 * 7 6 4 9 9 H 1.08003 * 119.99872 * 354.72758 * 8 7 6 10 10 C 1.46797 * 119.99923 * 174.73239 * 8 7 6 11 11 N 1.29320 * 120.00568 * 359.97438 * 10 8 7 12 12 Si 1.86811 * 119.99729 * 179.97438 * 10 8 7 13 13 H 1.48491 * 109.47129 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47031 * 119.99873 * 12 10 8 15 15 H 1.48503 * 109.46722 * 239.99608 * 12 10 8 16 16 C 1.39067 * 120.59025 * 0.02562 * 6 4 3 17 17 C 1.38452 * 119.10611 * 359.97438 * 16 6 4 18 18 N 1.48018 * 120.74527 * 180.02562 * 17 16 6 19 19 O 1.31695 * 119.99664 * 7.23080 * 18 17 16 20 20 O 1.31699 * 119.99745 * 187.22942 * 18 17 16 21 21 H 1.09004 * 109.47039 * 96.97479 * 1 2 3 22 22 H 1.08998 * 109.47493 * 216.98305 * 1 2 3 23 23 H 1.09005 * 109.46657 * 336.98127 * 1 2 3 24 24 H 1.08007 * 119.56919 * 359.74751 * 3 2 1 25 25 H 0.96998 * 120.00161 * 6.02506 * 7 6 4 26 26 H 0.96998 * 120.00725 * 180.02562 * 11 10 8 27 27 H 1.08002 * 120.45162 * 180.02562 * 16 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2054 1.1933 0.0000 4 7 3.5242 1.2051 -0.0005 5 8 4.2038 2.4473 -0.0010 6 6 4.2292 0.0821 -0.0015 7 7 5.6187 0.1407 -0.0026 8 6 6.3297 -0.9732 -0.1244 9 1 5.8331 -1.9322 -0.1370 10 6 7.7913 -0.9018 -0.2418 11 7 8.3860 0.2464 -0.2271 12 14 8.7922 -2.4699 -0.4126 13 1 7.8811 -3.6423 -0.4017 14 1 9.5454 -2.4395 -1.6920 15 1 9.7459 -2.5741 0.7209 16 6 3.5916 -1.1538 -0.0027 17 6 2.2078 -1.1977 -0.0021 18 7 1.4918 -2.4932 -0.0027 19 8 2.1637 -3.6169 0.1398 20 8 0.1829 -2.5221 -0.1458 21 1 -0.3633 -0.1248 -1.0201 22 1 -0.3634 -0.8209 0.6182 23 1 -0.3633 0.9459 0.4019 24 1 1.6639 2.1278 -0.0041 25 1 6.0681 0.9958 0.0856 26 1 9.3516 0.2936 -0.3051 27 1 4.1681 -2.0671 -0.0031 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380099635.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:09 Heat of formation + Delta-G solvation = 86.908814 kcal Electronic energy + Delta-G solvation = -16663.834917 eV Core-core repulsion = 13622.601687 eV Total energy + Delta-G solvation = -3041.233231 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.60556 -38.37310 -36.71896 -34.24084 -33.84363 -33.41342 -31.00410 -29.23972 -27.25878 -26.26055 -24.55306 -22.81396 -21.53888 -19.27615 -18.58437 -17.68423 -16.55596 -16.42174 -15.67509 -15.62510 -14.74011 -14.54901 -14.49642 -14.01075 -12.84093 -12.78667 -12.41906 -12.16826 -12.11428 -11.70509 -11.33379 -11.08930 -10.97082 -10.78897 -10.42083 -10.30474 -10.02355 -9.84738 -8.29802 -8.24298 -7.90199 -7.56604 -4.42223 -0.25783 1.46723 1.64596 1.67022 2.56249 2.58658 2.67957 3.18547 3.50966 3.57846 4.11445 4.26699 5.03694 5.17996 5.35733 5.63571 5.78480 5.85314 5.99082 6.09523 6.16734 6.29352 6.37178 6.59765 6.80976 7.23882 7.35135 7.69307 7.88557 8.44857 8.49719 9.14745 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.025501 B = 0.008059 C = 0.006154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.723160 B = 3473.513470 C = 4548.891352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.270 4.270 3 C 0.188 3.812 4 N -0.205 5.205 5 O -0.607 6.607 6 C 0.215 3.785 7 N -0.406 5.406 8 C -0.289 4.289 9 H 0.137 0.863 10 C 0.043 3.957 11 N -0.767 5.767 12 Si 0.957 3.043 13 H -0.246 1.246 14 H -0.262 1.262 15 H -0.262 1.262 16 C -0.110 4.110 17 C 0.088 3.912 18 N -0.005 5.005 19 O -0.203 6.203 20 O -0.180 6.180 21 H 0.059 0.941 22 H 0.078 0.922 23 H 0.054 0.946 24 H 0.170 0.830 25 H 0.426 0.574 26 H 0.310 0.690 27 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.089 -4.554 0.005 5.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.283 4.283 3 C 0.035 3.965 4 N 0.094 4.906 5 O -0.653 6.653 6 C -0.017 4.017 7 N -0.001 5.001 8 C -0.428 4.428 9 H 0.154 0.846 10 C -0.182 4.182 11 N -0.390 5.390 12 Si 0.777 3.223 13 H -0.169 1.169 14 H -0.187 1.187 15 H -0.187 1.187 16 C -0.138 4.138 17 C -0.005 4.005 18 N 0.466 4.534 19 O -0.388 6.388 20 O -0.371 6.371 21 H 0.078 0.922 22 H 0.097 0.903 23 H 0.073 0.927 24 H 0.187 0.813 25 H 0.267 0.733 26 H 0.124 0.876 27 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.960 -3.639 -0.010 3.764 hybrid contribution 0.663 -0.267 -0.030 0.716 sum -0.297 -3.906 -0.040 3.918 Atomic orbital electron populations 1.20530 0.88694 1.02186 1.02242 1.18680 0.97430 0.88362 1.23817 1.21545 0.82532 0.98377 0.94095 1.42018 1.03741 1.07013 1.37874 1.97436 1.70644 1.04525 1.92678 1.16658 0.83734 0.85379 1.15935 1.40280 1.01490 1.12192 1.46135 1.21685 0.88868 0.88568 1.43629 0.84595 1.27617 0.96783 1.00579 0.93264 1.68676 1.14352 1.27565 1.28454 0.85346 0.79026 0.78342 0.79586 1.16852 1.18683 1.18680 1.20333 0.91271 0.97395 1.04765 1.19906 0.90787 0.80243 1.09541 1.50333 1.02703 1.04063 0.96272 1.96232 1.67168 1.19165 1.56252 1.96153 0.90262 1.95731 1.54925 0.92190 0.90310 0.92683 0.81252 0.73282 0.87631 0.81779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 8.69 36.01 0.31 -0.88 15 2 C -0.27 -4.93 5.90 -104.42 -0.62 -5.55 15 3 C 0.19 3.70 10.34 -17.52 -0.18 3.52 15 4 N -0.21 -4.88 3.59 -12.35 -0.04 -4.92 15 5 O -0.61 -17.46 19.06 -11.47 -0.22 -17.68 15 6 C 0.21 4.83 7.44 -154.81 -1.15 3.68 15 7 N -0.41 -9.23 5.24 -9.90 -0.05 -9.28 15 8 C -0.29 -5.94 9.79 -13.71 -0.13 -6.07 15 9 H 0.14 2.52 5.70 -52.48 -0.30 2.22 15 10 C 0.04 0.83 5.70 -15.15 -0.09 0.74 15 11 N -0.77 -15.78 13.09 56.00 0.73 -15.05 15 12 Si 0.96 14.26 29.65 -169.99 -5.04 9.22 15 13 H -0.25 -3.60 7.11 56.52 0.40 -3.20 15 14 H -0.26 -3.90 7.11 56.52 0.40 -3.50 15 15 H -0.26 -3.87 7.11 56.52 0.40 -3.47 15 16 C -0.11 -2.21 8.86 -39.19 -0.35 -2.55 15 17 C 0.09 1.71 6.90 -79.67 -0.55 1.16 15 18 N 0.00 -0.09 4.98 34.10 0.17 0.08 15 19 O -0.20 -4.08 19.27 -31.56 -0.61 -4.69 15 20 O -0.18 -3.44 16.16 -31.57 -0.51 -3.95 15 21 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 22 H 0.08 1.23 5.91 -51.93 -0.31 0.92 15 23 H 0.05 0.69 8.05 -51.93 -0.42 0.27 15 24 H 0.17 2.84 8.06 -52.48 -0.42 2.42 15 25 H 0.43 10.55 7.10 -40.82 -0.29 10.26 15 26 H 0.31 5.59 8.26 -40.82 -0.34 5.25 15 27 H 0.16 3.02 5.60 -52.49 -0.29 2.73 15 LS Contribution 252.79 15.07 3.81 3.81 Total: -1.00 -27.97 252.79 -6.10 -34.07 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -1.59 Total: 14.35 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -2.75 Total: -5.96 kcal Atomic # 7 Polarization: -29.98 SS G_CDS: 0.81 Total: -29.17 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -1.34 Total: -26.32 kcal Atomic # 14 Polarization: 14.26 SS G_CDS: -5.04 Total: 9.22 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.97 -6.10 -34.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380099635.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.974 kcal (2) G-P(sol) polarization free energy of solvation -27.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds