Wall clock time and date at job start Thu Apr 9 2020 12:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38264 * 120.34038 * 2 1 4 4 N 1.31878 * 120.85277 * 180.02562 * 3 2 1 5 5 O 1.41599 * 119.19631 * 179.97438 * 4 3 2 6 6 C 1.32592 * 121.60872 * 0.02562 * 4 3 2 7 7 N 1.39073 * 119.70537 * 179.97438 * 6 4 3 8 8 C 1.32712 * 120.00092 * 186.03226 * 7 6 4 9 9 H 1.08003 * 119.99872 * 354.72758 * 8 7 6 10 10 C 1.46797 * 119.99923 * 174.73239 * 8 7 6 11 11 N 1.29320 * 120.00568 * 359.97438 * 10 8 7 12 12 Si 1.86811 * 119.99729 * 179.97438 * 10 8 7 13 13 H 1.48491 * 109.47129 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47031 * 119.99873 * 12 10 8 15 15 H 1.48503 * 109.46722 * 239.99608 * 12 10 8 16 16 C 1.39067 * 120.59025 * 0.02562 * 6 4 3 17 17 C 1.38452 * 119.10611 * 359.97438 * 16 6 4 18 18 N 1.48018 * 120.74527 * 180.02562 * 17 16 6 19 19 O 1.31695 * 119.99664 * 7.23080 * 18 17 16 20 20 O 1.31699 * 119.99745 * 187.22942 * 18 17 16 21 21 H 1.09004 * 109.47039 * 96.97479 * 1 2 3 22 22 H 1.08998 * 109.47493 * 216.98305 * 1 2 3 23 23 H 1.09005 * 109.46657 * 336.98127 * 1 2 3 24 24 H 1.08007 * 119.56919 * 359.74751 * 3 2 1 25 25 H 0.96998 * 120.00161 * 6.02506 * 7 6 4 26 26 H 0.96998 * 120.00725 * 180.02562 * 11 10 8 27 27 H 1.08002 * 120.45162 * 180.02562 * 16 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2054 1.1933 0.0000 4 7 3.5242 1.2051 -0.0005 5 8 4.2038 2.4473 -0.0010 6 6 4.2292 0.0821 -0.0015 7 7 5.6187 0.1407 -0.0026 8 6 6.3297 -0.9732 -0.1244 9 1 5.8331 -1.9322 -0.1370 10 6 7.7913 -0.9018 -0.2418 11 7 8.3860 0.2464 -0.2271 12 14 8.7922 -2.4699 -0.4126 13 1 7.8811 -3.6423 -0.4017 14 1 9.5454 -2.4395 -1.6920 15 1 9.7459 -2.5741 0.7209 16 6 3.5916 -1.1538 -0.0027 17 6 2.2078 -1.1977 -0.0021 18 7 1.4918 -2.4932 -0.0027 19 8 2.1637 -3.6169 0.1398 20 8 0.1829 -2.5221 -0.1458 21 1 -0.3633 -0.1248 -1.0201 22 1 -0.3634 -0.8209 0.6182 23 1 -0.3633 0.9459 0.4019 24 1 1.6639 2.1278 -0.0041 25 1 6.0681 0.9958 0.0856 26 1 9.3516 0.2936 -0.3051 27 1 4.1681 -2.0671 -0.0031 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380099635.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:08 Heat of formation + Delta-G solvation = 67.229487 kcal Electronic energy + Delta-G solvation = -16664.688277 eV Core-core repulsion = 13622.601687 eV Total energy + Delta-G solvation = -3042.086590 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.33177 -39.80298 -37.58566 -36.46152 -34.74705 -33.45835 -32.33316 -30.40942 -29.40658 -27.43892 -26.34376 -23.96841 -22.92672 -21.87024 -19.94945 -18.97439 -17.85628 -17.30795 -17.14452 -16.79765 -16.61620 -15.94542 -15.68540 -15.21344 -14.65817 -14.54400 -14.30293 -13.68189 -13.34357 -13.17904 -13.05553 -12.34337 -12.10865 -11.76707 -11.26316 -10.75671 -10.36186 -10.32920 -10.07293 -9.97718 -9.84114 -9.45833 -6.17193 -1.84661 0.15766 0.51279 0.55848 0.87093 1.07885 1.68399 1.86963 2.06093 2.21829 2.33958 2.44253 2.61229 3.10917 3.60447 3.96530 4.07318 4.32361 4.38075 4.58218 4.84157 4.91462 5.02803 5.09267 5.25934 5.52954 5.86787 6.20079 6.59736 6.88276 7.14561 8.08356 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.025501 B = 0.008059 C = 0.006154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.723160 B = 3473.513470 C = 4548.891352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.204 4.204 3 C 0.129 3.871 4 N -0.291 5.291 5 O -0.688 6.688 6 C 0.242 3.758 7 N -0.407 5.407 8 C 0.291 3.709 9 H 0.246 0.754 10 C -0.046 4.046 11 N -0.588 5.588 12 Si 1.045 2.955 13 H -0.219 1.219 14 H -0.235 1.235 15 H -0.232 1.232 16 C -0.110 4.110 17 C -0.011 4.011 18 N -0.016 5.016 19 O -0.599 6.599 20 O -0.589 6.589 21 H 0.041 0.959 22 H 0.054 0.946 23 H 0.072 0.928 24 H 0.168 0.832 25 H 0.450 0.550 26 H 0.385 0.615 27 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.958 1.081 -0.876 25.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.216 4.216 3 C -0.004 4.004 4 N -0.015 5.015 5 O -0.731 6.731 6 C 0.033 3.967 7 N 0.006 4.994 8 C 0.109 3.891 9 H 0.262 0.738 10 C -0.284 4.284 11 N -0.212 5.212 12 Si 0.853 3.147 13 H -0.140 1.140 14 H -0.158 1.158 15 H -0.154 1.154 16 C -0.139 4.139 17 C -0.145 4.145 18 N 0.294 4.706 19 O -0.677 6.677 20 O -0.667 6.667 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.091 0.909 24 H 0.185 0.815 25 H 0.296 0.704 26 H 0.207 0.793 27 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 25.722 1.371 -0.849 25.772 hybrid contribution -0.161 0.407 0.008 0.438 sum 25.560 1.778 -0.841 25.636 Atomic orbital electron populations 1.20369 0.89948 1.01184 1.01086 1.18972 0.97268 0.89518 1.15844 1.21126 0.82196 0.97894 0.99199 1.41166 1.03395 1.04502 1.52401 1.97249 1.70906 1.07913 1.97005 1.17055 0.80763 0.87417 1.11431 1.42391 1.05478 1.14637 1.36871 1.28018 0.93039 0.93142 0.74874 0.73777 1.30415 0.93513 1.07438 0.97051 1.68546 1.21870 1.29998 1.00771 0.84170 0.77959 0.70325 0.82289 1.14044 1.15756 1.15423 1.20153 0.93229 0.94359 1.06119 1.19119 0.91209 0.82739 1.21395 1.47855 1.00143 1.00452 1.22110 1.95666 1.68141 1.22156 1.81757 1.95697 0.93727 1.95856 1.81440 0.94034 0.92738 0.90948 0.81454 0.70435 0.79265 0.80204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -3.52 8.69 71.24 0.62 -2.90 15 2 C -0.20 -10.75 5.90 -19.73 -0.12 -10.87 15 3 C 0.13 6.19 10.34 84.69 0.88 7.07 15 4 N -0.29 -13.80 3.59 -193.00 -0.69 -14.49 15 5 O -0.69 -37.26 19.06 -38.78 -0.74 -38.00 15 6 C 0.24 9.08 7.44 132.97 0.99 10.07 15 7 N -0.41 -9.40 5.24 -185.25 -0.97 -10.37 15 8 C 0.29 2.91 9.79 86.80 0.85 3.76 15 9 H 0.25 1.14 5.70 -2.91 -0.02 1.13 15 10 C -0.05 -0.18 5.70 87.30 0.50 0.32 15 11 N -0.59 -3.88 13.09 23.26 0.30 -3.57 15 12 Si 1.05 -1.08 29.65 68.60 2.03 0.96 15 13 H -0.22 -0.10 7.11 99.48 0.71 0.60 15 14 H -0.23 -0.01 7.11 99.48 0.71 0.70 15 15 H -0.23 0.11 7.11 99.48 0.71 0.81 15 16 C -0.11 -4.60 8.86 22.52 0.20 -4.40 15 17 C -0.01 -0.60 6.90 36.55 0.25 -0.35 15 18 N -0.02 -1.09 4.98 -46.04 -0.23 -1.32 15 19 O -0.60 -43.35 19.27 3.52 0.07 -43.28 15 20 O -0.59 -44.86 16.16 3.52 0.06 -44.80 15 21 H 0.04 2.14 8.14 -2.39 -0.02 2.12 15 22 H 0.05 3.22 5.91 -2.39 -0.01 3.20 15 23 H 0.07 3.00 8.05 -2.38 -0.02 2.99 15 24 H 0.17 7.27 8.06 -2.91 -0.02 7.25 15 25 H 0.45 11.02 7.10 -92.71 -0.66 10.36 15 26 H 0.38 0.25 8.26 -92.71 -0.77 -0.51 15 27 H 0.18 5.95 5.60 -2.91 -0.02 5.93 15 Total: -1.00 -122.18 252.79 4.58 -117.60 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: 0.59 Total: 34.58 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 4.17 Total: 2.69 kcal Atomic # 7 Polarization: -28.16 SS G_CDS: -1.59 Total: -29.75 kcal Atomic # 8 Polarization: -125.47 SS G_CDS: -0.61 Total: -126.08 kcal Atomic # 14 Polarization: -1.08 SS G_CDS: 2.03 Total: 0.96 kcal Total: -122.18 4.58 -117.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380099635.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.827 kcal (2) G-P(sol) polarization free energy of solvation -122.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -117.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds