Wall clock time and date at job start Thu Apr 9 2020 12:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00021 * 2 1 4 4 H 1.48497 * 109.47317 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46658 * 120.00629 * 3 2 1 6 6 H 1.48498 * 109.47245 * 240.00390 * 3 2 1 7 7 C 1.37873 * 119.99606 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00397 * 14.39590 * 7 2 1 9 9 C 1.50703 * 119.99883 * 194.39693 * 7 2 1 10 10 O 1.42894 * 112.93780 * 65.59182 * 9 7 2 11 11 C 1.53931 * 113.73329 * 294.02567 * 9 7 2 12 12 N 1.48191 * 86.10382 * 221.95510 * 11 9 7 13 13 C 1.38541 * 111.07226 * 137.51877 * 12 11 9 14 14 N 1.32451 * 119.18775 * 260.29861 * 13 12 11 15 15 C 1.32299 * 120.76239 * 179.76136 * 14 13 12 16 16 C 1.38782 * 119.16771 * 0.50423 * 15 14 13 17 17 F 1.35094 * 120.74507 * 179.72853 * 16 15 14 18 18 C 1.38783 * 118.51200 * 359.75097 * 16 15 14 19 19 N 1.32300 * 119.16400 * 359.97438 * 18 16 15 20 20 C 1.47965 * 90.79408 * 24.59826 * 12 11 9 21 21 H 0.96998 * 120.00288 * 174.86355 * 1 2 3 22 22 H 0.96707 * 114.00278 * 305.72064 * 10 9 7 23 23 H 1.09008 * 113.76207 * 336.23596 * 11 9 7 24 24 H 1.09000 * 113.75973 * 107.60215 * 11 9 7 25 25 H 1.08003 * 120.41512 * 180.23379 * 15 14 13 26 26 H 1.07995 * 120.42070 * 180.02562 * 18 16 15 27 27 H 1.08994 * 113.75787 * 221.07950 * 20 12 11 28 28 H 1.09003 * 113.75723 * 89.72194 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1030 1.6962 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 1.4899 -2.1146 -0.2335 9 6 3.4760 -1.2148 0.3240 10 8 3.7543 -0.8324 1.6724 11 6 4.3503 -0.4936 -0.7176 12 7 5.2902 -1.6292 -0.5662 13 6 5.7782 -2.0393 -1.7962 14 7 5.2437 -3.1001 -2.3821 15 6 5.6825 -3.5162 -3.5588 16 6 6.7222 -2.8325 -4.1733 17 9 7.1988 -3.2329 -5.3723 18 6 7.2618 -1.7285 -3.5282 19 7 6.7711 -1.3638 -2.3550 20 6 4.1887 -2.5072 -0.1132 21 1 -0.4850 -0.8366 -0.0752 22 1 3.3816 0.0239 1.9234 23 1 3.8941 -0.4298 -1.7056 24 1 4.7511 0.4589 -0.3707 25 1 5.2400 -4.3797 -4.0333 26 1 8.0714 -1.1736 -3.9787 27 1 4.4606 -3.1607 0.7156 28 1 3.6851 -3.0337 -0.9239 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408444930.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:16 Heat of formation + Delta-G solvation = -4.463673 kcal Electronic energy + Delta-G solvation = -16872.640608 eV Core-core repulsion = 13839.817959 eV Total energy + Delta-G solvation = -3032.822650 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.081 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.08963 -42.68812 -40.61974 -36.57784 -35.09919 -34.66763 -32.50077 -29.41096 -27.70980 -26.35429 -25.84858 -23.57038 -21.09755 -20.06687 -19.43268 -18.78529 -18.44972 -17.48129 -17.38657 -16.74061 -16.12884 -15.66689 -15.46894 -15.22694 -15.03756 -14.38701 -14.13311 -14.09117 -13.46398 -13.04190 -12.77700 -12.50613 -12.25455 -12.19120 -11.70868 -11.39765 -11.09444 -10.94322 -10.37437 -10.35016 -9.70093 -8.85173 -6.61117 -0.51738 -0.18679 1.37606 1.46084 1.62559 2.08681 2.36404 2.38542 2.69625 2.81130 2.93285 3.21932 3.59010 3.62150 3.69145 3.82687 4.06076 4.25811 4.46716 4.52874 4.70406 4.81235 5.09246 5.13351 5.47804 5.62187 5.88215 6.01603 6.38103 6.81200 6.96637 7.23283 8.48929 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.036779 B = 0.007071 C = 0.007022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.126930 B = 3959.161490 C = 3986.430985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 1.071 2.929 4 H -0.284 1.284 5 H -0.240 1.240 6 H -0.255 1.255 7 C -0.622 4.622 8 H 0.032 0.968 9 C 0.197 3.803 10 O -0.565 6.565 11 C 0.003 3.997 12 N -0.423 5.423 13 C 0.441 3.559 14 N -0.541 5.541 15 C 0.144 3.856 16 C -0.024 4.024 17 F -0.113 7.113 18 C 0.147 3.853 19 N -0.513 5.513 20 C 0.049 3.951 21 H 0.258 0.742 22 H 0.372 0.628 23 H 0.070 0.930 24 H 0.097 0.903 25 H 0.212 0.788 26 H 0.220 0.780 27 H 0.089 0.911 28 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.675 -2.534 -8.739 16.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.208 4.208 3 Si 0.891 3.109 4 H -0.209 1.209 5 H -0.164 1.164 6 H -0.179 1.179 7 C -0.660 4.660 8 H 0.051 0.949 9 C 0.155 3.845 10 O -0.374 6.374 11 C -0.124 4.124 12 N -0.144 5.144 13 C 0.086 3.914 14 N -0.259 5.259 15 C -0.024 4.024 16 C -0.049 4.049 17 F -0.092 7.092 18 C -0.021 4.021 19 N -0.229 5.229 20 C -0.079 4.079 21 H 0.068 0.932 22 H 0.222 0.778 23 H 0.088 0.912 24 H 0.116 0.884 25 H 0.228 0.772 26 H 0.236 0.764 27 H 0.107 0.893 28 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 14.030 -1.124 -7.380 15.893 hybrid contribution -0.803 -2.012 -1.576 2.679 sum 13.227 -3.135 -8.956 16.279 Atomic orbital electron populations 1.70945 1.08071 1.30524 1.45839 1.27225 0.96161 1.06049 0.91315 0.83804 0.75096 0.71877 0.80082 1.20944 1.16406 1.17918 1.22369 0.94823 0.95422 1.53384 0.94941 1.20329 0.91844 0.92182 0.80132 1.86364 1.79230 1.42118 1.29681 1.24987 0.91308 0.94898 1.01255 1.65625 1.25810 1.07632 1.15318 1.22167 0.89692 0.88333 0.91235 1.68500 1.29275 1.16783 1.11324 1.23875 0.90937 0.98551 0.89060 1.19295 1.00382 0.99562 0.85634 1.91559 1.86960 1.89855 1.40846 1.23996 0.97590 0.91998 0.88533 1.68179 1.11266 1.31872 1.11565 1.23962 0.88241 0.95809 0.99905 0.93243 0.77768 0.91179 0.88440 0.77188 0.76364 0.89251 0.87916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.70 13.70 21.45 0.29 -54.40 15 2 C -0.01 -0.35 5.44 84.65 0.46 0.11 15 3 Si 1.07 45.45 24.55 68.60 1.68 47.13 15 4 H -0.28 -12.25 7.11 99.48 0.71 -11.54 15 5 H -0.24 -8.71 5.81 99.48 0.58 -8.13 15 6 H -0.25 -9.91 6.48 99.48 0.64 -9.27 15 7 C -0.62 -34.08 9.04 25.60 0.23 -33.84 15 8 H 0.03 1.96 8.06 -2.91 -0.02 1.94 15 9 C 0.20 9.25 1.07 -10.90 -0.01 9.23 15 10 O -0.57 -26.17 13.47 -148.98 -2.01 -28.18 15 11 C 0.00 0.11 4.71 86.36 0.41 0.52 15 12 N -0.42 -17.35 6.34 -722.12 -4.58 -21.94 15 13 C 0.44 16.14 6.79 261.45 1.78 17.91 15 14 N -0.54 -18.02 8.21 -197.78 -1.62 -19.64 15 15 C 0.14 3.48 11.29 84.75 0.96 4.44 15 16 C -0.02 -0.51 7.38 22.53 0.17 -0.35 15 17 F -0.11 -2.12 17.29 44.97 0.78 -1.35 15 18 C 0.15 3.35 11.29 84.75 0.96 4.31 15 19 N -0.51 -16.48 10.47 -197.78 -2.07 -18.55 15 20 C 0.05 2.10 7.03 86.41 0.61 2.71 15 21 H 0.26 15.63 8.73 -92.71 -0.81 14.82 15 22 H 0.37 15.69 6.07 -74.05 -0.45 15.24 15 23 H 0.07 3.07 7.74 -2.38 -0.02 3.05 15 24 H 0.10 3.85 6.86 -2.39 -0.02 3.83 15 25 H 0.21 3.44 8.06 -2.91 -0.02 3.42 15 26 H 0.22 2.99 8.06 -2.91 -0.02 2.97 15 27 H 0.09 3.72 8.14 -2.39 -0.02 3.70 15 28 H 0.10 4.46 6.59 -2.39 -0.02 4.44 15 Total: -1.00 -65.96 245.76 -1.44 -67.41 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.53 Total: 24.47 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 5.55 Total: 5.05 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -7.98 Total: -114.53 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -2.01 Total: -28.18 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.78 Total: -1.35 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.68 Total: 47.13 kcal Total: -65.96 -1.44 -67.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408444930.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.944 kcal (2) G-P(sol) polarization free energy of solvation -65.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds